Wall clock time and date at job start Mon Mar 30 2020 01:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.37774 * 120.04458 * 2 1 4 4 C 1.38923 * 120.09292 * 179.97438 * 3 2 1 5 5 O 1.35807 * 119.90416 * 180.02562 * 4 3 2 6 6 C 1.34296 * 116.99920 * 249.01267 * 5 4 3 7 7 O 1.20826 * 119.99624 * 5.77076 * 6 5 4 8 8 C 1.50693 * 119.99946 * 185.77545 * 6 5 4 9 9 S 1.80997 * 109.47210 * 179.97438 * 8 6 5 10 10 C 1.76199 * 100.00030 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00174 * 0.02562 * 10 9 8 12 12 C 1.38805 * 119.99831 * 179.97438 * 10 9 8 13 13 N 1.31630 * 119.99514 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00025 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47189 * 90.00275 * 14 12 10 16 16 H 1.48505 * 109.47188 * 209.99820 * 14 12 10 17 17 H 1.48501 * 109.47394 * 329.99955 * 14 12 10 18 18 C 1.38970 * 120.18993 * 359.75422 * 4 3 2 19 19 C 1.37730 * 120.09301 * 0.50131 * 18 4 3 20 20 C 1.39709 * 120.04832 * 179.97438 * 2 1 3 21 21 C 1.43205 * 120.09613 * 0.02562 * 20 2 1 22 22 N 3.48493 * 80.43936 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.47040 * 270.02112 * 1 2 3 24 24 H 1.08997 * 109.46810 * 30.02558 * 1 2 3 25 25 H 1.09002 * 109.46797 * 150.02256 * 1 2 3 26 26 H 1.08001 * 119.95572 * 359.95664 * 3 2 1 27 27 H 1.09007 * 109.46877 * 299.99697 * 8 6 5 28 28 H 1.09002 * 109.47435 * 59.99588 * 8 6 5 29 29 H 0.97004 * 119.99499 * 180.02562 * 13 12 10 30 30 H 1.07998 * 119.95269 * 180.24775 * 18 4 3 31 31 H 1.07999 * 120.04532 * 179.77005 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1926 0.0000 4 6 3.5861 1.1938 0.0005 5 8 4.2622 2.3716 0.0011 6 6 4.9378 2.6873 -1.1158 7 8 4.8417 1.9895 -2.0975 8 6 5.8158 3.9117 -1.1446 9 16 6.5852 4.0641 -2.7758 10 6 7.5262 5.5341 -2.5340 11 1 7.4993 6.0419 -1.5813 12 6 8.3030 6.0387 -3.5678 13 7 9.0063 7.1365 -3.3870 14 14 8.3501 5.1599 -5.2155 15 1 7.2778 5.6947 -6.0925 16 1 9.6709 5.3816 -5.8572 17 1 8.1393 3.7049 -5.0067 18 6 4.2860 -0.0068 0.0062 19 6 3.6043 -1.2036 0.0009 20 6 2.2067 -1.2093 0.0005 21 6 1.4938 -2.4513 0.0005 22 7 0.9283 -3.4365 0.0015 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6569 2.1279 -0.0007 27 1 5.2120 4.7966 -0.9432 28 1 6.5917 3.8205 -0.3844 29 1 9.5489 7.4894 -4.1096 30 1 5.3659 -0.0014 0.0107 31 1 4.1489 -2.1361 0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278044702.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:37 Heat of formation + Delta-G solvation = -25.537322 kcal Electronic energy + Delta-G solvation = -17468.054934 eV Core-core repulsion = 14420.415893 eV Total energy + Delta-G solvation = -3047.639041 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.43031 -39.46127 -37.15588 -36.33249 -33.17174 -32.56154 -31.39125 -29.77167 -27.65729 -25.77531 -24.35982 -22.72510 -21.16784 -19.09184 -18.20338 -17.91830 -17.07305 -16.50889 -15.37313 -15.13005 -14.87998 -14.71321 -14.56257 -14.08881 -13.67783 -13.47440 -13.45022 -13.34877 -12.91438 -12.89593 -12.61897 -12.33275 -12.10919 -11.80300 -11.41656 -11.11281 -11.02213 -10.84108 -10.49925 -9.95197 -9.29544 -9.12335 -8.98842 -8.71820 -7.12133 -6.40122 -4.15861 0.23625 0.89579 2.11430 2.24404 2.34837 2.64195 3.02286 3.24236 3.39511 3.41432 3.50791 3.54941 4.20969 4.26058 4.38509 4.44717 4.70042 4.85714 4.96124 4.98719 5.13031 5.18618 5.27765 5.45816 5.50291 5.62110 5.73136 5.81013 5.91201 5.94419 6.14582 6.55150 7.15982 7.82084 7.84070 8.31253 9.04538 10.68780 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.040936 B = 0.003329 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.826098 B = 8408.912041 C = 8623.998310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.020 4.020 3 C -0.123 4.123 4 C 0.131 3.869 5 O -0.297 6.297 6 C 0.478 3.522 7 O -0.466 6.466 8 C -0.099 4.099 9 S -0.136 6.136 10 C -0.525 4.525 11 H 0.093 0.907 12 C 0.098 3.902 13 N -0.875 5.875 14 Si 0.856 3.144 15 H -0.266 1.266 16 H -0.272 1.272 17 H -0.236 1.236 18 C -0.133 4.133 19 C -0.047 4.047 20 C -0.042 4.042 21 C 0.261 3.739 22 N -0.420 5.420 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.145 0.855 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.273 0.727 30 H 0.141 0.859 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.725 -12.005 8.671 19.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.023 4.023 3 C -0.141 4.141 4 C 0.088 3.912 5 O -0.213 6.213 6 C 0.319 3.681 7 O -0.348 6.348 8 C -0.246 4.246 9 S 0.090 5.910 10 C -0.672 4.672 11 H 0.111 0.889 12 C -0.111 4.111 13 N -0.511 5.511 14 Si 0.680 3.320 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.160 1.160 18 C -0.151 4.151 19 C -0.067 4.067 20 C -0.045 4.045 21 C -0.054 4.054 22 N -0.095 5.095 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.162 0.838 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.083 0.917 30 H 0.159 0.841 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.611 -14.273 7.349 21.047 hybrid contribution 0.644 1.062 0.335 1.287 sum -12.967 -13.210 7.685 20.043 Atomic orbital electron populations 1.20930 0.89834 1.03805 1.03358 1.19718 0.96385 0.90644 0.95568 1.20916 0.92144 0.98662 1.02380 1.18820 0.90572 0.84428 0.97341 1.84640 1.59781 1.36178 1.40743 1.23772 0.77655 0.86780 0.79852 1.90726 1.59304 1.50749 1.33999 1.23055 1.00181 0.95061 1.06326 1.84871 1.58016 1.37388 1.10704 1.22238 1.31668 1.09215 1.04062 0.88914 1.24693 0.93574 0.94203 0.98668 1.69928 1.27523 1.20014 1.33613 0.86759 0.78671 0.82682 0.83861 1.19073 1.19718 1.15963 1.21301 1.01308 0.91078 1.01436 1.20988 0.91631 0.98576 0.95541 1.15941 0.92241 0.86580 1.09766 1.25545 0.93390 0.92744 0.93683 1.81260 1.08480 1.10808 1.08976 0.89970 0.90069 0.91261 0.83773 0.86714 0.86649 0.91725 0.84104 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.61 36.01 0.35 -0.47 16 2 C -0.02 -0.18 5.91 -104.24 -0.62 -0.80 16 3 C -0.12 -1.20 9.62 -39.50 -0.38 -1.58 16 4 C 0.13 1.56 5.27 -39.06 -0.21 1.35 16 5 O -0.30 -4.01 10.03 -23.34 -0.23 -4.24 16 6 C 0.48 7.76 7.75 36.00 0.28 8.04 16 7 O -0.47 -8.79 15.28 -18.75 -0.29 -9.08 16 8 C -0.10 -1.73 6.27 36.00 0.23 -1.50 16 9 S -0.14 -3.16 18.55 -107.50 -1.99 -5.16 16 10 C -0.52 -14.21 10.04 30.94 0.31 -13.89 16 11 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 12 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 13 N -0.87 -25.32 13.97 55.49 0.78 -24.55 16 14 Si 0.86 20.63 27.74 -169.99 -4.71 15.91 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.24 -5.62 6.74 56.52 0.38 -5.24 16 18 C -0.13 -1.41 9.32 -39.50 -0.37 -1.78 16 19 C -0.05 -0.42 9.75 -39.20 -0.38 -0.80 16 20 C -0.04 -0.39 5.74 -106.85 -0.61 -1.00 16 21 C 0.26 2.70 13.79 -22.47 -0.31 2.39 16 22 N -0.42 -5.13 18.54 41.84 0.78 -4.35 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 25 H 0.07 0.50 7.09 -51.93 -0.37 0.13 16 26 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 27 H 0.11 1.85 8.14 -51.91 -0.42 1.43 16 28 H 0.12 1.85 8.14 -51.91 -0.42 1.43 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 303.73 15.07 4.58 4.58 Total: -1.00 -31.16 303.73 -5.81 -36.97 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -2.90 Total: -2.67 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.81 Total: -7.41 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 1.55 Total: -28.90 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.52 Total: -13.32 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.71 Total: 15.91 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -1.99 Total: -5.16 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.16 -5.81 -36.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278044702.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.432 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds