Wall clock time and date at job start Mon Mar 30 2020 01:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34916 * 125.63070 * 2 1 4 4 C 1.40677 * 107.09383 * 179.97438 * 3 2 1 5 5 C 1.36461 * 106.71452 * 359.97438 * 4 3 2 6 6 C 1.46862 * 125.97143 * 179.97438 * 5 4 3 7 7 C 1.36985 * 125.16242 * 180.02562 * 6 5 4 8 8 C 1.36546 * 114.73545 * 179.68724 * 7 6 5 9 9 C 1.36945 * 114.74255 * 0.50103 * 8 7 6 10 10 C 1.46156 * 125.15636 * 179.78240 * 9 8 7 11 11 O 1.21808 * 119.99895 * 359.72690 * 10 9 8 12 12 N 1.34781 * 119.99556 * 179.44303 * 10 9 8 13 13 C 1.36855 * 119.99387 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99986 * 0.02562 * 13 12 10 15 15 C 1.38976 * 119.99495 * 180.02562 * 13 12 10 16 16 N 1.31414 * 120.00086 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00200 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47209 * 90.00484 * 17 15 13 19 19 H 1.48506 * 109.47294 * 210.00332 * 17 15 13 20 20 H 1.48501 * 109.47275 * 330.00235 * 17 15 13 21 21 S 1.75832 * 125.16707 * 359.97073 * 6 5 4 22 22 O 1.34266 * 125.62898 * 180.27658 * 2 1 3 23 23 H 1.09004 * 109.47036 * 89.99668 * 1 2 3 24 24 H 1.09001 * 109.47753 * 210.00229 * 1 2 3 25 25 H 1.09004 * 109.47331 * 330.00726 * 1 2 3 26 26 H 1.08003 * 126.45068 * 359.97438 * 3 2 1 27 27 H 1.07991 * 126.64321 * 179.97438 * 4 3 2 28 28 H 1.07990 * 122.63212 * 359.95380 * 7 6 5 29 29 H 1.07999 * 122.62810 * 180.28648 * 8 7 6 30 30 H 0.96995 * 119.99928 * 0.02562 * 12 10 9 31 31 H 0.97000 * 120.00782 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2929 1.0966 0.0000 4 6 3.6267 0.6494 0.0006 5 6 3.5833 -0.7146 0.0015 6 6 4.7438 -1.6146 0.0019 7 6 4.6809 -2.9830 0.0023 8 6 5.8935 -3.6107 -0.0042 9 6 6.9743 -2.7697 0.0008 10 6 8.3723 -3.1959 0.0001 11 8 8.6473 -4.3825 -0.0002 12 7 9.3573 -2.2758 -0.0060 13 6 10.6663 -2.6749 -0.0072 14 1 10.9101 -3.7271 -0.0036 15 6 11.6819 -1.7263 -0.0129 16 7 12.9390 -2.1094 -0.0145 17 14 11.2602 0.0935 -0.0198 18 1 11.1510 0.5816 1.3785 19 1 12.3284 0.8466 -0.7249 20 1 9.9660 0.2991 -0.7183 21 16 6.4250 -1.0993 0.0004 22 8 2.2891 -1.0913 -0.0053 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8901 0.5137 26 1 1.9606 2.1242 -0.0004 27 1 4.5132 1.2660 0.0004 28 1 3.7457 -3.5229 0.0032 29 1 5.9926 -4.6861 -0.0092 30 1 9.1382 -1.3309 -0.0096 31 1 13.6479 -1.4474 -0.0189 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182953995.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:40 Heat of formation + Delta-G solvation = -10.458924 kcal Electronic energy + Delta-G solvation = -17717.053660 eV Core-core repulsion = 14670.068468 eV Total energy + Delta-G solvation = -3046.985193 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.55897 -40.53031 -38.39931 -36.19850 -34.25082 -33.99002 -33.43846 -30.90843 -28.37778 -26.58161 -24.95037 -23.05162 -22.13813 -21.68028 -21.11813 -19.98038 -18.94573 -17.58086 -17.30468 -16.88086 -16.79174 -16.00315 -15.87823 -15.32952 -14.99763 -14.71154 -14.31821 -14.11820 -13.99444 -13.90812 -13.61783 -13.50354 -13.24245 -13.08732 -12.67217 -12.57488 -12.16880 -12.07863 -11.71096 -11.11056 -10.85968 -10.48406 -10.39597 -9.74551 -8.77813 -8.56847 -6.14324 -0.97594 0.09169 0.62691 0.63966 1.22361 1.26273 1.35619 1.37385 1.79699 1.96510 2.11222 2.18903 2.64060 3.06463 3.43642 3.86801 3.95315 3.97196 4.19147 4.34478 4.58313 4.64554 4.75036 4.78165 4.91545 4.96521 5.05365 5.21133 5.24582 5.39310 5.55061 5.77525 6.06018 6.37528 6.64977 7.13424 7.65677 8.59111 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.030473 B = 0.004254 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.621656 B = 6580.991318 C = 7484.455673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.005 4.005 3 C -0.216 4.216 4 C -0.184 4.184 5 C 0.024 3.976 6 C -0.120 4.120 7 C -0.121 4.121 8 C -0.070 4.070 9 C -0.250 4.250 10 C 0.508 3.492 11 O -0.615 6.615 12 N -0.568 5.568 13 C -0.333 4.333 14 H 0.069 0.931 15 C -0.002 4.002 16 N -0.911 5.911 17 Si 0.943 3.057 18 H -0.247 1.247 19 H -0.258 1.258 20 H -0.237 1.237 21 S 0.214 5.786 22 O -0.178 6.178 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.180 0.820 27 H 0.161 0.839 28 H 0.172 0.828 29 H 0.153 0.847 30 H 0.385 0.615 31 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.930 12.371 0.022 28.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.056 4.056 3 C -0.234 4.234 4 C -0.205 4.205 5 C -0.027 4.027 6 C -0.239 4.239 7 C -0.151 4.151 8 C -0.103 4.103 9 C -0.371 4.371 10 C 0.297 3.703 11 O -0.503 6.503 12 N -0.206 5.206 13 C -0.462 4.462 14 H 0.087 0.913 15 C -0.203 4.203 16 N -0.549 5.549 17 Si 0.762 3.238 18 H -0.171 1.171 19 H -0.182 1.182 20 H -0.161 1.161 21 S 0.482 5.518 22 O -0.076 6.076 23 H 0.115 0.885 24 H 0.101 0.899 25 H 0.132 0.868 26 H 0.197 0.803 27 H 0.179 0.821 28 H 0.189 0.811 29 H 0.170 0.830 30 H 0.220 0.780 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.779 12.744 0.018 27.865 hybrid contribution 0.151 -0.787 -0.022 0.802 sum -24.629 11.957 -0.005 27.378 Atomic orbital electron populations 1.20577 0.81788 1.05629 1.05007 1.23525 0.95684 0.83308 1.03113 1.21838 0.91393 1.00980 1.09224 1.22186 1.00089 0.92509 1.05745 1.19147 0.81031 0.91963 1.10573 1.22408 0.94247 0.95761 1.11469 1.20560 0.99285 0.91863 1.03376 1.20536 0.89837 1.01663 0.98222 1.24542 0.96837 0.98366 1.17336 1.16962 0.83895 0.85755 0.83662 1.90680 1.83844 1.18029 1.57708 1.41943 1.05755 1.07594 1.65303 1.19108 0.80935 0.95449 1.50679 0.91336 1.26067 0.94139 1.04786 0.95352 1.69751 1.00177 1.37599 1.47416 0.85667 0.80524 0.76710 0.80903 1.17080 1.18239 1.16084 1.83638 0.94955 1.03551 1.69649 1.84014 1.15490 1.36179 1.71886 0.88454 0.89893 0.86817 0.80254 0.82116 0.81058 0.82983 0.77960 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.41 71.23 0.74 0.18 16 2 C 0.00 -0.08 7.32 24.92 0.18 0.10 16 3 C -0.22 -3.62 10.77 22.10 0.24 -3.38 16 4 C -0.18 -3.94 10.62 22.45 0.24 -3.70 16 5 C 0.02 0.60 7.12 24.11 0.17 0.78 16 6 C -0.12 -3.34 6.45 24.23 0.16 -3.19 16 7 C -0.12 -3.36 10.12 21.58 0.22 -3.14 16 8 C -0.07 -2.36 9.87 21.57 0.21 -2.15 16 9 C -0.25 -9.79 6.43 24.02 0.15 -9.63 16 10 C 0.51 25.73 7.72 86.30 0.67 26.40 16 11 O -0.61 -36.43 16.38 -4.69 -0.08 -36.50 16 12 N -0.57 -28.90 5.08 -311.07 -1.58 -30.48 16 13 C -0.33 -19.82 10.16 84.09 0.85 -18.97 16 14 H 0.07 4.77 7.38 -2.91 -0.02 4.75 16 15 C 0.00 -0.09 5.50 84.93 0.47 0.38 16 16 N -0.91 -53.68 13.96 21.67 0.30 -53.38 16 17 Si 0.94 38.36 27.74 68.60 1.90 40.26 16 18 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 20 H -0.24 -8.47 6.52 99.48 0.65 -7.82 16 21 S 0.21 6.47 22.05 -56.49 -1.25 5.23 16 22 O -0.18 -4.16 10.66 -7.00 -0.07 -4.24 16 23 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 24 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 27 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 28 H 0.17 3.81 8.06 -2.92 -0.02 3.79 16 29 H 0.15 5.09 8.03 -2.91 -0.02 5.06 16 30 H 0.38 16.79 4.83 -92.71 -0.45 16.34 16 31 H 0.29 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -74.90 296.22 4.20 -70.70 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.67 Total: 24.75 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 4.30 Total: -16.33 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -1.28 Total: -83.86 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.15 Total: -40.74 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.26 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.25 Total: 5.23 kcal Total: -74.90 4.20 -70.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182953995.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.239 kcal (2) G-P(sol) polarization free energy of solvation -74.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds