Wall clock time and date at job start Mon Mar 30 2020 01:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29505 * 1 3 3 Si 1.86793 * 120.00296 * 2 1 4 4 H 1.48503 * 109.47037 * 240.00078 * 3 2 1 5 5 H 1.48505 * 109.47257 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47528 * 120.00002 * 3 2 1 7 7 C 1.46531 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00504 * 171.65605 * 7 2 1 9 9 C 1.40360 * 119.99930 * 351.66224 * 7 2 1 10 10 C 1.41206 * 120.26176 * 325.15470 * 9 7 2 11 11 C 1.37952 * 119.52542 * 179.97438 * 10 9 7 12 12 O 1.35897 * 119.97083 * 180.02562 * 11 10 9 13 13 C 1.42903 * 116.99758 * 180.02562 * 12 11 10 14 14 F 1.39901 * 109.47168 * 59.99976 * 13 12 11 15 15 F 1.39898 * 109.47076 * 179.97438 * 13 12 11 16 16 F 1.39902 * 109.47087 * 299.99904 * 13 12 11 17 17 C 1.39355 * 120.05464 * 359.73592 * 11 10 9 18 18 C 1.38662 * 120.53477 * 0.54438 * 17 11 10 19 19 C 1.36502 * 120.48276 * 359.45012 * 18 17 11 20 20 N 1.48026 * 120.03683 * 180.25181 * 19 18 17 21 21 O 1.31699 * 119.99925 * 353.83309 * 20 19 18 22 22 O 1.31703 * 119.99736 * 173.82823 * 20 19 18 23 23 H 0.97001 * 120.00285 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.23715 * 359.96113 * 10 9 7 25 25 H 1.08000 * 119.72853 * 180.29517 * 17 11 10 26 26 H 1.07996 * 119.75261 * 179.72554 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2291 1.6176 0.0000 4 1 3.0828 1.6962 -1.2125 5 1 1.2642 2.7465 -0.0006 6 1 3.0829 1.6963 1.2125 7 6 2.0277 -1.2690 0.0006 8 1 3.0991 -1.2741 -0.1351 9 6 1.3370 -2.4780 0.1774 10 6 0.2120 -2.5370 1.0288 11 6 -0.4558 -3.7331 1.1911 12 8 -1.5398 -3.8000 2.0079 13 6 -2.1828 -5.0704 2.1298 14 9 -1.2738 -6.0067 2.6341 15 9 -3.2707 -4.9605 3.0025 16 9 -2.6331 -5.4877 0.8727 17 6 -0.0234 -4.8714 0.5134 18 6 1.0844 -4.8176 -0.3188 19 6 1.7615 -3.6456 -0.4954 20 7 2.9395 -3.5981 -1.3905 21 8 3.4085 -4.7084 -1.9213 22 8 3.5185 -2.4454 -1.6562 23 1 -0.4850 0.8400 0.0004 24 1 -0.1230 -1.6520 1.5495 25 1 -0.5531 -5.8040 0.6406 26 1 1.4111 -5.7085 -0.8344 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000199553441.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:54 Heat of formation + Delta-G solvation = -179.737903 kcal Electronic energy + Delta-G solvation = -21444.436633 eV Core-core repulsion = 17269.668247 eV Total energy + Delta-G solvation = -4174.768386 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.039 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.42541 -49.14449 -49.00650 -41.18349 -39.59345 -37.91239 -36.15635 -34.63364 -32.42205 -31.78747 -28.51347 -26.90869 -26.09426 -23.75608 -22.88572 -20.99952 -20.13861 -20.10070 -19.65380 -18.65646 -18.24078 -17.69427 -16.81621 -16.36528 -16.11282 -16.00578 -15.83622 -15.62871 -15.46321 -15.38812 -15.14886 -15.11103 -14.71681 -14.36659 -13.87559 -13.86313 -13.37513 -13.15379 -12.77249 -12.30930 -11.95422 -11.59107 -11.50257 -11.27752 -11.12664 -10.08093 -9.85794 -9.37557 -7.09193 -1.11790 0.40495 0.50079 0.69989 1.13189 1.32562 1.43681 1.50329 1.83308 2.07221 2.16949 2.79204 2.81622 3.04336 3.66234 3.93193 4.04990 4.36709 4.44379 4.61089 4.75871 5.03903 5.15105 5.21837 5.52486 5.67060 5.89697 5.97595 6.16159 6.65429 7.51108 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.006817 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.852892 B = 4106.420962 C = 5415.674012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.022 3.978 3 Si 1.005 2.995 4 H -0.262 1.262 5 H -0.241 1.241 6 H -0.242 1.242 7 C -0.291 4.291 8 H 0.122 0.878 9 C 0.066 3.934 10 C -0.126 4.126 11 C 0.120 3.880 12 O -0.313 6.313 13 C 0.608 3.392 14 F -0.164 7.164 15 F -0.128 7.128 16 F -0.165 7.165 17 C -0.253 4.253 18 C -0.008 4.008 19 C -0.112 4.112 20 N 0.036 4.964 21 O -0.404 6.404 22 O -0.327 6.327 23 H 0.329 0.671 24 H 0.148 0.852 25 H 0.150 0.850 26 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.685 1.238 7.758 11.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.163 1.163 6 H -0.165 1.165 7 C -0.318 4.318 8 H 0.140 0.860 9 C 0.061 3.939 10 C -0.147 4.147 11 C 0.077 3.923 12 O -0.233 6.233 13 C 0.517 3.483 14 F -0.146 7.146 15 F -0.109 7.109 16 F -0.147 7.147 17 C -0.275 4.275 18 C -0.028 4.028 19 C -0.218 4.218 20 N 0.437 4.563 21 O -0.535 6.535 22 O -0.475 6.475 23 H 0.144 0.856 24 H 0.165 0.835 25 H 0.167 0.833 26 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.104 1.252 7.873 12.101 hybrid contribution 0.475 -0.128 -0.530 0.723 sum -8.630 1.125 7.343 11.387 Atomic orbital electron populations 1.68975 1.10073 1.35573 1.18395 1.28843 0.95900 1.05219 0.90982 0.84868 0.79240 0.72455 0.81369 1.18617 1.16323 1.16485 1.22796 0.97916 0.89866 1.21254 0.86024 1.17151 0.92955 0.91539 0.92265 1.20565 0.96731 0.95544 1.01819 1.18580 0.86208 0.95727 0.91780 1.86361 1.42805 1.29490 1.64649 1.19254 0.76562 0.77563 0.74915 1.93296 1.67472 1.66343 1.87507 1.93295 1.52980 1.95666 1.68996 1.93295 1.89461 1.90129 1.41820 1.21078 1.02176 0.98182 1.06063 1.20113 0.92248 0.95777 0.94630 1.20305 0.95072 0.99494 1.06944 1.49793 1.03265 1.00745 1.02481 1.96029 1.73455 1.19830 1.64171 1.95985 1.64022 1.13265 1.74214 0.85592 0.83455 0.83263 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -26.54 11.31 23.21 0.26 -26.28 15 2 C 0.02 0.85 5.43 87.20 0.47 1.33 15 3 Si 1.01 28.56 29.65 68.60 2.03 30.60 15 4 H -0.26 -8.17 7.11 99.48 0.71 -7.46 15 5 H -0.24 -5.81 7.11 99.48 0.71 -5.11 15 6 H -0.24 -6.58 7.11 99.48 0.71 -5.87 15 7 C -0.29 -13.28 7.86 24.95 0.20 -13.08 15 8 H 0.12 5.87 5.87 -2.91 -0.02 5.86 15 9 C 0.07 3.13 5.52 -21.29 -0.12 3.01 15 10 C -0.13 -5.30 8.64 22.93 0.20 -5.10 15 11 C 0.12 4.60 6.47 22.47 0.15 4.74 15 12 O -0.31 -10.40 10.37 -92.39 -0.96 -11.36 15 13 C 0.61 16.77 3.42 113.37 0.39 17.16 15 14 F -0.16 -4.45 15.57 44.97 0.70 -3.75 15 15 F -0.13 -3.11 17.53 44.97 0.79 -2.32 15 16 F -0.17 -4.58 15.53 44.97 0.70 -3.88 15 17 C -0.25 -9.54 8.28 22.64 0.19 -9.35 15 18 C -0.01 -0.37 9.51 21.97 0.21 -0.16 15 19 C -0.11 -5.61 6.90 36.72 0.25 -5.36 15 20 N 0.04 2.05 4.99 -45.64 -0.23 1.83 15 21 O -0.40 -23.68 19.14 3.52 0.07 -23.61 15 22 O -0.33 -18.92 16.24 3.51 0.06 -18.87 15 23 H 0.33 10.19 8.27 -92.71 -0.77 9.43 15 24 H 0.15 5.91 6.68 -2.91 -0.02 5.89 15 25 H 0.15 4.80 5.07 -2.91 -0.01 4.78 15 26 H 0.14 5.71 7.55 -2.91 -0.02 5.69 15 Total: -1.00 -57.91 257.10 6.64 -51.27 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.28 Total: 13.20 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 1.93 Total: -6.83 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 0.03 Total: -24.45 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -0.83 Total: -53.83 kcal Atomic # 9 Polarization: -12.14 SS G_CDS: 2.19 Total: -9.95 kcal Atomic # 14 Polarization: 28.56 SS G_CDS: 2.03 Total: 30.60 kcal Total: -57.91 6.64 -51.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199553441.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.469 kcal (2) G-P(sol) polarization free energy of solvation -57.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds