Wall clock time and date at job start Mon Mar 30 2020 01:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86794 * 119.99945 * 2 1 4 4 H 1.48498 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47413 * 299.99527 * 3 2 1 6 6 H 1.48496 * 109.47569 * 59.99688 * 3 2 1 7 7 C 1.40045 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99887 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00347 * 0.02562 * 9 7 2 11 11 N 1.34784 * 119.99945 * 180.02562 * 9 7 2 12 12 C 1.46493 * 119.99864 * 179.72843 * 11 9 7 13 13 C 1.50698 * 109.47082 * 180.02562 * 12 11 9 14 14 C 1.38454 * 119.98777 * 269.72637 * 13 12 11 15 15 F 1.35102 * 119.98240 * 359.97438 * 14 13 12 16 16 C 1.38420 * 120.03960 * 179.72375 * 14 13 12 17 17 C 1.38433 * 120.01278 * 0.54989 * 16 14 13 18 18 F 1.35102 * 120.00667 * 179.74918 * 17 16 14 19 19 C 1.38573 * 119.98605 * 359.71881 * 17 16 14 20 20 F 1.35096 * 120.01988 * 180.02562 * 19 17 16 21 21 C 1.38390 * 119.99480 * 89.99551 * 13 12 11 22 22 F 1.35105 * 120.00871 * 0.02562 * 21 13 12 23 23 H 0.97000 * 119.99610 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99339 * 0.02562 * 11 9 7 25 25 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 26 26 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 27 27 H 1.07999 * 119.98994 * 180.24526 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8820 2.3965 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4804 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0027 12 6 1.2164 -4.9163 0.0099 13 6 2.1956 -6.0618 0.0102 14 6 2.6365 -6.5957 -1.1887 15 9 2.1881 -6.0899 -2.3585 16 6 3.5403 -7.6441 -1.1897 17 6 3.9954 -8.1671 0.0085 18 9 4.8737 -9.1937 0.0074 19 6 3.5504 -7.6371 1.2090 20 9 3.9945 -8.1466 2.3787 21 6 2.6497 -6.5835 1.2089 22 9 2.2148 -6.0662 2.3788 23 1 -0.4849 0.8401 -0.0004 24 1 2.9189 -3.6477 0.0031 25 1 0.5934 -4.9712 0.9027 26 1 0.5860 -4.9770 -0.8773 27 1 3.8867 -8.0574 -2.1255 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336154586.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:17 Heat of formation + Delta-G solvation = -190.798740 kcal Electronic energy + Delta-G solvation = -20796.212858 eV Core-core repulsion = 16633.337628 eV Total energy + Delta-G solvation = -4162.875230 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.047 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.00054 -49.43307 -49.26120 -48.66376 -39.08348 -37.24729 -33.89153 -32.43699 -30.85182 -30.39408 -27.01494 -25.22782 -23.60037 -22.30068 -19.83234 -18.92907 -18.75216 -17.95778 -17.23397 -17.08331 -16.44028 -16.12161 -15.79243 -15.69898 -15.40797 -15.12140 -15.06887 -14.62316 -14.55916 -14.12212 -13.71262 -13.54782 -12.87246 -12.44139 -12.31739 -11.83956 -11.58070 -11.48785 -11.17185 -10.97418 -10.52764 -10.24007 -9.32657 -9.02941 -8.90497 -7.69255 -7.67877 -6.24030 -4.69808 0.24977 0.30218 2.59857 2.92768 3.11067 3.19457 3.23871 3.54406 3.78447 3.96820 4.00952 4.08030 4.26871 4.53186 4.88246 4.99815 5.06658 5.24946 5.35250 5.49743 5.71214 6.10723 6.17865 6.28411 7.39136 7.77977 7.92970 8.25077 8.97363 9.40170 10.52465 10.70388 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.004453 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.552110 B = 6286.799417 C = 6551.090071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.556 3.444 10 O -0.577 6.577 11 N -0.762 5.762 12 C 0.171 3.829 13 C -0.145 4.145 14 C 0.171 3.829 15 F -0.106 7.106 16 C -0.177 4.177 17 C 0.126 3.874 18 F -0.113 7.113 19 C 0.019 3.981 20 F -0.114 7.114 21 C 0.146 3.854 22 F -0.101 7.101 23 H 0.269 0.731 24 H 0.381 0.619 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.365 -15.137 -1.191 17.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.459 6.459 11 N -0.419 5.419 12 C 0.047 3.953 13 C -0.148 4.148 14 C 0.150 3.850 15 F -0.084 7.084 16 C -0.196 4.196 17 C 0.105 3.895 18 F -0.091 7.091 19 C -0.002 4.002 20 F -0.093 7.093 21 C 0.124 3.876 22 F -0.078 7.078 23 H 0.080 0.920 24 H 0.213 0.787 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.267 -15.037 -1.141 16.740 hybrid contribution 1.070 0.567 0.262 1.239 sum 8.337 -14.470 -0.879 16.723 Atomic orbital electron populations 1.70028 1.07069 1.27310 1.35085 1.25717 0.94657 1.00359 0.92576 0.86284 0.80463 0.81583 0.78251 1.18750 1.20112 1.20122 1.20878 0.93655 0.89065 1.54283 0.91258 1.18278 0.87242 0.82096 0.76346 1.90613 1.14005 1.86436 1.54879 1.46243 1.08568 1.03748 1.83308 1.19704 0.91333 0.80984 1.03322 1.20294 1.02897 1.01525 0.90041 1.16724 0.94219 0.92712 0.81361 1.91630 1.86929 1.85652 1.44228 1.20964 1.00944 0.99011 0.98709 1.16779 0.92451 0.88529 0.91693 1.91587 1.65414 1.55035 1.97102 1.17458 1.02179 0.98653 0.81932 1.91571 1.87752 1.85743 1.44193 1.16796 0.95377 0.92886 0.82528 1.91639 1.87247 1.84997 1.43961 0.92049 0.78710 0.90974 0.90735 0.81580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.73 11.83 55.55 0.66 -22.07 15 2 C 0.09 2.40 5.50 -17.37 -0.10 2.30 15 3 Si 0.91 19.91 29.56 -169.99 -5.02 14.89 15 4 H -0.26 -5.57 7.11 56.52 0.40 -5.16 15 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 7 C -0.54 -15.09 9.54 -35.63 -0.34 -15.43 15 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 15 9 C 0.56 15.54 7.75 -12.98 -0.10 15.43 15 10 O -0.58 -18.38 15.02 5.20 0.08 -18.30 15 11 N -0.76 -16.60 5.54 -62.90 -0.35 -16.95 15 12 C 0.17 3.16 5.45 -5.20 -0.03 3.13 15 13 C -0.14 -2.03 5.26 -104.49 -0.55 -2.58 15 14 C 0.17 2.05 7.24 -39.43 -0.29 1.76 15 15 F -0.11 -1.43 16.47 2.25 0.04 -1.39 15 16 C -0.18 -1.66 10.00 -39.44 -0.39 -2.06 15 17 C 0.13 1.32 7.30 -39.39 -0.29 1.03 15 18 F -0.11 -1.18 17.18 2.25 0.04 -1.14 15 19 C 0.02 0.23 7.31 -39.32 -0.29 -0.06 15 20 F -0.11 -1.47 17.09 2.25 0.04 -1.43 15 21 C 0.15 1.97 7.24 -39.39 -0.29 1.68 15 22 F -0.10 -1.55 16.39 2.25 0.04 -1.51 15 23 H 0.27 7.20 8.29 -40.82 -0.34 6.86 15 24 H 0.38 7.36 8.44 -40.82 -0.34 7.02 15 25 H 0.07 1.41 7.64 -51.93 -0.40 1.01 15 26 H 0.07 1.43 7.63 -51.93 -0.40 1.03 15 27 H 0.17 1.11 8.06 -52.49 -0.42 0.68 15 LS Contribution 270.90 15.07 4.08 4.08 Total: -1.00 -32.70 270.90 -4.16 -36.87 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -1.11 Total: 1.75 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.65 Total: 5.22 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.31 Total: -39.03 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.08 Total: -18.30 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.15 Total: -5.47 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.70 -4.16 -36.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336154586.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.933 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds