Wall clock time and date at job start Mon Mar 30 2020 01:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48497 * 109.47141 * 269.99831 * 3 2 1 5 5 H 1.48505 * 109.47177 * 29.99625 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99598 * 3 2 1 7 7 C 1.38799 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99356 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 O 1.42903 * 109.60217 * 300.70109 * 15 14 13 17 17 C 1.52946 * 109.60632 * 180.37742 * 15 14 13 18 18 C 1.53706 * 112.49210 * 209.96694 * 17 15 14 19 19 S 1.83391 * 104.96695 * 2.82627 * 18 17 15 20 20 C 1.55155 * 109.60292 * 61.02332 * 15 14 13 21 21 H 0.97003 * 119.99714 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 23 23 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 24 24 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 25 25 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 26 26 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 27 27 H 0.96698 * 114.00168 * 59.29474 * 16 15 14 28 28 H 1.08998 * 108.88402 * 330.76566 * 17 15 14 29 29 H 1.09000 * 108.88487 * 89.31613 * 17 15 14 30 30 H 1.09006 * 110.34018 * 121.69486 * 18 17 15 31 31 H 1.08997 * 110.34297 * 243.84545 * 18 17 15 32 32 H 1.09000 * 111.13307 * 279.27797 * 20 15 14 33 33 H 1.08992 * 111.13004 * 43.46080 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6528 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5731 -3.2325 0.0026 12 8 6.3440 -2.2963 0.0014 13 7 6.0456 -4.4947 -0.0021 14 6 7.4906 -4.7357 -0.0081 15 6 7.7563 -6.2425 -0.0120 16 8 7.1671 -6.8362 1.1467 17 6 9.2643 -6.4977 -0.0087 18 6 9.6407 -7.8067 -0.7211 19 16 8.0552 -8.4712 -1.3597 20 6 7.1445 -6.8756 -1.2895 21 1 -0.4850 0.8401 -0.0004 22 1 3.6439 -3.4322 -0.8874 23 1 3.6433 -3.4309 0.8926 24 1 5.4290 -5.2435 -0.0014 25 1 7.9302 -4.2867 -0.8986 26 1 7.9370 -4.2908 0.8813 27 1 6.2109 -6.7075 1.2115 28 1 9.7637 -5.6677 -0.5085 29 1 9.6115 -6.5476 1.0233 30 1 10.3266 -7.6064 -1.5443 31 1 10.0899 -8.5061 -0.0161 32 1 6.0737 -7.0418 -1.1716 33 1 7.3511 -6.2649 -2.1683 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331043495.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:11 Heat of formation + Delta-G solvation = -90.051561 kcal Electronic energy + Delta-G solvation = -16966.221743 eV Core-core repulsion = 14051.229106 eV Total energy + Delta-G solvation = -2914.992637 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04090 -38.51025 -34.34836 -34.03143 -32.48412 -30.50190 -29.21996 -27.08219 -25.65779 -23.98433 -20.79361 -20.65620 -18.34450 -17.39482 -17.06568 -16.36515 -16.21217 -15.62653 -15.19088 -15.00938 -14.75546 -14.46966 -13.90901 -13.61340 -13.40713 -12.91383 -12.84081 -12.60237 -12.41671 -12.17891 -11.89073 -11.49882 -11.31113 -11.04804 -10.87815 -10.67187 -10.17596 -9.90640 -9.68661 -9.22970 -9.04319 -8.56771 -8.02015 -6.97991 -6.33261 -4.05907 1.42029 1.88927 2.63276 2.82096 3.16495 3.29681 3.46564 3.54617 3.61841 3.89061 4.05670 4.28628 4.30121 4.52054 4.59438 4.70097 4.89320 5.05813 5.09019 5.13168 5.24424 5.27347 5.38647 5.42091 5.57796 5.66744 5.91414 6.24789 7.10535 7.34893 7.89653 8.30978 8.37030 9.12714 10.75944 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.047961 B = 0.003318 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.664019 B = 8436.357597 C = 8724.906220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.125 4.125 11 C 0.533 3.467 12 O -0.514 6.514 13 N -0.739 5.739 14 C 0.102 3.898 15 C 0.124 3.876 16 O -0.538 6.538 17 C -0.117 4.117 18 C -0.068 4.068 19 S -0.277 6.277 20 C -0.101 4.101 21 H 0.271 0.729 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.395 0.605 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.378 0.622 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.177 -15.610 -1.061 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.107 0.893 9 S 0.086 5.914 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.388 6.388 13 N -0.395 5.395 14 C -0.024 4.024 15 C 0.081 3.919 16 O -0.344 6.344 17 C -0.156 4.156 18 C -0.216 4.216 19 S -0.050 6.050 20 C -0.249 4.249 21 H 0.081 0.919 22 H 0.116 0.884 23 H 0.117 0.883 24 H 0.230 0.770 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.227 0.773 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 18.600 -15.251 -1.306 24.088 hybrid contribution -1.420 0.572 0.146 1.538 sum 17.180 -14.679 -1.160 22.627 Atomic orbital electron populations 1.69936 1.05927 1.27835 1.47890 1.24714 0.94453 0.98984 0.93126 0.86737 0.81886 0.83283 0.79954 1.19183 1.19880 1.15929 1.22304 0.88178 0.97571 1.59002 0.89348 1.84811 1.09415 0.99738 1.97439 1.23286 0.93657 1.04718 1.05925 1.20303 0.90718 0.81995 0.75026 1.90717 1.58793 1.42048 1.47250 1.45912 1.06880 1.08297 1.78422 1.21970 0.82527 0.94028 1.03891 1.22253 0.93538 0.91044 0.85084 1.86659 1.26475 1.78597 1.42664 1.21868 0.92451 0.97480 1.03812 1.23905 0.96612 0.98654 1.02462 1.87899 1.12721 1.17497 1.86921 1.25171 1.03118 0.95407 1.01220 0.91877 0.88392 0.88305 0.77027 0.90242 0.90043 0.77349 0.88985 0.88522 0.88850 0.88032 0.87174 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.23 13.97 55.49 0.78 -25.45 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.44 27.74 -169.99 -4.72 16.73 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 7 C -0.52 -14.77 10.04 30.94 0.31 -14.45 16 8 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 9 S -0.14 -3.45 18.55 -107.50 -1.99 -5.44 16 10 C -0.13 -2.26 6.16 36.01 0.22 -2.04 16 11 C 0.53 8.64 7.85 -10.98 -0.09 8.56 16 12 O -0.51 -10.44 15.86 5.55 0.09 -10.35 16 13 N -0.74 -7.87 5.09 -60.30 -0.31 -8.17 16 14 C 0.10 0.96 4.62 -4.04 -0.02 0.94 16 15 C 0.12 0.94 0.79 -89.51 -0.07 0.87 16 16 O -0.54 -4.56 12.83 -35.23 -0.45 -5.01 16 17 C -0.12 -0.78 5.57 -26.39 -0.15 -0.92 16 18 C -0.07 -0.46 7.38 37.52 0.28 -0.18 16 19 S -0.28 -2.56 23.12 -107.50 -2.49 -5.04 16 20 C -0.10 -0.75 6.01 38.30 0.23 -0.52 16 21 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 22 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 23 H 0.10 1.65 8.14 -51.92 -0.42 1.22 16 24 H 0.40 3.00 6.83 -40.82 -0.28 2.72 16 25 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.38 2.27 7.82 45.56 0.36 2.63 16 28 H 0.09 0.49 7.78 -51.93 -0.40 0.08 16 29 H 0.10 0.65 8.06 -51.93 -0.42 0.23 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.11 0.72 7.72 -51.93 -0.40 0.32 16 33 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 303.49 15.07 4.57 4.57 Total: -1.00 -34.40 303.49 -7.57 -41.97 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.68 Total: 1.28 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 0.62 Total: -5.08 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.47 Total: -33.63 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.36 Total: -15.36 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.72 Total: 16.73 kcal Atomic # 16 Polarization: -6.01 SS G_CDS: -4.48 Total: -10.49 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.40 -7.57 -41.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331043495.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.077 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds