Wall clock time and date at job start Mon Mar 30 2020 01:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86792 * 120.00230 * 2 1 4 4 H 1.48500 * 109.47185 * 239.99771 * 3 2 1 5 5 H 1.48496 * 109.47361 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47193 * 119.99735 * 3 2 1 7 7 C 1.37882 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99793 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46803 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47152 * 180.02562 * 10 9 7 12 12 C 1.35600 * 116.85599 * 89.99752 * 11 10 9 13 13 O 1.21615 * 122.79545 * 359.97438 * 12 11 10 14 14 S 1.78658 * 114.40779 * 180.02562 * 12 11 10 15 15 C 1.77526 * 112.60323 * 0.02562 * 14 12 11 16 16 C 1.37294 * 123.02197 * 180.02562 * 15 14 12 17 17 C 1.38499 * 119.03690 * 179.69686 * 16 15 14 18 18 C 1.38676 * 119.98464 * 0.27944 * 17 16 15 19 19 C 1.37653 * 121.30197 * 0.02562 * 18 17 16 20 20 C 1.40013 * 119.84863 * 359.97438 * 19 18 17 21 21 C 1.32260 * 116.84884 * 270.59265 * 11 10 9 22 22 O 1.21606 * 114.56119 * 359.48700 * 21 11 10 23 23 H 0.96999 * 120.00229 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47163 * 60.00603 * 9 7 2 25 25 H 1.08994 * 109.47133 * 299.99973 * 9 7 2 26 26 H 1.08997 * 109.47417 * 60.00349 * 10 9 7 27 27 H 1.08999 * 109.47763 * 300.00098 * 10 9 7 28 28 H 1.08002 * 120.48508 * 359.97438 * 16 15 14 29 29 H 1.08005 * 120.00704 * 180.25366 * 17 16 15 30 30 H 1.07998 * 119.35254 * 179.97438 * 18 17 16 31 31 H 1.08002 * 120.07189 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 -0.0001 12 6 1.2067 -5.4610 -1.2101 13 8 1.5138 -4.9283 -2.2593 14 16 0.3136 -7.0065 -1.1345 15 6 0.0061 -7.5361 0.5318 16 6 -0.6634 -8.6953 0.8369 17 6 -0.8520 -9.0324 2.1670 18 6 -0.3723 -8.2006 3.1675 19 6 0.2942 -7.0337 2.8692 20 6 0.4981 -6.6699 1.5326 21 6 1.2030 -5.4424 1.1796 22 8 1.5819 -4.7859 2.1305 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8902 26 1 2.8717 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8894 28 1 -1.0336 -9.3372 0.0513 29 1 -1.3729 -9.9427 2.4248 30 1 -0.5255 -8.4731 4.2013 31 1 0.6590 -6.4004 3.6643 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273103483.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:40 Heat of formation + Delta-G solvation = -44.026185 kcal Electronic energy + Delta-G solvation = -18575.285689 eV Core-core repulsion = 15526.844911 eV Total energy + Delta-G solvation = -3048.440778 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.81272 -40.64034 -39.44849 -36.91315 -35.41768 -33.18747 -32.24609 -31.77617 -27.65055 -26.38131 -25.00120 -24.06440 -23.25913 -21.43357 -20.22764 -19.03996 -18.74656 -17.78233 -17.70763 -17.00624 -16.53251 -16.21829 -15.99178 -15.64695 -15.31013 -15.20082 -14.93570 -14.50207 -14.15761 -13.70381 -13.48978 -12.93418 -12.83085 -12.74310 -12.19671 -12.17213 -12.08207 -11.74488 -11.46114 -11.32360 -11.23487 -10.90746 -10.67034 -10.21156 -9.23509 -8.30634 -6.44679 -0.94920 -0.70886 -0.07879 0.32336 0.48670 1.35604 1.41226 1.46817 1.50419 1.61904 2.35418 2.57361 3.01275 3.03265 3.48487 3.88847 3.98200 4.09111 4.18080 4.25450 4.31063 4.36290 4.62148 4.82596 4.92351 5.13109 5.24027 5.26003 5.31981 5.51253 5.63930 5.70591 5.84128 6.01485 6.32028 6.68236 7.25042 8.82481 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.027242 B = 0.004909 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.562312 B = 5702.994758 C = 6314.834403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.548 4.548 8 H 0.069 0.931 9 C 0.033 3.967 10 C 0.108 3.892 11 N -0.564 5.564 12 C 0.530 3.470 13 O -0.456 6.456 14 S -0.007 6.007 15 C -0.067 4.067 16 C -0.083 4.083 17 C -0.039 4.039 18 C -0.116 4.116 19 C -0.037 4.037 20 C -0.172 4.172 21 C 0.534 3.466 22 O -0.529 6.529 23 H 0.267 0.733 24 H -0.013 1.013 25 H -0.012 1.012 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.178 0.822 29 H 0.193 0.807 30 H 0.175 0.825 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 -23.808 5.082 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.087 0.913 9 C -0.005 4.005 10 C -0.015 4.015 11 N -0.308 5.308 12 C 0.212 3.788 13 O -0.330 6.330 14 S 0.235 5.765 15 C -0.181 4.181 16 C -0.106 4.106 17 C -0.059 4.059 18 C -0.136 4.136 19 C -0.058 4.058 20 C -0.179 4.179 21 C 0.327 3.673 22 O -0.407 6.407 23 H 0.076 0.924 24 H 0.006 0.994 25 H 0.006 0.994 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.195 0.805 29 H 0.210 0.790 30 H 0.192 0.808 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.986 -23.590 3.983 24.109 hybrid contribution 0.783 2.293 0.796 2.550 sum -2.203 -21.297 4.778 21.937 Atomic orbital electron populations 1.70109 1.08132 1.28292 1.50699 1.26080 0.95868 1.03819 0.93929 0.85315 0.78167 0.77002 0.79450 1.18767 1.20384 1.18838 1.21397 0.93798 0.91266 1.52130 0.91281 1.19052 0.94127 0.92888 0.94443 1.21980 0.95683 0.80183 1.03688 1.47232 1.51849 1.25091 1.06645 1.23443 0.81463 0.89277 0.84600 1.90881 1.52319 1.60008 1.29818 1.84769 1.63921 1.19740 1.08045 1.22374 1.03328 0.99563 0.92823 1.20949 0.97022 0.93120 0.99503 1.22159 0.93954 0.99687 0.90117 1.21666 0.96613 0.92434 1.02841 1.21499 0.94262 0.97004 0.93006 1.19524 1.07449 0.93833 0.97120 1.18273 0.79958 0.87035 0.82078 1.90819 1.50121 1.57660 1.42096 0.92437 0.99444 0.99369 0.88882 0.89207 0.80494 0.78986 0.80783 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.78 13.29 21.45 0.28 -59.49 16 2 C 0.00 0.08 5.46 84.66 0.46 0.55 16 3 Si 0.98 46.14 29.54 68.60 2.03 48.16 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.55 -33.40 9.11 25.60 0.23 -33.17 16 8 H 0.07 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.03 1.94 5.26 29.85 0.16 2.09 16 10 C 0.11 5.25 4.70 86.38 0.41 5.65 16 11 N -0.56 -24.08 2.53 -772.31 -1.95 -26.03 16 12 C 0.53 20.96 8.19 129.66 1.06 22.02 16 13 O -0.46 -20.43 16.77 -4.08 -0.07 -20.49 16 14 S -0.01 -0.18 22.03 -56.49 -1.24 -1.43 16 15 C -0.07 -1.55 6.19 22.78 0.14 -1.41 16 16 C -0.08 -1.05 9.93 22.11 0.22 -0.83 16 17 C -0.04 -0.30 10.08 22.44 0.23 -0.07 16 18 C -0.12 -1.35 9.96 22.24 0.22 -1.13 16 19 C -0.04 -0.83 9.51 22.56 0.21 -0.62 16 20 C -0.17 -5.01 5.88 -20.14 -0.12 -5.13 16 21 C 0.53 21.18 7.44 86.61 0.64 21.82 16 22 O -0.53 -24.11 14.48 -4.05 -0.06 -24.17 16 23 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 24 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 25 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 26 H 0.09 4.51 6.92 -2.39 -0.02 4.49 16 27 H 0.09 4.25 7.31 -2.39 -0.02 4.23 16 28 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 29 H 0.19 -0.33 8.06 -2.91 -0.02 -0.35 16 30 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 31 H 0.14 3.25 7.49 -2.91 -0.02 3.23 16 Total: -1.00 -81.11 289.88 4.02 -77.09 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: 1.16 Total: -3.40 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 3.87 Total: 9.76 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -1.67 Total: -85.53 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -0.13 Total: -44.66 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -1.24 Total: -1.43 kcal Total: -81.11 4.02 -77.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273103483.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.068 kcal (2) G-P(sol) polarization free energy of solvation -81.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds