Wall clock time and date at job start Mon Mar 30 2020 01:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86794 * 119.99945 * 2 1 4 4 H 1.48498 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47413 * 299.99527 * 3 2 1 6 6 H 1.48496 * 109.47569 * 59.99688 * 3 2 1 7 7 C 1.40045 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99887 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00347 * 0.02562 * 9 7 2 11 11 N 1.34784 * 119.99945 * 180.02562 * 9 7 2 12 12 C 1.46493 * 119.99864 * 179.72843 * 11 9 7 13 13 C 1.50698 * 109.47082 * 180.02562 * 12 11 9 14 14 C 1.38454 * 119.98777 * 269.72637 * 13 12 11 15 15 F 1.35102 * 119.98240 * 359.97438 * 14 13 12 16 16 C 1.38420 * 120.03960 * 179.72375 * 14 13 12 17 17 C 1.38433 * 120.01278 * 0.54989 * 16 14 13 18 18 F 1.35102 * 120.00667 * 179.74918 * 17 16 14 19 19 C 1.38573 * 119.98605 * 359.71881 * 17 16 14 20 20 F 1.35096 * 120.01988 * 180.02562 * 19 17 16 21 21 C 1.38390 * 119.99480 * 89.99551 * 13 12 11 22 22 F 1.35105 * 120.00871 * 0.02562 * 21 13 12 23 23 H 0.97000 * 119.99610 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99339 * 0.02562 * 11 9 7 25 25 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 26 26 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 27 27 H 1.07999 * 119.98994 * 180.24526 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8820 2.3965 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4804 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0027 12 6 1.2164 -4.9163 0.0099 13 6 2.1956 -6.0618 0.0102 14 6 2.6365 -6.5957 -1.1887 15 9 2.1881 -6.0899 -2.3585 16 6 3.5403 -7.6441 -1.1897 17 6 3.9954 -8.1671 0.0085 18 9 4.8737 -9.1937 0.0074 19 6 3.5504 -7.6371 1.2090 20 9 3.9945 -8.1466 2.3787 21 6 2.6497 -6.5835 1.2089 22 9 2.2148 -6.0662 2.3788 23 1 -0.4849 0.8401 -0.0004 24 1 2.9189 -3.6477 0.0031 25 1 0.5934 -4.9712 0.9027 26 1 0.5860 -4.9770 -0.8773 27 1 3.8867 -8.0574 -2.1255 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336154586.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:17 Heat of formation + Delta-G solvation = -213.200796 kcal Electronic energy + Delta-G solvation = -20797.184284 eV Core-core repulsion = 16633.337628 eV Total energy + Delta-G solvation = -4163.846656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.047 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.99593 -50.44483 -50.29672 -49.67931 -40.23836 -39.17458 -35.61476 -34.52886 -32.22987 -31.45471 -28.85517 -26.82243 -24.59096 -23.51296 -21.82772 -19.94519 -19.77203 -19.54183 -18.58273 -18.13560 -17.51598 -17.48536 -17.14139 -16.82842 -16.71686 -16.34378 -16.09615 -15.98887 -15.87090 -15.57549 -15.27394 -15.04528 -14.35743 -13.98862 -13.54292 -13.23086 -13.18407 -12.83853 -12.74387 -12.69041 -12.61364 -11.97958 -10.95752 -10.39567 -10.06167 -9.81458 -9.62188 -8.31155 -6.87984 -0.75036 -0.65799 1.40865 1.41295 1.58704 1.62251 1.94163 2.24947 2.44272 2.56004 2.78914 2.90038 2.99791 3.15727 3.29064 3.58980 3.91401 4.11614 4.24735 4.38060 4.50081 4.60658 4.71410 5.26723 5.31335 5.82269 6.05665 6.20840 6.85007 7.44109 8.43442 8.64216 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.004453 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.552110 B = 6286.799417 C = 6551.090071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.247 1.247 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.570 4.570 8 H 0.089 0.911 9 C 0.540 3.460 10 O -0.628 6.628 11 N -0.750 5.750 12 C 0.176 3.824 13 C -0.154 4.154 14 C 0.173 3.827 15 F -0.114 7.114 16 C -0.143 4.143 17 C 0.145 3.855 18 F -0.105 7.105 19 C 0.022 3.978 20 F -0.119 7.119 21 C 0.137 3.863 22 F -0.118 7.118 23 H 0.275 0.725 24 H 0.395 0.605 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.925 -15.760 -2.040 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.170 1.170 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.606 4.606 8 H 0.107 0.893 9 C 0.345 3.655 10 O -0.515 6.515 11 N -0.405 5.405 12 C 0.051 3.949 13 C -0.156 4.156 14 C 0.153 3.847 15 F -0.092 7.092 16 C -0.162 4.162 17 C 0.124 3.876 18 F -0.084 7.084 19 C 0.000 4.000 20 F -0.097 7.097 21 C 0.116 3.884 22 F -0.096 7.096 23 H 0.085 0.915 24 H 0.229 0.771 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 9.878 -15.717 -1.989 18.670 hybrid contribution 0.307 0.602 0.516 0.850 sum 10.185 -15.115 -1.473 18.285 Atomic orbital electron populations 1.70188 1.09521 1.29014 1.36232 1.26986 0.95556 1.04983 0.91186 0.84943 0.79343 0.75301 0.78537 1.16959 1.19245 1.19441 1.21428 0.94795 0.89793 1.54590 0.89304 1.18630 0.86858 0.84005 0.76042 1.90565 1.16096 1.87688 1.57165 1.45840 1.09197 1.03810 1.81671 1.19551 0.92173 0.81203 1.01944 1.19818 1.03372 1.01000 0.91426 1.16740 0.94592 0.93245 0.80162 1.91620 1.87173 1.85943 1.44513 1.21179 0.98415 0.96760 0.99810 1.16703 0.91700 0.88009 0.91149 1.91623 1.65064 1.54647 1.97024 1.17457 1.01857 0.98245 0.82425 1.91564 1.87726 1.85699 1.44723 1.16802 0.96215 0.93688 0.81695 1.91594 1.87660 1.85448 1.44896 0.91460 0.77128 0.92760 0.91808 0.77677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.97 11.83 21.84 0.26 -49.72 15 2 C 0.03 1.56 5.50 85.30 0.47 2.03 15 3 Si 1.00 40.58 29.56 68.60 2.03 42.61 15 4 H -0.25 -9.23 7.11 99.48 0.71 -8.52 15 5 H -0.27 -10.43 7.11 99.48 0.71 -9.73 15 6 H -0.27 -10.58 7.11 99.48 0.71 -9.87 15 7 C -0.57 -32.03 9.54 24.83 0.24 -31.79 15 8 H 0.09 4.47 7.85 -2.91 -0.02 4.44 15 9 C 0.54 31.16 7.75 86.36 0.67 31.83 15 10 O -0.63 -41.93 15.02 -4.32 -0.06 -42.00 15 11 N -0.75 -33.43 5.54 -471.13 -2.61 -36.04 15 12 C 0.18 6.71 5.45 85.63 0.47 7.18 15 13 C -0.15 -4.24 5.26 -19.78 -0.10 -4.34 15 14 C 0.17 3.79 7.24 22.36 0.16 3.96 15 15 F -0.11 -2.89 16.47 44.97 0.74 -2.15 15 16 C -0.14 -2.11 10.00 22.36 0.22 -1.88 15 17 C 0.15 2.51 7.30 22.40 0.16 2.67 15 18 F -0.11 -1.77 17.18 44.97 0.77 -1.00 15 19 C 0.02 0.48 7.31 22.44 0.16 0.64 15 20 F -0.12 -2.86 17.09 44.97 0.77 -2.10 15 21 C 0.14 3.63 7.24 22.40 0.16 3.79 15 22 F -0.12 -3.71 16.39 44.97 0.74 -2.97 15 23 H 0.28 15.13 8.29 -92.71 -0.77 14.36 15 24 H 0.40 15.25 8.44 -92.71 -0.78 14.47 15 25 H 0.05 2.25 7.64 -2.38 -0.02 2.23 15 26 H 0.06 2.56 7.63 -2.38 -0.02 2.54 15 27 H 0.21 1.54 8.06 -2.91 -0.02 1.52 15 Total: -1.00 -73.56 270.90 5.73 -67.83 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.49 Total: 11.44 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 2.61 Total: 14.09 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -2.35 Total: -85.75 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -0.06 Total: -42.00 kcal Atomic # 9 Polarization: -11.23 SS G_CDS: 3.02 Total: -8.21 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -73.56 5.73 -67.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336154586.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.368 kcal (2) G-P(sol) polarization free energy of solvation -73.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds