Wall clock time and date at job start Mon Mar 30 2020 01:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.11819 * 2 1 4 4 C 1.53673 * 109.12981 * 240.83083 * 2 1 3 5 5 S 1.82205 * 103.28030 * 239.63142 * 4 2 1 6 6 C 1.76759 * 95.67995 * 0.02562 * 5 4 2 7 7 S 1.76202 * 125.01933 * 179.73609 * 6 5 4 8 8 C 1.80998 * 100.00110 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47089 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46921 * 179.97438 * 9 8 7 11 11 S 1.80999 * 109.46951 * 179.97438 * 10 9 8 12 12 C 1.76198 * 100.00005 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00404 * 0.02562 * 12 11 10 14 14 C 1.38807 * 120.00270 * 180.02562 * 12 11 10 15 15 N 1.31628 * 119.99930 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 119.99548 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46863 * 90.00505 * 16 14 12 18 18 H 1.48504 * 109.47045 * 209.99644 * 16 14 12 19 19 H 1.48495 * 109.47616 * 330.00138 * 16 14 12 20 20 N 1.28547 * 109.96322 * 359.97438 * 6 5 4 21 21 H 1.08991 * 109.47405 * 179.16864 * 1 2 3 22 22 H 1.09004 * 109.46721 * 299.17277 * 1 2 3 23 23 H 1.09000 * 109.46885 * 59.16721 * 1 2 3 24 24 H 1.08999 * 110.65579 * 121.18840 * 4 2 1 25 25 H 1.08991 * 110.79796 * 358.14746 * 4 2 1 26 26 H 1.09002 * 109.46817 * 299.99879 * 8 7 6 27 27 H 1.08998 * 109.47432 * 59.99736 * 8 7 6 28 28 H 1.08994 * 109.47378 * 299.99947 * 9 8 7 29 29 H 1.09005 * 109.47427 * 60.00239 * 9 8 7 30 30 H 1.08994 * 109.47364 * 300.00339 * 10 9 8 31 31 H 1.09006 * 109.47050 * 60.00292 * 10 9 8 32 32 H 0.97004 * 119.99792 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8870 1.0299 0.0000 4 6 2.0336 -0.7076 -1.2677 5 16 3.0178 -2.0931 -0.6108 6 6 2.7436 -1.7101 1.0929 7 16 3.3869 -2.6287 2.4520 8 6 2.7075 -1.6703 3.8289 9 6 3.1457 -2.2988 5.1531 10 6 2.5719 -1.4883 6.3170 11 16 3.0897 -2.2324 7.8836 12 6 2.3108 -1.1314 9.0175 13 1 1.7272 -0.3007 8.6492 14 6 2.4474 -1.3316 10.3842 15 7 1.8659 -0.5088 11.2312 16 14 3.4564 -2.7687 11.0213 17 1 4.8688 -2.3439 11.1938 18 1 2.9109 -3.2157 12.3282 19 1 3.3916 -3.8889 10.0486 20 7 2.0015 -0.6654 1.1939 21 1 -0.3634 -1.0275 -0.0149 22 1 -0.3633 0.5010 0.8974 23 1 -0.3633 0.5267 -0.8824 24 1 2.6586 -0.0385 -1.8591 25 1 1.1983 -1.0772 -1.8624 26 1 3.0741 -0.6452 3.7739 27 1 1.6191 -1.6705 3.7696 28 1 2.7788 -3.3237 5.2079 29 1 4.2342 -2.2989 5.2127 30 1 2.9391 -0.4635 6.2620 31 1 1.4834 -1.4878 6.2576 32 1 1.9610 -0.6489 12.1864 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155739525.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:24 Heat of formation + Delta-G solvation = -20.301175 kcal Electronic energy + Delta-G solvation = -14102.649570 eV Core-core repulsion = 11633.434407 eV Total energy + Delta-G solvation = -2469.215162 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 277.032 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.25622 -35.80712 -34.68659 -33.34462 -28.65769 -28.49742 -27.80901 -25.52586 -22.93058 -21.68338 -19.65720 -19.31029 -17.36068 -17.10567 -16.80686 -16.55645 -16.43946 -15.67539 -15.03651 -14.91809 -14.50639 -14.31983 -13.83058 -13.68159 -13.52909 -13.27721 -13.12087 -13.01698 -12.85659 -12.46301 -12.14820 -11.97315 -11.80652 -11.77091 -11.56752 -11.16358 -10.59464 -10.56656 -9.11655 -9.00853 -8.97176 -8.52065 -6.23764 -0.23342 0.37495 0.55846 0.92556 0.99958 1.17127 1.33154 1.48770 1.75344 2.25092 2.66983 2.86193 3.22738 3.62055 3.73682 3.81230 3.92668 4.06759 4.15026 4.28508 4.38976 4.44663 4.59826 4.71720 4.73905 4.86407 4.95988 5.13735 5.13976 5.69517 6.10245 6.15045 6.91849 8.61094 Molecular weight = 277.03amu Principal moments of inertia in cm(-1) A = 0.041408 B = 0.003066 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.043004 B = 9129.551964 C = 9713.540778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.062 3.938 3 H 0.119 0.881 4 C -0.102 4.102 5 S -0.188 6.188 6 C 0.163 3.837 7 S 0.005 5.995 8 C -0.089 4.089 9 C -0.078 4.078 10 C -0.066 4.066 11 S -0.213 6.213 12 C -0.524 4.524 13 H 0.050 0.950 14 C 0.037 3.963 15 N -0.923 5.923 16 Si 0.926 3.074 17 H -0.261 1.261 18 H -0.264 1.264 19 H -0.227 1.227 20 N -0.537 5.537 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.098 0.902 24 H 0.131 0.869 25 H 0.131 0.869 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 -2.193 -26.900 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.054 4.054 3 H 0.136 0.864 4 C -0.253 4.253 5 S 0.039 5.961 6 C -0.244 4.244 7 S 0.237 5.763 8 C -0.241 4.241 9 C -0.118 4.118 10 C -0.217 4.217 11 S 0.015 5.985 12 C -0.671 4.671 13 H 0.069 0.931 14 C -0.167 4.167 15 N -0.561 5.561 16 Si 0.747 3.253 17 H -0.186 1.186 18 H -0.188 1.188 19 H -0.150 1.150 20 N -0.259 5.259 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.117 0.883 24 H 0.149 0.851 25 H 0.149 0.851 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.364 -4.313 -26.488 26.941 hybrid contribution -1.890 2.839 0.490 3.446 sum 0.473 -1.474 -25.999 26.045 Atomic orbital electron populations 1.21866 0.90735 1.02578 1.03905 1.22614 0.98923 1.00442 0.83416 0.86382 1.25189 1.02826 0.96253 1.00983 1.86761 1.66515 1.42022 1.00824 1.29047 0.97875 0.97255 1.00209 1.85975 1.62828 1.34732 0.92791 1.23523 1.04676 1.02178 0.93739 1.21019 1.02161 0.99539 0.89129 1.23063 1.02874 1.01651 0.94089 1.83820 1.70671 1.42693 1.01283 1.22341 1.36673 1.14363 0.93729 0.93140 1.25796 0.95873 0.99143 0.95936 1.70041 1.43977 1.38641 1.03453 0.85709 0.79284 0.80530 0.79812 1.18553 1.18822 1.14990 1.70698 1.14184 1.09343 1.31644 0.93014 0.92154 0.88283 0.85091 0.85103 0.88680 0.88700 0.89690 0.89676 0.91263 0.91234 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.20 71.98 0.66 -1.03 16 2 C 0.06 0.95 4.06 45.58 0.18 1.13 16 3 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 4 C -0.10 -1.20 7.08 72.21 0.51 -0.69 16 5 S -0.19 -3.63 23.28 -56.49 -1.31 -4.95 16 6 C 0.16 3.74 7.73 130.72 1.01 4.74 16 7 S 0.00 0.11 22.31 -56.49 -1.26 -1.15 16 8 C -0.09 -2.19 5.15 71.98 0.37 -1.82 16 9 C -0.08 -2.20 5.22 30.59 0.16 -2.04 16 10 C -0.07 -2.46 5.67 71.98 0.41 -2.06 16 11 S -0.21 -10.06 19.41 -56.49 -1.10 -11.16 16 12 C -0.52 -30.79 10.04 67.96 0.68 -30.11 16 13 H 0.05 3.23 8.03 -2.91 -0.02 3.21 16 14 C 0.04 2.18 5.50 84.86 0.47 2.65 16 15 N -0.92 -56.94 13.97 21.65 0.30 -56.64 16 16 Si 0.93 43.87 27.74 68.60 1.90 45.77 16 17 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.23 -10.27 6.74 99.48 0.67 -9.60 16 20 N -0.54 -12.11 9.67 -327.36 -3.17 -15.27 16 21 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 23 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.13 1.01 8.14 -2.39 -0.02 1.00 16 25 H 0.13 1.07 7.67 -2.39 -0.02 1.05 16 26 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.09 2.37 8.14 -2.40 -0.02 2.35 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.07 2.60 8.14 -2.40 -0.02 2.58 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -67.01 310.54 0.88 -66.13 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.06 Total: 6.47 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 4.46 Total: -29.21 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -2.86 Total: -71.91 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.90 Total: 45.77 kcal Atomic # 16 Polarization: -13.59 SS G_CDS: -3.67 Total: -17.26 kcal Total: -67.01 0.88 -66.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155739525.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.829 kcal (2) G-P(sol) polarization free energy of solvation -67.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds