Wall clock time and date at job start Mon Mar 30 2020 01:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 119.99985 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27658 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27573 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.28000 * 3 2 1 7 7 C 1.38805 * 119.99846 * 180.28098 * 2 1 3 8 8 H 1.08000 * 119.99635 * 359.71891 * 7 2 1 9 9 S 1.76192 * 119.99929 * 179.72260 * 7 2 1 10 10 C 1.81001 * 100.00053 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00404 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99843 * 179.97438 * 11 10 9 14 14 C 1.47024 * 125.64637 * 359.69088 * 13 11 10 15 15 C 1.54331 * 107.26491 * 178.84771 * 14 13 11 16 16 C 1.55157 * 103.02216 * 338.14643 * 15 14 13 17 17 F 1.39902 * 111.00118 * 277.22986 * 16 15 14 18 18 C 1.50704 * 111.00637 * 153.38005 * 16 15 14 19 19 O 1.20824 * 119.99574 * 1.34677 * 18 16 15 20 20 O 1.34225 * 119.99942 * 181.34665 * 18 16 15 21 21 C 1.47429 * 125.65060 * 180.02562 * 13 11 10 22 22 H 0.97000 * 120.00210 * 359.72456 * 1 2 3 23 23 H 1.08998 * 109.46924 * 299.99540 * 10 9 7 24 24 H 1.08996 * 109.46816 * 60.00287 * 10 9 7 25 25 H 1.08996 * 109.88553 * 298.39427 * 14 13 11 26 26 H 1.09001 * 109.88111 * 59.56071 * 14 13 11 27 27 H 1.08999 * 110.85622 * 219.67291 * 15 14 13 28 28 H 1.09005 * 110.51393 * 96.45327 * 15 14 13 29 29 H 0.96698 * 116.99922 * 179.97438 * 20 18 16 30 30 H 1.08995 * 110.36075 * 322.93380 * 21 13 11 31 31 H 1.09005 * 110.36439 * 85.25334 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4920 2.0498 -1.4001 5 1 1.4506 2.6510 0.7059 6 1 3.5508 1.4385 0.6941 7 6 2.0103 -1.2021 -0.0059 8 1 1.4703 -2.1374 -0.0059 9 16 3.7722 -1.2021 -0.0133 10 6 4.0865 -2.9846 -0.0182 11 6 5.5730 -3.2325 -0.0256 12 8 6.3440 -2.2963 -0.0269 13 7 6.0457 -4.4947 -0.0297 14 6 5.2273 -5.7161 -0.0213 15 6 6.1961 -6.9168 -0.0599 16 6 7.4922 -6.3014 -0.6505 17 9 7.4299 -6.2462 -2.0471 18 6 8.7089 -7.0658 -0.1961 19 8 8.5829 -8.0352 0.5140 20 8 9.9325 -6.6698 -0.5804 21 6 7.4689 -4.8793 -0.0365 22 1 -0.4850 0.8400 0.0040 23 1 3.6474 -3.4334 0.8727 24 1 3.6399 -3.4297 -0.9073 25 1 4.6249 -5.7525 0.8863 26 1 4.5810 -5.7353 -0.8988 27 1 5.8126 -7.7042 -0.7088 28 1 6.3735 -7.2971 0.9461 29 1 10.6825 -7.1914 -0.2634 30 1 8.0450 -4.1900 -0.6537 31 1 7.8615 -4.8983 0.9802 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309341604.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:36 Heat of formation + Delta-G solvation = -163.681678 kcal Electronic energy + Delta-G solvation = -19109.625591 eV Core-core repulsion = 15625.226936 eV Total energy + Delta-G solvation = -3484.398655 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.062 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.40478 -40.89617 -39.69600 -37.26227 -36.64006 -32.46728 -32.09430 -30.13571 -28.99723 -25.68597 -24.93735 -23.49240 -21.02659 -19.73798 -18.89848 -18.08005 -17.84067 -17.03967 -16.57267 -15.94611 -15.53586 -15.44073 -15.03172 -14.88413 -14.53763 -14.09810 -13.88504 -13.26649 -13.15594 -12.94043 -12.78077 -12.25160 -12.18596 -12.08769 -11.90110 -11.55768 -11.29806 -11.08775 -11.02754 -10.65170 -9.89453 -9.68750 -9.02762 -8.84228 -8.54581 -6.96207 -6.31367 -4.03925 1.37130 2.04113 2.59837 2.78917 3.09360 3.31793 3.36366 3.48609 3.54541 3.61937 4.05851 4.30738 4.42906 4.53334 4.59537 4.75089 5.03521 5.07726 5.21989 5.23200 5.36159 5.39363 5.52755 5.72351 5.80584 5.94276 6.01365 7.17512 7.31185 7.91568 8.25005 8.39025 9.14611 10.77808 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.046183 B = 0.003751 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.136844 B = 7462.894166 C = 7785.502093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.141 6.141 10 C -0.118 4.118 11 C 0.552 3.448 12 O -0.510 6.510 13 N -0.625 5.625 14 C 0.099 3.901 15 C -0.136 4.136 16 C 0.117 3.883 17 F -0.167 7.167 18 C 0.482 3.518 19 O -0.489 6.489 20 O -0.499 6.499 21 C 0.099 3.901 22 H 0.271 0.729 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.417 0.583 30 H 0.106 0.894 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.003 -16.362 0.003 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.107 0.893 9 S 0.086 5.914 10 C -0.268 4.268 11 C 0.341 3.659 12 O -0.384 6.384 13 N -0.363 5.363 14 C -0.024 4.024 15 C -0.173 4.173 16 C 0.097 3.903 17 F -0.147 7.147 18 C 0.321 3.679 19 O -0.375 6.375 20 O -0.311 6.311 21 C -0.025 4.025 22 H 0.081 0.919 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.277 0.723 30 H 0.124 0.876 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.556 -14.796 0.020 22.204 hybrid contribution -0.293 -0.815 0.017 0.866 sum 16.263 -15.611 0.037 22.543 Atomic orbital electron populations 1.69936 1.05913 1.27821 1.47928 1.24706 0.94446 0.98964 0.93122 0.86739 0.81895 0.83285 0.79970 1.19156 1.19892 1.15925 1.22294 0.88093 0.97587 1.58971 0.89311 1.84814 1.09509 0.99665 1.97438 1.23261 0.92998 1.04577 1.05984 1.20067 0.90817 0.80117 0.74918 1.90727 1.58826 1.40949 1.47878 1.48403 1.05666 1.05868 1.76395 1.22138 0.94033 0.82349 1.03888 1.23268 0.91139 0.98511 1.04431 1.21751 0.92425 0.97876 0.78292 1.93000 1.96970 1.97195 1.27554 1.23109 0.84697 0.82526 0.77594 1.90776 1.86759 1.25558 1.34405 1.84580 1.16691 1.58914 1.70943 1.22576 0.85653 0.92037 1.02199 0.91891 0.88230 0.88249 0.89520 0.89899 0.87452 0.87059 0.72261 0.87597 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.29 13.97 55.49 0.78 -25.52 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.56 27.74 -169.99 -4.71 16.85 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 7 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 10 C -0.12 -2.24 5.35 36.01 0.19 -2.04 16 11 C 0.55 9.78 7.87 -10.98 -0.09 9.70 16 12 O -0.51 -10.90 16.12 5.55 0.09 -10.81 16 13 N -0.62 -8.21 3.33 -170.50 -0.57 -8.78 16 14 C 0.10 0.93 6.49 -3.06 -0.02 0.91 16 15 C -0.14 -1.05 5.88 -24.89 -0.15 -1.19 16 16 C 0.12 1.10 1.59 -89.61 -0.14 0.96 16 17 F -0.17 -1.87 17.01 2.25 0.04 -1.84 16 18 C 0.48 4.18 7.42 36.01 0.27 4.45 16 19 O -0.49 -5.05 16.48 -18.75 -0.31 -5.36 16 20 O -0.50 -3.31 13.42 -39.24 -0.53 -3.84 16 21 C 0.10 1.09 6.17 -2.52 -0.02 1.08 16 22 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 23 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 24 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.11 0.78 7.41 -51.93 -0.38 0.39 16 29 H 0.42 0.74 9.10 45.56 0.41 1.16 16 30 H 0.11 1.27 8.04 -51.93 -0.42 0.86 16 31 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 LS Contribution 293.50 15.07 4.42 4.42 Total: -1.00 -35.56 293.50 -5.02 -40.58 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -2.49 Total: -2.24 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 0.26 Total: 2.04 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.21 Total: -34.29 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.75 Total: -20.01 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.85 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -35.56 -5.02 -40.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309341604.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.105 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds