Wall clock time and date at job start Mon Mar 30 2020 01:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99935 * 2 1 4 4 H 1.48498 * 109.46603 * 269.72231 * 3 2 1 5 5 H 1.48496 * 109.47225 * 29.72147 * 3 2 1 6 6 H 1.48494 * 109.47296 * 149.72158 * 3 2 1 7 7 C 1.38805 * 120.00253 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99635 * 180.02562 * 7 2 1 9 9 S 1.76192 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00053 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00404 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99843 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00299 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47401 * 180.02562 * 14 13 11 16 16 O 1.42894 * 108.83184 * 66.46740 * 15 14 13 17 17 C 1.52338 * 108.86943 * 184.99880 * 15 14 13 18 18 C 1.54262 * 112.58662 * 120.81718 * 17 15 14 19 19 S 1.83958 * 102.58126 * 24.52906 * 18 17 15 20 20 C 1.54261 * 108.86617 * 308.07080 * 15 14 13 21 21 H 0.97000 * 120.00481 * 0.27720 * 1 2 3 22 22 H 1.08998 * 109.46924 * 299.99540 * 10 9 7 23 23 H 1.08996 * 109.46816 * 60.00287 * 10 9 7 24 24 H 0.97004 * 119.99890 * 359.97438 * 13 11 10 25 25 H 1.09003 * 109.46943 * 299.99945 * 14 13 11 26 26 H 1.09003 * 109.47001 * 59.99659 * 14 13 11 27 27 H 0.96706 * 113.99869 * 300.70282 * 16 15 14 28 28 H 1.08999 * 108.86636 * 241.63593 * 17 15 14 29 29 H 1.09008 * 108.86581 * 0.14616 * 17 15 14 30 30 H 1.08997 * 110.78778 * 142.80341 * 18 17 15 31 31 H 1.08998 * 110.78633 * 266.06478 * 18 17 15 32 32 H 1.09000 * 110.78858 * 332.92851 * 20 15 14 33 33 H 1.09000 * 110.78262 * 96.38018 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5036 2.0430 -1.4001 5 1 1.4448 2.6544 0.6941 6 1 3.5448 1.4420 0.7059 7 6 2.0103 -1.2020 0.0059 8 1 3.0903 -1.2019 0.0063 9 16 1.1294 -2.7279 0.0128 10 6 2.5160 -3.8913 0.0180 11 6 1.9875 -5.3026 0.0250 12 8 0.7912 -5.5022 0.0258 13 7 2.8443 -6.3430 0.0292 14 6 2.3306 -7.7149 0.0354 15 6 3.5027 -8.6984 0.0400 16 8 4.2031 -8.5756 1.2794 17 6 2.9571 -10.1157 -0.0792 18 6 3.4935 -10.8544 -1.3227 19 16 5.0779 -9.9809 -1.6553 20 6 4.4635 -8.3347 -1.1108 21 1 -0.4851 0.8400 -0.0041 22 1 3.1245 -3.7353 -0.8727 23 1 3.1245 -3.7272 0.9073 24 1 3.8011 -6.1834 0.0274 25 1 1.7223 -7.8711 0.9264 26 1 1.7216 -7.8789 -0.8536 27 1 4.5538 -7.6901 1.4469 28 1 3.2366 -10.6771 0.8122 29 1 1.8696 -10.0708 -0.1403 30 1 3.6711 -11.9067 -1.1008 31 1 2.8062 -10.7484 -2.1620 32 1 3.9283 -7.8350 -1.9183 33 1 5.2844 -7.7160 -0.7484 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331043496.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:12 Heat of formation + Delta-G solvation = -117.444821 kcal Electronic energy + Delta-G solvation = -16953.684252 eV Core-core repulsion = 14037.503754 eV Total energy + Delta-G solvation = -2916.180498 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.059 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06776 -39.49332 -35.38097 -34.67132 -34.58018 -31.51620 -30.02764 -28.03116 -27.56072 -24.83953 -21.85473 -21.18586 -19.95527 -18.56209 -17.90745 -17.40509 -17.20602 -16.87658 -16.71603 -16.13063 -15.75644 -15.43681 -15.09587 -14.61662 -14.46231 -14.34015 -13.57257 -13.42824 -13.22535 -13.16758 -12.98233 -12.89154 -12.71197 -12.61752 -12.05433 -11.73463 -11.51798 -11.14203 -11.01347 -10.80268 -10.27518 -10.25356 -8.76875 -8.66602 -8.34761 -6.12651 0.80057 1.23412 1.27740 1.42845 1.47106 1.57025 1.57539 2.18270 2.27779 2.99726 3.00393 3.28068 3.31541 3.39695 3.75780 3.93072 4.01838 4.11709 4.26088 4.31133 4.51331 4.51944 4.57253 4.64588 4.74143 4.90134 4.97635 5.29020 5.42267 6.19816 6.36973 6.60429 7.06963 7.16950 8.74332 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.041579 B = 0.003253 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.251654 B = 8605.211449 C = 8906.113490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.152 6.152 10 C -0.131 4.131 11 C 0.537 3.463 12 O -0.562 6.562 13 N -0.713 5.713 14 C 0.099 3.901 15 C 0.140 3.860 16 O -0.556 6.556 17 C -0.120 4.120 18 C -0.053 4.053 19 S -0.335 6.335 20 C -0.092 4.092 21 H 0.271 0.729 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.414 0.586 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.389 0.611 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.422 -19.672 -1.150 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.282 4.282 11 C 0.323 3.677 12 O -0.440 6.440 13 N -0.369 5.369 14 C -0.026 4.026 15 C 0.097 3.903 16 O -0.364 6.364 17 C -0.159 4.159 18 C -0.201 4.201 19 S -0.109 6.109 20 C -0.240 4.240 21 H 0.080 0.920 22 H 0.130 0.870 23 H 0.131 0.869 24 H 0.252 0.748 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.239 0.761 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.141 0.859 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.234 -20.960 -1.532 23.375 hybrid contribution 0.951 2.350 0.305 2.554 sum 11.185 -18.610 -1.227 21.747 Atomic orbital electron populations 1.70175 1.07977 1.28610 1.48019 1.26116 0.95939 1.03312 0.93759 0.84964 0.78228 0.76082 0.78778 1.19347 1.20450 1.18130 1.23212 0.95387 0.92003 1.58826 0.89797 1.85596 1.10568 0.99284 1.97064 1.23382 1.03612 0.94175 1.07040 1.20042 0.86159 0.86594 0.74878 1.90711 1.17443 1.86043 1.49756 1.45676 1.10194 1.04818 1.76195 1.22296 0.96764 0.80203 1.03370 1.21901 0.88984 0.95189 0.84193 1.86660 1.74472 1.37578 1.37651 1.21932 1.02500 0.91987 0.99469 1.24261 0.93253 1.02575 1.00004 1.88281 1.24346 1.10194 1.88030 1.25050 1.01949 0.96220 1.00818 0.92010 0.86978 0.86938 0.74835 0.91033 0.90442 0.76051 0.88599 0.87798 0.85884 0.87592 0.87736 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 2 C 0.01 0.76 5.49 84.86 0.47 1.22 16 3 Si 1.00 42.81 29.55 68.60 2.03 44.84 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.55 -30.46 9.50 67.96 0.65 -29.81 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 10 C -0.13 -4.79 6.16 71.24 0.44 -4.36 16 11 C 0.54 17.94 7.85 87.66 0.69 18.62 16 12 O -0.56 -24.44 15.86 -3.04 -0.05 -24.49 16 13 N -0.71 -14.68 4.99 -463.06 -2.31 -16.99 16 14 C 0.10 1.83 4.27 86.38 0.37 2.20 16 15 C 0.14 1.96 0.99 -10.59 -0.01 1.95 16 16 O -0.56 -8.39 12.68 -148.98 -1.89 -10.28 16 17 C -0.12 -1.46 5.81 30.80 0.18 -1.28 16 18 C -0.05 -0.61 7.46 72.41 0.54 -0.07 16 19 S -0.34 -5.78 23.27 -56.49 -1.31 -7.10 16 20 C -0.09 -1.24 5.48 72.41 0.40 -0.85 16 21 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 22 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 23 H 0.11 3.64 8.14 -2.40 -0.02 3.63 16 24 H 0.41 5.48 7.01 -92.71 -0.65 4.83 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.52 8.13 -2.39 -0.02 1.50 16 27 H 0.39 3.72 8.11 -74.05 -0.60 3.12 16 28 H 0.10 1.25 7.83 -2.39 -0.02 1.24 16 29 H 0.10 1.04 7.51 -2.38 -0.02 1.02 16 30 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.43 7.84 -2.39 -0.02 1.41 16 33 H 0.13 1.32 7.79 -2.39 -0.02 1.30 16 Total: -1.00 -76.94 305.53 -0.81 -77.76 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -0.11 Total: 12.99 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 3.71 Total: -12.36 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -2.02 Total: -71.99 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -1.94 Total: -34.77 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: -13.98 SS G_CDS: -2.48 Total: -16.46 kcal Total: -76.94 -0.81 -77.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331043496.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.690 kcal (2) G-P(sol) polarization free energy of solvation -76.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds