Wall clock time and date at job start Mon Mar 30 2020 01:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00330 * 2 1 4 4 H 1.48500 * 109.46935 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46978 * 300.00137 * 3 2 1 6 6 H 1.48499 * 109.46900 * 60.00120 * 3 2 1 7 7 C 1.37884 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00036 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47312 * 179.97438 * 9 7 2 11 11 S 1.65602 * 120.00218 * 164.99656 * 10 9 7 12 12 O 1.42092 * 106.40139 * 311.46212 * 11 10 9 13 13 O 1.42101 * 106.40303 * 178.53919 * 11 10 9 14 14 C 1.76201 * 107.21471 * 65.00167 * 11 10 9 15 15 C 1.38257 * 119.99816 * 115.25265 * 14 11 10 16 16 C 1.38213 * 120.06756 * 180.25122 * 15 14 11 17 17 C 1.38253 * 120.07443 * 359.75015 * 16 15 14 18 18 C 1.38368 * 120.00006 * 359.97438 * 17 16 15 19 19 F 1.35102 * 120.04054 * 179.97438 * 18 17 16 20 20 C 1.38372 * 120.00267 * 294.99985 * 14 11 10 21 21 F 1.35104 * 120.03221 * 0.02562 * 20 14 11 22 22 H 0.97003 * 119.99390 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47321 * 59.99658 * 9 7 2 24 24 H 1.09002 * 109.47186 * 299.99438 * 9 7 2 25 25 H 0.97006 * 119.99840 * 344.99957 * 10 9 7 26 26 H 1.07999 * 119.96593 * 359.97438 * 15 14 11 27 27 H 1.08003 * 119.96832 * 179.72392 * 16 15 14 28 28 H 1.08001 * 120.00866 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6128 -0.0027 11 16 1.6879 -5.1426 0.3672 12 8 0.9250 -5.0316 1.5608 13 8 2.8234 -5.9884 0.2464 14 6 0.5643 -5.6347 -0.8977 15 6 0.8807 -6.6921 -1.7303 16 6 0.0026 -7.0760 -2.7263 17 6 -1.1962 -6.4069 -2.8888 18 6 -1.5184 -5.3518 -2.0535 19 9 -2.6894 -4.6970 -2.2119 20 6 -0.6371 -4.9663 -1.0543 21 9 -0.9490 -3.9358 -0.2381 22 1 -0.4849 0.8401 0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6240 -2.5575 0.8881 25 1 3.1348 -3.4540 -0.2200 26 1 1.8169 -7.2158 -1.6052 27 1 0.2534 -7.8994 -3.3786 28 1 -1.8817 -6.7080 -3.6671 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335388806.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:00 Heat of formation + Delta-G solvation = -134.267845 kcal Electronic energy + Delta-G solvation = -19703.671390 eV Core-core repulsion = 16097.087910 eV Total energy + Delta-G solvation = -3606.583480 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.46486 -48.53557 -38.91870 -36.80914 -35.47017 -34.68418 -32.18130 -31.37775 -30.47605 -26.77318 -23.94078 -22.98624 -22.54185 -19.38062 -18.36744 -17.78373 -17.23330 -17.05014 -16.37471 -15.99251 -15.78263 -15.40956 -14.97887 -14.83637 -14.56448 -14.29510 -13.49927 -13.26105 -12.61645 -12.48749 -12.41061 -12.16722 -12.01250 -11.88586 -11.71344 -11.59393 -10.97452 -10.77601 -10.71025 -10.13377 -9.63172 -9.39506 -8.95411 -8.82845 -8.26714 -6.16163 -4.22183 0.37897 0.80169 0.81773 2.98761 3.24931 3.32345 3.35662 3.50597 3.67471 4.00510 4.24711 4.33922 4.40984 4.55364 4.77648 5.05351 5.19963 5.25267 5.51653 5.70721 5.76490 5.86561 6.37455 6.53717 7.25806 7.33249 7.74322 7.80214 8.15616 8.82005 9.42751 10.93664 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.006992 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.410957 B = 4003.543980 C = 4876.172605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.532 4.532 8 H 0.067 0.933 9 C 0.242 3.758 10 N -1.097 6.097 11 S 2.691 3.309 12 O -0.947 6.947 13 O -0.971 6.971 14 C -0.690 4.690 15 C -0.007 4.007 16 C -0.129 4.129 17 C -0.079 4.079 18 C 0.046 3.954 19 F -0.123 7.123 20 C 0.176 3.824 21 F -0.090 7.090 22 H 0.265 0.735 23 H 0.022 0.978 24 H 0.045 0.955 25 H 0.413 0.587 26 H 0.158 0.842 27 H 0.147 0.853 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.763 -13.300 -6.814 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.572 4.572 8 H 0.085 0.915 9 C 0.119 3.881 10 N -0.861 5.861 11 S 2.775 3.225 12 O -0.937 6.937 13 O -0.961 6.961 14 C -0.773 4.773 15 C -0.026 4.026 16 C -0.148 4.148 17 C -0.098 4.098 18 C 0.025 3.975 19 F -0.101 7.101 20 C 0.154 3.846 21 F -0.068 7.068 22 H 0.075 0.925 23 H 0.040 0.960 24 H 0.063 0.937 25 H 0.248 0.752 26 H 0.176 0.824 27 H 0.165 0.835 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.996 -13.644 -6.050 14.959 hybrid contribution -0.076 1.464 -0.767 1.655 sum -1.072 -12.180 -6.817 13.999 Atomic orbital electron populations 1.69970 1.06029 1.27241 1.49111 1.24985 0.94972 0.99448 0.94774 0.86360 0.79927 0.82918 0.77714 1.19578 1.20883 1.20756 1.21222 0.93462 0.89819 1.52702 0.91487 1.19333 0.87629 0.83419 0.97712 1.55460 1.19761 1.23443 1.87430 1.02083 0.73263 0.73074 0.74059 1.93615 1.72481 1.86133 1.41500 1.93530 1.48734 1.66829 1.87042 1.31441 1.12404 1.09106 1.24353 1.20948 0.99340 0.91749 0.90584 1.21175 0.93476 1.01039 0.99142 1.21344 0.97963 0.92891 0.97590 1.17700 0.84239 0.96622 0.98941 1.91566 1.43897 1.79781 1.94903 1.17162 0.92598 0.85831 0.89043 1.91807 1.92387 1.53483 1.69086 0.92476 0.96001 0.93743 0.75184 0.82443 0.83499 0.83174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 15 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.53 -14.36 9.27 -34.44 -0.32 -14.68 15 8 H 0.07 1.71 7.65 -52.49 -0.40 1.31 15 9 C 0.24 6.08 4.31 -5.20 -0.02 6.06 15 10 N -1.10 -22.26 5.99 -11.66 -0.07 -22.33 15 11 S 2.69 49.92 5.48 -107.50 -0.59 49.33 15 12 O -0.95 -20.81 16.90 -57.17 -0.97 -21.77 15 13 O -0.97 -17.61 16.97 -57.17 -0.97 -18.58 15 14 C -0.69 -11.26 5.89 -39.53 -0.23 -11.49 15 15 C -0.01 -0.09 9.55 -39.58 -0.38 -0.47 15 16 C -0.13 -1.27 10.04 -39.58 -0.40 -1.67 15 17 C -0.08 -0.86 10.02 -39.53 -0.40 -1.26 15 18 C 0.05 0.70 7.31 -39.37 -0.29 0.41 15 19 F -0.12 -1.99 17.18 2.25 0.04 -1.95 15 20 C 0.18 3.15 6.81 -39.36 -0.27 2.88 15 21 F -0.09 -1.94 12.84 2.25 0.03 -1.91 15 22 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 23 H 0.02 0.57 6.74 -51.93 -0.35 0.22 15 24 H 0.04 1.23 7.25 -51.93 -0.38 0.85 15 25 H 0.41 7.46 8.54 -34.47 -0.29 7.17 15 26 H 0.16 1.62 7.33 -52.49 -0.38 1.23 15 27 H 0.15 0.85 8.06 -52.48 -0.42 0.43 15 28 H 0.15 1.11 8.06 -52.49 -0.42 0.69 15 LS Contribution 270.10 15.07 4.07 4.07 Total: -1.00 -32.96 270.10 -6.93 -39.89 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -1.79 Total: 0.92 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -2.40 Total: -18.61 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.67 Total: -47.26 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.94 Total: -40.35 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.07 Total: -3.86 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 49.92 SS G_CDS: -0.59 Total: 49.33 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.96 -6.93 -39.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335388806.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.378 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds