Wall clock time and date at job start Mon Mar 30 2020 01:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 119.99985 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27658 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27573 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.28000 * 3 2 1 7 7 C 1.38805 * 119.99846 * 180.28098 * 2 1 3 8 8 H 1.08000 * 119.99635 * 359.71891 * 7 2 1 9 9 S 1.76192 * 119.99929 * 179.72260 * 7 2 1 10 10 C 1.81001 * 100.00053 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00404 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99843 * 179.97438 * 11 10 9 14 14 C 1.47024 * 125.64637 * 359.69088 * 13 11 10 15 15 C 1.54331 * 107.26491 * 178.84771 * 14 13 11 16 16 C 1.55157 * 103.02216 * 338.14643 * 15 14 13 17 17 F 1.39902 * 111.00118 * 277.22986 * 16 15 14 18 18 C 1.50704 * 111.00637 * 153.38005 * 16 15 14 19 19 O 1.20824 * 119.99574 * 1.34677 * 18 16 15 20 20 O 1.34225 * 119.99942 * 181.34665 * 18 16 15 21 21 C 1.47429 * 125.65060 * 180.02562 * 13 11 10 22 22 H 0.97000 * 120.00210 * 359.72456 * 1 2 3 23 23 H 1.08998 * 109.46924 * 299.99540 * 10 9 7 24 24 H 1.08996 * 109.46816 * 60.00287 * 10 9 7 25 25 H 1.08996 * 109.88553 * 298.39427 * 14 13 11 26 26 H 1.09001 * 109.88111 * 59.56071 * 14 13 11 27 27 H 1.08999 * 110.85622 * 219.67291 * 15 14 13 28 28 H 1.09005 * 110.51393 * 96.45327 * 15 14 13 29 29 H 0.96698 * 116.99922 * 179.97438 * 20 18 16 30 30 H 1.08995 * 110.36075 * 322.93380 * 21 13 11 31 31 H 1.09005 * 110.36439 * 85.25334 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4920 2.0498 -1.4001 5 1 1.4506 2.6510 0.7059 6 1 3.5508 1.4385 0.6941 7 6 2.0103 -1.2021 -0.0059 8 1 1.4703 -2.1374 -0.0059 9 16 3.7722 -1.2021 -0.0133 10 6 4.0865 -2.9846 -0.0182 11 6 5.5730 -3.2325 -0.0256 12 8 6.3440 -2.2963 -0.0269 13 7 6.0457 -4.4947 -0.0297 14 6 5.2273 -5.7161 -0.0213 15 6 6.1961 -6.9168 -0.0599 16 6 7.4922 -6.3014 -0.6505 17 9 7.4299 -6.2462 -2.0471 18 6 8.7089 -7.0658 -0.1961 19 8 8.5829 -8.0352 0.5140 20 8 9.9325 -6.6698 -0.5804 21 6 7.4689 -4.8793 -0.0365 22 1 -0.4850 0.8400 0.0040 23 1 3.6474 -3.4334 0.8727 24 1 3.6399 -3.4297 -0.9073 25 1 4.6249 -5.7525 0.8863 26 1 4.5810 -5.7353 -0.8988 27 1 5.8126 -7.7042 -0.7088 28 1 6.3735 -7.2971 0.9461 29 1 10.6825 -7.1914 -0.2634 30 1 8.0450 -4.1900 -0.6537 31 1 7.8615 -4.8983 0.9802 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309341604.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:36 Heat of formation + Delta-G solvation = -189.906470 kcal Electronic energy + Delta-G solvation = -19110.762783 eV Core-core repulsion = 15625.226936 eV Total energy + Delta-G solvation = -3485.535847 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.062 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.21437 -41.61745 -40.83971 -38.29036 -37.33935 -34.66886 -33.18129 -31.11828 -30.15442 -27.86552 -25.88706 -24.29312 -21.74826 -20.99000 -19.71500 -19.55810 -18.74667 -18.28314 -17.58835 -17.12475 -17.03544 -16.47904 -16.30900 -15.87174 -15.66022 -15.48864 -15.04271 -14.89887 -14.18318 -14.04217 -13.93478 -13.50390 -13.33727 -13.01270 -12.97218 -12.80023 -12.69578 -12.58383 -12.31527 -11.88891 -11.77829 -11.16614 -11.13427 -10.54597 -9.91690 -9.01048 -8.51162 -6.22532 0.68294 0.92762 1.32324 1.33082 1.41965 1.49694 1.60418 1.99725 2.25367 2.57642 2.69397 2.87340 2.88566 3.34045 3.59434 3.75113 3.93437 4.04269 4.17970 4.38373 4.40137 4.49634 4.62631 4.71843 4.89731 5.06082 5.29680 5.71280 6.11910 6.13406 6.70039 6.91590 6.94261 8.61154 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.046183 B = 0.003751 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.136844 B = 7462.894166 C = 7785.502093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.528 4.528 8 H 0.065 0.935 9 S -0.175 6.175 10 C -0.103 4.103 11 C 0.554 3.446 12 O -0.556 6.556 13 N -0.617 5.617 14 C 0.089 3.911 15 C -0.125 4.125 16 C 0.116 3.884 17 F -0.179 7.179 18 C 0.492 3.508 19 O -0.505 6.505 20 O -0.499 6.499 21 C 0.095 3.905 22 H 0.277 0.723 23 H 0.118 0.882 24 H 0.114 0.886 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.439 0.561 30 H 0.092 0.908 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.244 -17.682 0.253 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.160 1.160 7 C -0.675 4.675 8 H 0.083 0.917 9 S 0.051 5.949 10 C -0.254 4.254 11 C 0.342 3.658 12 O -0.434 6.434 13 N -0.353 5.353 14 C -0.033 4.033 15 C -0.162 4.162 16 C 0.096 3.904 17 F -0.159 7.159 18 C 0.331 3.669 19 O -0.393 6.393 20 O -0.314 6.314 21 C -0.028 4.028 22 H 0.087 0.913 23 H 0.136 0.864 24 H 0.132 0.868 25 H 0.123 0.877 26 H 0.108 0.892 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.303 0.697 30 H 0.110 0.890 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.819 -16.179 0.270 24.069 hybrid contribution -0.599 -0.597 -0.082 0.850 sum 17.219 -16.776 0.188 24.041 Atomic orbital electron populations 1.70012 1.07282 1.29039 1.49100 1.25537 0.95239 1.02192 0.92877 0.85890 0.80736 0.79717 0.80194 1.18764 1.18326 1.16019 1.22437 0.90031 0.96776 1.58299 0.91723 1.84744 1.06702 1.05819 1.97592 1.23211 0.94739 0.99786 1.07616 1.19685 0.89756 0.81202 0.75111 1.90709 1.59394 1.42748 1.50521 1.48279 1.07448 1.05467 1.74110 1.22485 0.94395 0.81238 1.05181 1.23301 0.89555 0.97934 1.05458 1.21807 0.93990 0.97037 0.77568 1.92979 1.97118 1.97201 1.28610 1.22784 0.84979 0.81991 0.77110 1.90781 1.87049 1.26227 1.35206 1.84539 1.16889 1.59276 1.70676 1.22728 0.84034 0.92839 1.03248 0.91346 0.86380 0.86810 0.87738 0.89205 0.85590 0.85818 0.69745 0.88955 0.87371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.27 13.97 21.65 0.30 -54.96 16 2 C 0.05 2.73 5.50 84.86 0.47 3.20 16 3 Si 0.91 44.54 27.74 68.60 1.90 46.45 16 4 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.24 -11.49 6.74 99.48 0.67 -10.82 16 7 C -0.53 -30.26 10.04 67.96 0.68 -29.58 16 8 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 9 S -0.18 -8.73 18.55 -56.49 -1.05 -9.78 16 10 C -0.10 -3.79 5.35 71.24 0.38 -3.41 16 11 C 0.55 19.04 7.87 87.66 0.69 19.73 16 12 O -0.56 -23.65 16.12 -3.04 -0.05 -23.70 16 13 N -0.62 -15.05 3.33 -811.73 -2.70 -17.75 16 14 C 0.09 1.42 6.49 86.73 0.56 1.98 16 15 C -0.12 -1.53 5.88 31.79 0.19 -1.34 16 16 C 0.12 1.92 1.59 -10.14 -0.02 1.90 16 17 F -0.18 -3.68 17.01 44.97 0.76 -2.92 16 18 C 0.49 7.32 7.42 71.24 0.53 7.85 16 19 O -0.50 -9.09 16.48 21.97 0.36 -8.73 16 20 O -0.50 -5.43 13.42 -51.37 -0.69 -6.11 16 21 C 0.09 1.91 6.17 86.86 0.54 2.45 16 22 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 23 H 0.12 3.91 8.14 -2.40 -0.02 3.89 16 24 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 25 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.13 1.14 8.14 -2.39 -0.02 1.13 16 28 H 0.12 1.28 7.41 -2.38 -0.02 1.27 16 29 H 0.44 0.41 9.10 -74.06 -0.67 -0.27 16 30 H 0.09 2.15 8.04 -2.39 -0.02 2.13 16 31 H 0.11 1.82 8.03 -2.38 -0.02 1.80 16 Total: -1.00 -76.84 293.50 3.33 -73.51 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: 0.46 Total: 1.22 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 4.02 Total: 2.78 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -2.40 Total: -72.71 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.38 Total: -38.54 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.76 Total: -2.92 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.90 Total: 46.45 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.05 Total: -9.78 kcal Total: -76.84 3.33 -73.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309341604.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.397 kcal (2) G-P(sol) polarization free energy of solvation -76.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds