Wall clock time and date at job start Mon Mar 30 2020 01:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86792 * 120.00230 * 2 1 4 4 H 1.48500 * 109.47185 * 239.99771 * 3 2 1 5 5 H 1.48496 * 109.47361 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47193 * 119.99735 * 3 2 1 7 7 C 1.37882 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99793 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46803 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47152 * 180.02562 * 10 9 7 12 12 C 1.35600 * 116.85599 * 89.99752 * 11 10 9 13 13 O 1.21615 * 122.79545 * 359.97438 * 12 11 10 14 14 S 1.78658 * 114.40779 * 180.02562 * 12 11 10 15 15 C 1.77526 * 112.60323 * 0.02562 * 14 12 11 16 16 C 1.37294 * 123.02197 * 180.02562 * 15 14 12 17 17 C 1.38499 * 119.03690 * 179.69686 * 16 15 14 18 18 C 1.38676 * 119.98464 * 0.27944 * 17 16 15 19 19 C 1.37653 * 121.30197 * 0.02562 * 18 17 16 20 20 C 1.40013 * 119.84863 * 359.97438 * 19 18 17 21 21 C 1.32260 * 116.84884 * 270.59265 * 11 10 9 22 22 O 1.21606 * 114.56119 * 359.48700 * 21 11 10 23 23 H 0.96999 * 120.00229 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47163 * 60.00603 * 9 7 2 25 25 H 1.08994 * 109.47133 * 299.99973 * 9 7 2 26 26 H 1.08997 * 109.47417 * 60.00349 * 10 9 7 27 27 H 1.08999 * 109.47763 * 300.00098 * 10 9 7 28 28 H 1.08002 * 120.48508 * 359.97438 * 16 15 14 29 29 H 1.08005 * 120.00704 * 180.25366 * 17 16 15 30 30 H 1.07998 * 119.35254 * 179.97438 * 18 17 16 31 31 H 1.08002 * 120.07189 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 -0.0001 12 6 1.2067 -5.4610 -1.2101 13 8 1.5138 -4.9283 -2.2593 14 16 0.3136 -7.0065 -1.1345 15 6 0.0061 -7.5361 0.5318 16 6 -0.6634 -8.6953 0.8369 17 6 -0.8520 -9.0324 2.1670 18 6 -0.3723 -8.2006 3.1675 19 6 0.2942 -7.0337 2.8692 20 6 0.4981 -6.6699 1.5326 21 6 1.2030 -5.4424 1.1796 22 8 1.5819 -4.7859 2.1305 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8902 26 1 2.8717 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8894 28 1 -1.0336 -9.3372 0.0513 29 1 -1.3729 -9.9427 2.4248 30 1 -0.5255 -8.4731 4.2013 31 1 0.6590 -6.4004 3.6643 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273103483.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:40 Heat of formation + Delta-G solvation = -21.608256 kcal Electronic energy + Delta-G solvation = -18574.313575 eV Core-core repulsion = 15526.844911 eV Total energy + Delta-G solvation = -3047.468664 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.36887 -39.47044 -38.25418 -35.29514 -33.30815 -31.90750 -31.42270 -30.01429 -25.75438 -25.00794 -23.52407 -23.15945 -21.58125 -19.90846 -19.05759 -17.72624 -17.06781 -16.29300 -15.96076 -15.86199 -15.12777 -14.80551 -14.44048 -14.30339 -14.18726 -14.15292 -13.25499 -12.95135 -12.58399 -12.35033 -11.97335 -11.61786 -11.11290 -10.95052 -10.86995 -10.40431 -10.38674 -10.13908 -9.94545 -9.91060 -9.39353 -9.24254 -9.08603 -8.38766 -8.19419 -6.03569 -4.07321 0.28451 0.29410 0.85111 1.54771 1.68552 2.76855 2.85271 3.34204 3.37651 3.40616 3.52960 4.21411 4.36102 4.44368 4.63726 4.85055 5.00565 5.12220 5.32963 5.51537 5.58615 5.72625 5.81170 5.94674 6.04748 6.28248 6.38898 6.64960 6.86373 7.25094 7.55932 7.66037 7.75142 7.92617 8.29595 8.96772 9.56376 11.08262 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.027242 B = 0.004909 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.562312 B = 5702.994758 C = 6314.834403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.018 3.982 10 C 0.091 3.909 11 N -0.553 5.553 12 C 0.552 3.448 13 O -0.414 6.414 14 S -0.067 6.067 15 C -0.048 4.048 16 C -0.094 4.094 17 C -0.069 4.069 18 C -0.130 4.130 19 C -0.027 4.027 20 C -0.137 4.137 21 C 0.540 3.460 22 O -0.487 6.487 23 H 0.263 0.737 24 H 0.020 0.980 25 H 0.023 0.977 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 -20.841 4.037 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.020 4.020 10 C -0.030 4.030 11 N -0.297 5.297 12 C 0.232 3.768 13 O -0.285 6.285 14 S 0.174 5.826 15 C -0.161 4.161 16 C -0.117 4.117 17 C -0.089 4.089 18 C -0.150 4.150 19 C -0.047 4.047 20 C -0.145 4.145 21 C 0.330 3.670 22 O -0.361 6.361 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.042 0.958 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.154 0.846 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.082 -20.565 2.932 20.877 hybrid contribution 0.662 1.623 0.994 2.015 sum -1.419 -18.943 3.927 19.397 Atomic orbital electron populations 1.69959 1.06163 1.26951 1.50074 1.24991 0.94880 0.99377 0.94938 0.86550 0.79505 0.82621 0.78716 1.20073 1.21201 1.20092 1.20934 0.93037 0.90204 1.51736 0.92284 1.19329 0.94073 0.90690 0.97892 1.22540 0.96800 0.79847 1.03822 1.47186 1.51550 1.25837 1.05133 1.22682 0.81175 0.87371 0.85608 1.90922 1.50773 1.57702 1.29119 1.85085 1.65978 1.24811 1.06708 1.22105 1.01333 0.98146 0.94559 1.20398 0.99071 0.94824 0.97433 1.21513 0.96587 0.99063 0.91730 1.21194 0.99014 0.94458 1.00347 1.21346 0.93371 0.95411 0.94550 1.19698 1.04922 0.94659 0.95184 1.17373 0.80544 0.85876 0.83231 1.90864 1.47955 1.56054 1.41268 0.92781 0.96178 0.95819 0.88616 0.89476 0.83836 0.84237 0.84552 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.54 13.29 55.43 0.74 -26.80 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.02 0.49 5.26 -27.89 -0.15 0.34 16 10 C 0.09 2.05 4.70 -4.04 -0.02 2.03 16 11 N -0.55 -10.94 2.53 -120.42 -0.30 -11.25 16 12 C 0.55 10.29 8.19 54.43 0.45 10.73 16 13 O -0.41 -8.66 16.77 5.26 0.09 -8.58 16 14 S -0.07 -0.94 22.03 -107.50 -2.37 -3.31 16 15 C -0.05 -0.60 6.19 -38.80 -0.24 -0.84 16 16 C -0.09 -0.84 9.93 -39.83 -0.40 -1.23 16 17 C -0.07 -0.49 10.08 -39.32 -0.40 -0.88 16 18 C -0.13 -1.07 9.96 -39.63 -0.39 -1.46 16 19 C -0.03 -0.31 9.51 -39.13 -0.37 -0.69 16 20 C -0.14 -1.99 5.88 -105.05 -0.62 -2.61 16 21 C 0.54 10.03 7.44 -14.31 -0.11 9.93 16 22 O -0.49 -10.24 14.48 5.27 0.08 -10.16 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.10 2.14 6.92 -51.93 -0.36 1.78 16 27 H 0.09 1.90 7.31 -51.93 -0.38 1.52 16 28 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.14 0.52 8.06 -52.48 -0.42 0.09 16 30 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 31 H 0.15 1.72 7.49 -52.49 -0.39 1.32 16 LS Contribution 289.88 15.07 4.37 4.37 Total: -1.00 -33.78 289.88 -7.87 -41.64 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: -2.79 Total: -4.53 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -2.65 Total: 1.53 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.43 Total: -38.05 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.16 Total: -18.74 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.37 Total: -3.31 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.78 -7.87 -41.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273103483.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.036 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds