Wall clock time and date at job start Mon Mar 30 2020 01:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.11819 * 2 1 4 4 C 1.53673 * 109.12981 * 240.83083 * 2 1 3 5 5 S 1.82205 * 103.28030 * 239.63142 * 4 2 1 6 6 C 1.76759 * 95.67995 * 0.02562 * 5 4 2 7 7 S 1.76202 * 125.01933 * 179.73609 * 6 5 4 8 8 C 1.80998 * 100.00110 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47089 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46921 * 179.97438 * 9 8 7 11 11 S 1.80999 * 109.46951 * 179.97438 * 10 9 8 12 12 C 1.76198 * 100.00005 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00404 * 0.02562 * 12 11 10 14 14 C 1.38807 * 120.00270 * 180.02562 * 12 11 10 15 15 N 1.31628 * 119.99930 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 119.99548 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46863 * 90.00505 * 16 14 12 18 18 H 1.48504 * 109.47045 * 209.99644 * 16 14 12 19 19 H 1.48495 * 109.47616 * 330.00138 * 16 14 12 20 20 N 1.28547 * 109.96322 * 359.97438 * 6 5 4 21 21 H 1.08991 * 109.47405 * 179.16864 * 1 2 3 22 22 H 1.09004 * 109.46721 * 299.17277 * 1 2 3 23 23 H 1.09000 * 109.46885 * 59.16721 * 1 2 3 24 24 H 1.08999 * 110.65579 * 121.18840 * 4 2 1 25 25 H 1.08991 * 110.79796 * 358.14746 * 4 2 1 26 26 H 1.09002 * 109.46817 * 299.99879 * 8 7 6 27 27 H 1.08998 * 109.47432 * 59.99736 * 8 7 6 28 28 H 1.08994 * 109.47378 * 299.99947 * 9 8 7 29 29 H 1.09005 * 109.47427 * 60.00239 * 9 8 7 30 30 H 1.08994 * 109.47364 * 300.00339 * 10 9 8 31 31 H 1.09006 * 109.47050 * 60.00292 * 10 9 8 32 32 H 0.97004 * 119.99792 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8870 1.0299 0.0000 4 6 2.0336 -0.7076 -1.2677 5 16 3.0178 -2.0931 -0.6108 6 6 2.7436 -1.7101 1.0929 7 16 3.3869 -2.6287 2.4520 8 6 2.7075 -1.6703 3.8289 9 6 3.1457 -2.2988 5.1531 10 6 2.5719 -1.4883 6.3170 11 16 3.0897 -2.2324 7.8836 12 6 2.3108 -1.1314 9.0175 13 1 1.7272 -0.3007 8.6492 14 6 2.4474 -1.3316 10.3842 15 7 1.8659 -0.5088 11.2312 16 14 3.4564 -2.7687 11.0213 17 1 4.8688 -2.3439 11.1938 18 1 2.9109 -3.2157 12.3282 19 1 3.3916 -3.8889 10.0486 20 7 2.0015 -0.6654 1.1939 21 1 -0.3634 -1.0275 -0.0149 22 1 -0.3633 0.5010 0.8974 23 1 -0.3633 0.5267 -0.8824 24 1 2.6586 -0.0385 -1.8591 25 1 1.1983 -1.0772 -1.8624 26 1 3.0741 -0.6452 3.7739 27 1 1.6191 -1.6705 3.7696 28 1 2.7788 -3.3237 5.2079 29 1 4.2342 -2.2989 5.2127 30 1 2.9391 -0.4635 6.2620 31 1 1.4834 -1.4878 6.2576 32 1 1.9610 -0.6489 12.1864 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155739525.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:24 Heat of formation + Delta-G solvation = -1.369509 kcal Electronic energy + Delta-G solvation = -14101.828631 eV Core-core repulsion = 11633.434407 eV Total energy + Delta-G solvation = -2468.394224 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 277.032 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.50508 -34.53243 -32.62053 -32.45753 -27.94846 -27.23305 -25.64884 -24.71786 -21.64323 -20.95355 -18.49065 -17.51761 -16.48029 -16.08279 -15.40015 -15.26254 -14.95147 -14.37625 -14.12517 -13.52887 -13.40637 -12.90317 -12.85222 -12.68035 -12.39356 -12.25455 -11.86834 -11.72821 -11.21861 -11.12586 -11.07566 -10.69949 -10.68231 -10.21820 -9.83447 -9.72298 -9.02471 -8.61034 -8.31446 -8.08688 -6.97971 -6.30179 -4.03293 0.61948 1.23621 1.40812 1.61379 2.02402 2.98665 3.29243 3.44242 3.55147 3.87286 4.24487 4.29908 4.38217 4.74685 4.76303 4.90736 4.95567 4.99477 5.08529 5.09093 5.29312 5.41069 5.45445 5.62959 5.72069 5.80068 6.07799 6.30107 6.51903 6.94646 7.93507 8.42668 9.15413 10.79276 Molecular weight = 277.03amu Principal moments of inertia in cm(-1) A = 0.041408 B = 0.003066 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.043004 B = 9129.551964 C = 9713.540778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.108 0.892 4 C -0.115 4.115 5 S -0.166 6.166 6 C 0.176 3.824 7 S 0.000 6.000 8 C -0.098 4.098 9 C -0.090 4.090 10 C -0.078 4.078 11 S -0.211 6.211 12 C -0.503 4.503 13 H 0.089 0.911 14 C 0.092 3.908 15 N -0.881 5.881 16 Si 0.861 3.139 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.237 1.237 20 N -0.519 5.519 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.320 -1.397 -24.974 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 H 0.126 0.874 4 C -0.267 4.267 5 S 0.062 5.938 6 C -0.231 4.231 7 S 0.232 5.768 8 C -0.250 4.250 9 C -0.130 4.130 10 C -0.228 4.228 11 S 0.017 5.983 12 C -0.651 4.651 13 H 0.107 0.893 14 C -0.116 4.116 15 N -0.518 5.518 16 Si 0.686 3.314 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.161 1.161 20 N -0.240 5.240 21 H 0.078 0.922 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.127 0.873 25 H 0.130 0.870 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.820 -3.525 -24.550 24.869 hybrid contribution -1.635 2.461 0.061 2.955 sum 0.185 -1.064 -24.489 24.513 Atomic orbital electron populations 1.21876 0.91731 1.02891 1.03137 1.22436 0.98183 1.00185 0.83761 0.87398 1.25063 1.02475 0.97565 1.01565 1.86718 1.65573 1.40035 1.01522 1.29063 0.97393 0.96904 0.99727 1.86084 1.62751 1.34890 0.93081 1.23769 1.04795 1.02260 0.94133 1.21166 1.02037 0.99943 0.89900 1.23018 1.02832 1.01406 0.95556 1.84168 1.71062 1.43399 0.99696 1.22110 1.36693 1.14213 0.92057 0.89348 1.24796 0.94789 0.96317 0.95742 1.69937 1.42450 1.36617 1.02785 0.86672 0.80862 0.83895 0.79936 1.19325 1.20071 1.16113 1.70701 1.14515 1.09354 1.29453 0.92154 0.90896 0.91119 0.87250 0.87039 0.88511 0.88504 0.90301 0.90317 0.91058 0.91020 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.20 37.16 0.34 -0.68 16 2 C 0.07 0.62 4.06 -68.60 -0.28 0.34 16 3 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.12 -0.84 7.08 37.51 0.27 -0.58 16 5 S -0.17 -1.74 23.28 -107.50 -2.50 -4.24 16 6 C 0.18 2.12 7.73 51.39 0.40 2.52 16 7 S 0.00 0.00 22.31 -107.50 -2.40 -2.40 16 8 C -0.10 -1.25 5.15 37.16 0.19 -1.06 16 9 C -0.09 -1.33 5.22 -26.73 -0.14 -1.46 16 10 C -0.08 -1.46 5.67 37.16 0.21 -1.25 16 11 S -0.21 -5.05 19.41 -107.50 -2.09 -7.14 16 12 C -0.50 -14.49 10.04 30.94 0.31 -14.18 16 13 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 14 C 0.09 2.67 5.50 -17.43 -0.10 2.58 16 15 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 16 Si 0.86 21.39 27.74 -169.99 -4.71 16.67 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.24 -5.75 6.74 56.52 0.38 -5.37 16 20 N -0.52 -6.20 9.67 -54.82 -0.53 -6.73 16 21 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.11 0.65 7.67 -51.93 -0.40 0.25 16 26 H 0.10 1.25 8.14 -51.91 -0.42 0.83 16 27 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 31 H 0.07 1.35 8.14 -51.91 -0.42 0.92 16 32 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 310.54 15.07 4.68 4.68 Total: -1.00 -30.85 310.54 -10.20 -41.05 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -4.63 Total: -2.24 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 1.20 Total: -13.77 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.24 Total: -32.61 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.67 kcal Atomic # 16 Polarization: -6.79 SS G_CDS: -6.99 Total: -13.78 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.85 -10.20 -41.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155739525.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.679 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds