Wall clock time and date at job start Mon Mar 30 2020 01:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 120.00249 * 2 1 4 4 H 1.48503 * 109.46889 * 270.00001 * 3 2 1 5 5 H 1.48494 * 109.47191 * 29.99950 * 3 2 1 6 6 H 1.48501 * 109.46989 * 150.00556 * 3 2 1 7 7 C 1.38803 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00074 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.47421 * 125.64841 * 359.68761 * 13 11 10 15 15 C 1.55130 * 104.72032 * 155.82113 * 14 13 11 16 16 C 1.55156 * 101.48672 * 37.29275 * 15 14 13 17 17 F 1.39906 * 110.87488 * 82.76976 * 16 15 14 18 18 C 1.50706 * 110.72169 * 205.96839 * 16 15 14 19 19 O 1.20832 * 119.99608 * 4.97966 * 18 16 15 20 20 O 1.34225 * 120.00070 * 184.97428 * 18 16 15 21 21 C 1.47020 * 125.64255 * 179.97438 * 13 11 10 22 22 H 0.97005 * 119.99717 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 24 24 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 25 25 H 1.09004 * 110.36474 * 274.74738 * 14 13 11 26 26 H 1.09000 * 110.36774 * 37.07050 * 14 13 11 27 27 H 1.08999 * 111.19301 * 279.18876 * 15 14 13 28 28 H 1.09002 * 110.93889 * 155.28641 * 15 14 13 29 29 H 0.96701 * 117.00164 * 180.02562 * 20 18 16 30 30 H 1.09004 * 109.88230 * 300.43313 * 21 13 11 31 31 H 1.09002 * 109.88308 * 61.60431 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7722 -1.2022 -0.0012 10 6 4.0865 -2.9847 -0.0009 11 6 5.5730 -3.2327 -0.0008 12 8 6.3439 -2.2965 -0.0014 13 7 6.0455 -4.4949 -0.0011 14 6 5.2248 -5.7196 0.0049 15 6 6.1394 -6.8100 -0.6124 16 6 7.5227 -6.4203 -0.0278 17 9 7.6798 -6.9322 1.2648 18 6 8.6348 -6.8967 -0.9265 19 8 8.3748 -7.4136 -1.9873 20 8 9.9140 -6.7466 -0.5486 21 6 7.4648 -4.8784 -0.0016 22 1 -0.4850 0.8401 0.0004 23 1 3.6439 -3.4315 0.8894 24 1 3.6432 -3.4319 -0.8906 25 1 4.9485 -5.9860 1.0251 26 1 4.3333 -5.5818 -0.6068 27 1 6.1443 -6.7503 -1.7008 28 1 5.8402 -7.8038 -0.2791 29 1 10.5924 -7.0673 -1.1585 30 1 7.9579 -4.4737 -0.8855 31 1 7.9501 -4.5046 0.9000 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309341607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:38 Heat of formation + Delta-G solvation = -189.553202 kcal Electronic energy + Delta-G solvation = -19099.597482 eV Core-core repulsion = 15614.076954 eV Total energy + Delta-G solvation = -3485.520528 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.062 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.23172 -41.65278 -40.84352 -38.29545 -37.33891 -34.66901 -33.15273 -31.14902 -30.15100 -27.86385 -25.91806 -24.32685 -21.72795 -21.03651 -19.71665 -19.53255 -18.80970 -18.26756 -17.62298 -17.12012 -17.03153 -16.54500 -16.30419 -15.87361 -15.64560 -15.49482 -14.93355 -14.90057 -14.40188 -13.93921 -13.83941 -13.51004 -13.33022 -13.01895 -12.97292 -12.80862 -12.76074 -12.68245 -12.27462 -11.88825 -11.78620 -11.16652 -11.14297 -10.54242 -9.95628 -9.00945 -8.51072 -6.22420 0.67686 0.92359 1.32021 1.33022 1.41656 1.49389 1.59540 1.96691 2.25300 2.59433 2.69387 2.85501 2.87502 3.25669 3.59618 3.76136 3.87451 4.06553 4.17433 4.34054 4.39333 4.52206 4.58532 4.70345 4.91805 5.01953 5.28949 5.71420 6.11317 6.12802 6.68135 6.90890 6.94404 8.61193 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.043592 B = 0.003746 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.162206 B = 7473.179854 C = 7748.392657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.065 0.935 9 S -0.176 6.176 10 C -0.103 4.103 11 C 0.554 3.446 12 O -0.557 6.557 13 N -0.617 5.617 14 C 0.088 3.912 15 C -0.129 4.129 16 C 0.126 3.874 17 F -0.173 7.173 18 C 0.487 3.513 19 O -0.508 6.508 20 O -0.498 6.498 21 C 0.096 3.904 22 H 0.277 0.723 23 H 0.117 0.883 24 H 0.118 0.882 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.134 0.866 29 H 0.438 0.562 30 H 0.090 0.910 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.904 -17.724 -0.614 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.675 4.675 8 H 0.083 0.917 9 S 0.051 5.949 10 C -0.254 4.254 11 C 0.342 3.658 12 O -0.434 6.434 13 N -0.353 5.353 14 C -0.033 4.033 15 C -0.167 4.167 16 C 0.105 3.895 17 F -0.153 7.153 18 C 0.327 3.673 19 O -0.396 6.396 20 O -0.313 6.313 21 C -0.028 4.028 22 H 0.086 0.914 23 H 0.135 0.865 24 H 0.136 0.864 25 H 0.116 0.884 26 H 0.127 0.873 27 H 0.132 0.868 28 H 0.152 0.848 29 H 0.302 0.698 30 H 0.108 0.892 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.491 -16.195 -0.603 23.845 hybrid contribution -0.552 -0.509 -0.280 0.802 sum 16.938 -16.704 -0.883 23.806 Atomic orbital electron populations 1.70010 1.07277 1.29024 1.49099 1.25527 0.95227 1.02165 0.92889 0.85900 0.80716 0.79760 0.80212 1.18711 1.18381 1.16072 1.22437 0.90006 0.96789 1.58288 0.91657 1.84759 1.06729 1.05824 1.97601 1.23219 0.94622 0.99800 1.07718 1.19713 0.89805 0.81121 0.75157 1.90710 1.59422 1.42813 1.50478 1.48301 1.07262 1.05614 1.74151 1.22852 0.95329 0.81424 1.03690 1.23508 0.88101 1.01641 1.03466 1.21562 0.94791 0.94250 0.78874 1.92996 1.96515 1.87915 1.37901 1.22949 0.84142 0.75106 0.85124 1.90788 1.84645 1.40120 1.24035 1.84532 1.16415 1.76529 1.53812 1.22366 0.84134 0.91035 1.05219 0.91353 0.86527 0.86413 0.88369 0.87284 0.86775 0.84801 0.69810 0.89169 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.09 13.97 21.65 0.30 -54.79 16 2 C 0.05 2.75 5.50 84.86 0.47 3.21 16 3 Si 0.91 44.42 27.74 68.60 1.90 46.32 16 4 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.24 -11.52 6.74 99.48 0.67 -10.84 16 7 C -0.53 -30.10 10.04 67.96 0.68 -29.42 16 8 H 0.07 3.90 8.03 -2.91 -0.02 3.88 16 9 S -0.18 -8.71 18.55 -56.49 -1.05 -9.76 16 10 C -0.10 -3.75 5.16 71.24 0.37 -3.38 16 11 C 0.55 18.88 7.87 87.66 0.69 19.57 16 12 O -0.56 -23.58 16.19 -3.04 -0.05 -23.63 16 13 N -0.62 -15.01 3.32 -811.34 -2.70 -17.71 16 14 C 0.09 1.40 6.70 86.93 0.58 1.98 16 15 C -0.13 -1.66 6.05 32.06 0.19 -1.46 16 16 C 0.13 2.03 1.53 -10.35 -0.02 2.01 16 17 F -0.17 -3.06 16.96 44.97 0.76 -2.30 16 18 C 0.49 7.65 7.26 71.24 0.52 8.17 16 19 O -0.51 -9.98 16.43 21.94 0.36 -9.62 16 20 O -0.50 -5.60 13.42 -51.37 -0.69 -6.29 16 21 C 0.10 1.99 6.27 86.73 0.54 2.53 16 22 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 23 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 24 H 0.12 3.86 7.85 -2.40 -0.02 3.84 16 25 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.11 1.52 7.48 -2.39 -0.02 1.50 16 27 H 0.11 1.53 7.33 -2.39 -0.02 1.51 16 28 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.44 0.70 9.10 -74.06 -0.67 0.03 16 30 H 0.09 1.88 7.81 -2.38 -0.02 1.86 16 31 H 0.09 2.04 8.11 -2.39 -0.02 2.02 16 Total: -1.00 -76.15 292.35 3.34 -72.82 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 0.47 Total: 1.74 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 4.03 Total: 3.22 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -2.40 Total: -72.50 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.38 Total: -39.54 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.76 Total: -2.30 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.32 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.05 Total: -9.76 kcal Total: -76.15 3.34 -72.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309341607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.736 kcal (2) G-P(sol) polarization free energy of solvation -76.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds