Wall clock time and date at job start Mon Mar 30 2020 01:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99935 * 2 1 4 4 H 1.48498 * 109.46603 * 269.72231 * 3 2 1 5 5 H 1.48496 * 109.47225 * 29.72147 * 3 2 1 6 6 H 1.48494 * 109.47296 * 149.72158 * 3 2 1 7 7 C 1.38805 * 120.00253 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99635 * 180.02562 * 7 2 1 9 9 S 1.76192 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00053 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00404 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99843 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00299 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47401 * 180.02562 * 14 13 11 16 16 O 1.42894 * 108.83184 * 66.46740 * 15 14 13 17 17 C 1.52338 * 108.86943 * 184.99880 * 15 14 13 18 18 C 1.54262 * 112.58662 * 120.81718 * 17 15 14 19 19 S 1.83958 * 102.58126 * 24.52906 * 18 17 15 20 20 C 1.54261 * 108.86617 * 308.07080 * 15 14 13 21 21 H 0.97000 * 120.00481 * 0.27720 * 1 2 3 22 22 H 1.08998 * 109.46924 * 299.99540 * 10 9 7 23 23 H 1.08996 * 109.46816 * 60.00287 * 10 9 7 24 24 H 0.97004 * 119.99890 * 359.97438 * 13 11 10 25 25 H 1.09003 * 109.46943 * 299.99945 * 14 13 11 26 26 H 1.09003 * 109.47001 * 59.99659 * 14 13 11 27 27 H 0.96706 * 113.99869 * 300.70282 * 16 15 14 28 28 H 1.08999 * 108.86636 * 241.63593 * 17 15 14 29 29 H 1.09008 * 108.86581 * 0.14616 * 17 15 14 30 30 H 1.08997 * 110.78778 * 142.80341 * 18 17 15 31 31 H 1.08998 * 110.78633 * 266.06478 * 18 17 15 32 32 H 1.09000 * 110.78858 * 332.92851 * 20 15 14 33 33 H 1.09000 * 110.78262 * 96.38018 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5036 2.0430 -1.4001 5 1 1.4448 2.6544 0.6941 6 1 3.5448 1.4420 0.7059 7 6 2.0103 -1.2020 0.0059 8 1 3.0903 -1.2019 0.0063 9 16 1.1294 -2.7279 0.0128 10 6 2.5160 -3.8913 0.0180 11 6 1.9875 -5.3026 0.0250 12 8 0.7912 -5.5022 0.0258 13 7 2.8443 -6.3430 0.0292 14 6 2.3306 -7.7149 0.0354 15 6 3.5027 -8.6984 0.0400 16 8 4.2031 -8.5756 1.2794 17 6 2.9571 -10.1157 -0.0792 18 6 3.4935 -10.8544 -1.3227 19 16 5.0779 -9.9809 -1.6553 20 6 4.4635 -8.3347 -1.1108 21 1 -0.4851 0.8400 -0.0041 22 1 3.1245 -3.7353 -0.8727 23 1 3.1245 -3.7272 0.9073 24 1 3.8011 -6.1834 0.0274 25 1 1.7223 -7.8711 0.9264 26 1 1.7216 -7.8789 -0.8536 27 1 4.5538 -7.6901 1.4469 28 1 3.2366 -10.6771 0.8122 29 1 1.8696 -10.0708 -0.1403 30 1 3.6711 -11.9067 -1.1008 31 1 2.8062 -10.7484 -2.1620 32 1 3.9283 -7.8350 -1.9183 33 1 5.2844 -7.7160 -0.7484 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331043496.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:13 Heat of formation + Delta-G solvation = -90.619399 kcal Electronic energy + Delta-G solvation = -16952.521014 eV Core-core repulsion = 14037.503754 eV Total energy + Delta-G solvation = -2915.017260 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.059 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.02175 -38.43562 -34.35520 -33.91248 -32.47216 -30.32983 -29.11229 -27.07483 -25.52916 -24.07572 -20.62416 -20.47567 -18.26105 -17.37848 -17.07129 -16.32859 -16.19135 -15.63681 -15.10910 -14.84174 -14.58654 -14.38615 -13.99587 -13.43079 -13.27569 -12.88197 -12.63055 -12.60034 -12.40270 -12.19671 -11.80593 -11.41152 -11.09950 -11.06771 -10.87133 -10.78387 -10.13449 -9.86376 -9.55277 -9.14888 -9.08466 -8.30108 -8.05389 -6.55805 -6.25974 -3.97307 1.42953 1.85774 2.88939 2.95556 3.19666 3.24147 3.28036 3.57473 3.60605 3.93250 4.12448 4.16232 4.39223 4.57368 4.67708 4.87810 5.02506 5.09436 5.11961 5.25472 5.32586 5.41449 5.48068 5.53545 5.69293 5.79586 6.04692 6.36059 7.14624 7.46306 7.55438 8.30697 8.44730 9.19437 10.81429 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.041579 B = 0.003253 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.251654 B = 8605.211449 C = 8906.113490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.512 6.512 13 N -0.743 5.743 14 C 0.096 3.904 15 C 0.128 3.872 16 O -0.545 6.545 17 C -0.118 4.118 18 C -0.066 4.066 19 S -0.283 6.283 20 C -0.100 4.100 21 H 0.269 0.731 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.395 0.605 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.379 0.621 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.395 -19.298 -1.152 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.386 6.386 13 N -0.399 5.399 14 C -0.030 4.030 15 C 0.085 3.915 16 O -0.352 6.352 17 C -0.157 4.157 18 C -0.214 4.214 19 S -0.056 6.056 20 C -0.249 4.249 21 H 0.079 0.921 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.229 0.771 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.227 0.773 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.142 -20.552 -1.535 22.159 hybrid contribution 1.538 2.385 0.297 2.853 sum 9.680 -18.167 -1.238 20.622 Atomic orbital electron populations 1.70009 1.05972 1.27542 1.46713 1.24997 0.95033 0.99067 0.94453 0.86159 0.79411 0.81499 0.78382 1.20244 1.20722 1.19667 1.22860 0.94907 0.91599 1.59165 0.90890 1.85419 1.04732 0.96370 1.96732 1.23537 1.06759 0.95186 1.05008 1.20345 0.86480 0.86225 0.74955 1.90718 1.15317 1.85528 1.47008 1.46026 1.09800 1.05377 1.78679 1.22196 0.95843 0.81063 1.03852 1.21981 0.89970 0.95373 0.84161 1.86656 1.74505 1.36498 1.37497 1.21893 1.01775 0.92656 0.99344 1.24172 0.95091 1.02273 0.99898 1.88079 1.21665 1.08228 1.87638 1.25039 1.01719 0.97039 1.01094 0.92124 0.89135 0.89102 0.77130 0.90025 0.90368 0.77289 0.88408 0.88959 0.87232 0.88738 0.87777 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.83 13.22 55.49 0.73 -25.09 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -15.01 9.50 30.94 0.29 -14.72 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -2.94 6.16 36.01 0.22 -2.71 16 11 C 0.53 9.22 7.85 -10.98 -0.09 9.14 16 12 O -0.51 -11.08 15.86 5.55 0.09 -10.99 16 13 N -0.74 -8.50 4.99 -60.29 -0.30 -8.80 16 14 C 0.10 0.98 4.27 -4.04 -0.02 0.96 16 15 C 0.13 1.04 0.99 -90.30 -0.09 0.95 16 16 O -0.55 -4.79 12.68 -35.23 -0.45 -5.24 16 17 C -0.12 -0.85 5.81 -26.41 -0.15 -1.00 16 18 C -0.07 -0.45 7.46 37.82 0.28 -0.17 16 19 S -0.28 -2.67 23.27 -107.50 -2.50 -5.17 16 20 C -0.10 -0.80 5.48 37.82 0.21 -0.59 16 21 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 23 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 24 H 0.39 3.27 7.01 -40.82 -0.29 2.98 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 27 H 0.38 2.36 8.11 45.56 0.37 2.72 16 28 H 0.10 0.74 7.83 -51.93 -0.41 0.34 16 29 H 0.09 0.57 7.51 -51.92 -0.39 0.18 16 30 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.84 7.84 -51.93 -0.41 0.44 16 33 H 0.11 0.75 7.79 -51.93 -0.40 0.35 16 LS Contribution 305.53 15.07 4.60 4.60 Total: -1.00 -34.71 305.53 -8.10 -42.81 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.61 Total: 1.73 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 0.56 Total: -6.15 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.43 Total: -33.89 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.36 Total: -16.22 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -4.23 SS G_CDS: -4.71 Total: -8.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.71 -8.10 -42.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331043496.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.805 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds