Wall clock time and date at job start Mon Mar 30 2020 01:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00443 * 2 1 4 4 N 1.46499 * 109.47293 * 124.99921 * 3 2 1 5 5 C 1.46499 * 120.00136 * 270.00491 * 4 3 2 6 6 C 1.50703 * 109.47219 * 269.99493 * 5 4 3 7 7 H 1.07996 * 119.99587 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00012 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99655 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99994 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.46889 * 90.00281 * 10 8 6 12 12 H 1.48510 * 109.46825 * 210.00042 * 10 8 6 13 13 H 1.48494 * 109.47200 * 329.99914 * 10 8 6 14 14 C 1.34784 * 119.99893 * 90.00297 * 4 3 2 15 15 O 1.21274 * 119.99897 * 179.73022 * 14 4 3 16 16 C 1.50695 * 119.99635 * 0.02562 * 14 4 3 17 17 H 1.08994 * 115.55340 * 34.33159 * 16 14 4 18 18 C 1.53001 * 117.50091 * 248.61979 * 16 14 4 19 19 C 1.53000 * 60.00105 * 252.51523 * 18 16 14 20 20 Cl 1.80297 * 117.49683 * 252.50585 * 19 18 16 21 21 Cl 1.80299 * 117.49936 * 107.49043 * 19 18 16 22 22 H 1.07997 * 120.00252 * 179.97438 * 1 2 3 23 23 H 1.08001 * 119.99691 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.99691 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.46951 * 5.00236 * 3 2 1 26 26 H 1.08998 * 109.47681 * 245.00289 * 3 2 1 27 27 H 1.08998 * 109.47416 * 29.99674 * 5 4 3 28 28 H 1.09008 * 109.47058 * 150.00274 * 5 4 3 29 29 H 0.97008 * 119.99482 * 180.02562 * 9 8 6 30 30 H 1.09006 * 117.49589 * 0.02562 * 18 16 14 31 31 H 1.08995 * 117.49915 * 145.02054 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8444 3.3435 2.4805 7 1 3.3042 3.8367 1.6369 8 6 2.5196 4.0663 3.6088 9 7 2.7683 5.3568 3.6571 10 14 1.7262 3.2126 5.0687 11 1 2.7829 2.7223 5.9895 12 1 0.8499 4.1725 5.7871 13 1 0.9151 2.0646 4.5899 14 6 4.2498 0.8660 0.9823 15 8 5.0214 0.8927 1.9176 16 6 4.6972 0.3182 -0.3483 17 1 4.2719 0.8069 -1.2249 18 6 4.9679 -1.1849 -0.4387 19 6 6.1346 -0.1953 -0.4536 20 17 6.9951 0.0535 -2.0183 21 17 7.1634 -0.0988 1.0239 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8499 -0.9353 -0.0004 25 1 1.3587 2.1316 0.0896 26 1 2.6213 1.4026 -0.9313 27 1 1.4888 1.6965 2.5460 28 1 3.0991 1.3601 3.2260 29 1 2.5401 5.8653 4.4510 30 1 4.8219 -1.7777 0.4644 31 1 4.7204 -1.6855 -1.3747 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292531789.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:18 Heat of formation + Delta-G solvation = -2.710368 kcal Electronic energy + Delta-G solvation = -17386.166835 eV Core-core repulsion = 14335.041089 eV Total energy + Delta-G solvation = -3051.125746 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 277.038 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.09956 -38.36146 -37.22550 -36.90471 -36.10701 -34.98101 -33.71834 -30.45573 -26.96080 -26.05435 -23.57568 -23.05356 -21.10625 -19.80182 -19.10773 -18.66928 -17.44216 -16.59356 -16.32129 -16.00104 -15.68647 -15.07222 -14.58489 -14.32841 -14.08592 -13.99996 -13.54838 -13.39244 -13.14492 -13.02512 -12.71797 -12.50919 -12.24002 -12.10033 -11.92871 -11.86138 -11.73048 -11.52734 -10.97198 -10.82498 -10.34297 -10.24378 -9.42448 -8.33296 -6.38014 0.17078 1.15138 1.31946 1.36388 1.38097 1.44714 1.48307 2.30328 2.31159 2.42076 3.01476 3.03316 3.34947 3.63895 4.07045 4.13237 4.28800 4.49462 4.55089 4.69604 4.80437 4.89227 4.96794 5.12716 5.46510 5.53824 5.77060 5.97078 6.24248 6.63308 6.65905 7.21869 7.39451 8.83679 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.018363 B = 0.006144 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.403722 B = 4556.308916 C = 5416.837026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.177 4.177 3 C 0.129 3.871 4 N -0.589 5.589 5 C 0.231 3.769 6 C -0.534 4.534 7 H 0.029 0.971 8 C 0.012 3.988 9 N -0.946 5.946 10 Si 0.945 3.055 11 H -0.277 1.277 12 H -0.276 1.276 13 H -0.237 1.237 14 C 0.521 3.479 15 O -0.558 6.558 16 C -0.161 4.161 17 H 0.167 0.833 18 C -0.082 4.082 19 C 0.006 3.994 20 Cl -0.087 7.087 21 Cl -0.090 7.090 22 H 0.118 0.882 23 H 0.095 0.905 24 H 0.124 0.876 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.047 0.953 28 H 0.020 0.980 29 H 0.268 0.732 30 H 0.125 0.875 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 -16.975 -12.713 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.196 4.196 3 C 0.007 3.993 4 N -0.319 5.319 5 C 0.109 3.891 6 C -0.572 4.572 7 H 0.047 0.953 8 C -0.186 4.186 9 N -0.586 5.586 10 Si 0.768 3.232 11 H -0.203 1.203 12 H -0.201 1.201 13 H -0.160 1.160 14 C 0.308 3.692 15 O -0.436 6.436 16 C -0.183 4.183 17 H 0.184 0.816 18 C -0.119 4.119 19 C -0.046 4.046 20 Cl -0.060 7.060 21 Cl -0.062 7.062 22 H 0.136 0.864 23 H 0.113 0.887 24 H 0.142 0.858 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.702 -16.755 -12.114 20.687 hybrid contribution 0.181 0.767 0.879 1.180 sum -0.521 -15.988 -11.235 19.548 Atomic orbital electron populations 1.24067 0.95654 1.02833 0.98438 1.23298 0.96564 0.98066 1.01704 1.20887 0.92651 0.96779 0.88942 1.47876 1.11528 1.59588 1.12888 1.19263 0.95398 0.91957 0.82517 1.21565 1.40326 0.93573 1.01749 0.95266 1.25822 0.95996 0.95320 1.01492 1.70057 1.49539 1.08543 1.30460 0.85760 0.79061 0.79428 0.78987 1.20317 1.20137 1.15979 1.19907 0.81860 0.78343 0.89079 1.90786 1.52679 1.57103 1.43010 1.23147 0.95023 1.01256 0.98834 0.81601 1.24126 0.90103 0.89327 1.08369 1.26567 0.85461 1.11357 0.81240 1.98738 1.80138 1.97368 1.29731 1.98787 1.71288 1.98519 1.37652 0.86361 0.88676 0.85807 0.90740 0.87922 0.93513 0.96152 0.92354 0.85636 0.81164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 14.32 67.79 0.97 -2.31 16 2 C -0.18 -3.76 9.85 25.65 0.25 -3.51 16 3 C 0.13 3.59 5.67 85.63 0.49 4.07 16 4 N -0.59 -22.52 2.44 -830.51 -2.03 -24.54 16 5 C 0.23 10.93 4.23 85.63 0.36 11.29 16 6 C -0.53 -31.05 9.94 25.60 0.25 -30.79 16 7 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 8 C 0.01 0.68 5.47 84.65 0.46 1.15 16 9 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 10 Si 0.94 44.30 27.47 68.60 1.88 46.19 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 14 C 0.52 19.61 7.45 87.65 0.65 20.26 16 15 O -0.56 -26.10 13.28 -3.01 -0.04 -26.14 16 16 C -0.16 -4.05 5.13 -11.54 -0.06 -4.11 16 17 H 0.17 3.29 6.44 -2.39 -0.02 3.28 16 18 C -0.08 -1.41 9.92 30.59 0.30 -1.11 16 19 C 0.01 0.15 3.61 30.60 0.11 0.26 16 20 Cl -0.09 -1.93 29.29 -2.72 -0.08 -2.01 16 21 Cl -0.09 -2.98 26.13 -2.72 -0.07 -3.05 16 22 H 0.12 1.73 8.06 -2.91 -0.02 1.70 16 23 H 0.09 1.89 7.84 -2.91 -0.02 1.87 16 24 H 0.12 2.20 8.06 -2.91 -0.02 2.17 16 25 H 0.07 2.29 7.72 -2.39 -0.02 2.27 16 26 H 0.10 2.25 5.99 -2.39 -0.01 2.24 16 27 H 0.05 2.06 7.13 -2.39 -0.02 2.05 16 28 H 0.02 1.04 6.85 -2.38 -0.02 1.02 16 29 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 30 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.17 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -75.11 299.65 4.84 -70.26 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.08 Total: 3.72 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 3.80 Total: -4.80 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.73 Total: -84.17 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.04 Total: -26.14 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.19 kcal Atomic # 17 Polarization: -4.90 SS G_CDS: -0.15 Total: -5.05 kcal Total: -75.11 4.84 -70.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292531789.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.553 kcal (2) G-P(sol) polarization free energy of solvation -75.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds