Wall clock time and date at job start Mon Mar 30 2020 01:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 120.00249 * 2 1 4 4 H 1.48503 * 109.46889 * 270.00001 * 3 2 1 5 5 H 1.48494 * 109.47191 * 29.99950 * 3 2 1 6 6 H 1.48501 * 109.46989 * 150.00556 * 3 2 1 7 7 C 1.38803 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00074 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.47421 * 125.64841 * 359.68761 * 13 11 10 15 15 C 1.55130 * 104.72032 * 155.82113 * 14 13 11 16 16 C 1.55156 * 101.48672 * 37.29275 * 15 14 13 17 17 F 1.39906 * 110.87488 * 82.76976 * 16 15 14 18 18 C 1.50706 * 110.72169 * 205.96839 * 16 15 14 19 19 O 1.20832 * 119.99608 * 4.97966 * 18 16 15 20 20 O 1.34225 * 120.00070 * 184.97428 * 18 16 15 21 21 C 1.47020 * 125.64255 * 179.97438 * 13 11 10 22 22 H 0.97005 * 119.99717 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 24 24 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 25 25 H 1.09004 * 110.36474 * 274.74738 * 14 13 11 26 26 H 1.09000 * 110.36774 * 37.07050 * 14 13 11 27 27 H 1.08999 * 111.19301 * 279.18876 * 15 14 13 28 28 H 1.09002 * 110.93889 * 155.28641 * 15 14 13 29 29 H 0.96701 * 117.00164 * 180.02562 * 20 18 16 30 30 H 1.09004 * 109.88230 * 300.43313 * 21 13 11 31 31 H 1.09002 * 109.88308 * 61.60431 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7722 -1.2022 -0.0012 10 6 4.0865 -2.9847 -0.0009 11 6 5.5730 -3.2327 -0.0008 12 8 6.3439 -2.2965 -0.0014 13 7 6.0455 -4.4949 -0.0011 14 6 5.2248 -5.7196 0.0049 15 6 6.1394 -6.8100 -0.6124 16 6 7.5227 -6.4203 -0.0278 17 9 7.6798 -6.9322 1.2648 18 6 8.6348 -6.8967 -0.9265 19 8 8.3748 -7.4136 -1.9873 20 8 9.9140 -6.7466 -0.5486 21 6 7.4648 -4.8784 -0.0016 22 1 -0.4850 0.8401 0.0004 23 1 3.6439 -3.4315 0.8894 24 1 3.6432 -3.4319 -0.8906 25 1 4.9485 -5.9860 1.0251 26 1 4.3333 -5.5818 -0.6068 27 1 6.1443 -6.7503 -1.7008 28 1 5.8402 -7.8038 -0.2791 29 1 10.5924 -7.0673 -1.1585 30 1 7.9579 -4.4737 -0.8855 31 1 7.9501 -4.5046 0.9000 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309341607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:38 Heat of formation + Delta-G solvation = -163.556492 kcal Electronic energy + Delta-G solvation = -19098.470180 eV Core-core repulsion = 15614.076954 eV Total energy + Delta-G solvation = -3484.393226 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.062 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.46855 -40.90372 -39.70129 -37.26509 -36.61027 -32.47495 -32.06103 -30.16221 -28.99562 -25.69250 -24.94873 -23.53034 -21.00409 -19.77688 -18.86531 -18.10057 -17.84815 -17.04866 -16.59924 -15.98731 -15.59907 -15.36946 -15.04938 -14.86297 -14.56296 -14.00970 -13.88943 -13.40030 -13.14514 -12.88952 -12.72893 -12.26748 -12.16404 -12.09094 -12.04339 -11.51837 -11.30501 -11.08466 -11.03307 -10.66102 -9.90210 -9.69556 -9.03644 -8.86577 -8.55233 -6.97055 -6.32001 -4.04676 1.38964 2.05213 2.57364 2.78214 3.07344 3.31036 3.38786 3.48115 3.53142 3.59891 3.99873 4.30114 4.46924 4.50074 4.57281 4.79748 5.01929 5.07116 5.18290 5.24824 5.33836 5.37263 5.57276 5.69838 5.82499 5.92510 5.99682 7.18523 7.29819 7.90912 8.24031 8.38318 9.13984 10.77153 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.043592 B = 0.003746 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.162206 B = 7473.179854 C = 7748.392657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.140 6.140 10 C -0.118 4.118 11 C 0.551 3.449 12 O -0.511 6.511 13 N -0.626 5.626 14 C 0.098 3.902 15 C -0.139 4.139 16 C 0.121 3.879 17 F -0.170 7.170 18 C 0.480 3.520 19 O -0.487 6.487 20 O -0.500 6.500 21 C 0.100 3.900 22 H 0.271 0.729 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.417 0.583 30 H 0.089 0.911 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.740 -16.429 -0.599 22.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.086 5.914 10 C -0.268 4.268 11 C 0.340 3.660 12 O -0.384 6.384 13 N -0.364 5.364 14 C -0.025 4.025 15 C -0.177 4.177 16 C 0.101 3.899 17 F -0.150 7.150 18 C 0.319 3.681 19 O -0.374 6.374 20 O -0.312 6.312 21 C -0.023 4.023 22 H 0.081 0.919 23 H 0.118 0.882 24 H 0.117 0.883 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.277 0.723 30 H 0.107 0.893 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 16.305 -14.838 -0.589 22.054 hybrid contribution -0.275 -0.713 -0.297 0.820 sum 16.031 -15.551 -0.887 22.352 Atomic orbital electron populations 1.69934 1.05915 1.27824 1.47893 1.24702 0.94442 0.98958 0.93112 0.86744 0.81906 0.83297 0.79969 1.19172 1.19875 1.15915 1.22292 0.88075 0.97590 1.59013 0.89300 1.84823 1.09525 0.99619 1.97443 1.23267 0.92965 1.04621 1.05987 1.20080 0.90825 0.80091 0.75021 1.90729 1.58831 1.41009 1.47845 1.48425 1.05591 1.05968 1.76431 1.22499 0.95036 0.82770 1.02197 1.23485 0.89571 1.01024 1.03578 1.21622 0.93599 0.95831 0.78853 1.92998 1.96409 1.88037 1.37552 1.23146 0.83632 0.75613 0.85758 1.90785 1.84243 1.38998 1.23327 1.84573 1.16642 1.76873 1.53138 1.22262 0.85507 0.89333 1.05247 0.91884 0.88180 0.88254 0.89935 0.88446 0.86834 0.87334 0.72257 0.89266 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.22 13.97 55.49 0.78 -25.45 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.51 27.74 -169.99 -4.71 16.80 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 7 C -0.52 -14.78 10.04 30.94 0.31 -14.47 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 10 C -0.12 -2.22 5.16 36.01 0.19 -2.03 16 11 C 0.55 9.71 7.87 -10.98 -0.09 9.63 16 12 O -0.51 -10.88 16.19 5.56 0.09 -10.79 16 13 N -0.63 -8.20 3.32 -170.38 -0.57 -8.76 16 14 C 0.10 0.92 6.70 -2.41 -0.02 0.90 16 15 C -0.14 -1.10 6.05 -24.46 -0.15 -1.25 16 16 C 0.12 1.12 1.53 -89.93 -0.14 0.99 16 17 F -0.17 -1.71 16.96 2.25 0.04 -1.68 16 18 C 0.48 4.31 7.26 36.01 0.26 4.57 16 19 O -0.49 -5.32 16.43 -18.75 -0.31 -5.63 16 20 O -0.50 -3.40 13.42 -39.24 -0.53 -3.92 16 21 C 0.10 1.12 6.27 -3.06 -0.02 1.11 16 22 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 24 H 0.10 1.71 7.85 -51.92 -0.41 1.30 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.10 0.83 7.48 -51.93 -0.39 0.44 16 27 H 0.11 0.92 7.33 -51.93 -0.38 0.54 16 28 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.42 0.85 9.10 45.56 0.41 1.27 16 30 H 0.09 0.99 7.81 -51.93 -0.41 0.58 16 31 H 0.10 1.11 8.11 -51.93 -0.42 0.69 16 LS Contribution 292.35 15.07 4.41 4.41 Total: -1.00 -35.34 292.35 -4.98 -40.32 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -2.43 Total: -1.94 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 0.26 Total: 2.14 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.21 Total: -34.21 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.75 Total: -20.34 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.80 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -35.34 -4.98 -40.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309341607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.233 kcal (2) G-P(sol) polarization free energy of solvation -35.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds