Wall clock time and date at job start Mon Mar 30 2020 01:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36906 * 119.99808 * 2 1 4 4 H 1.08004 * 119.99755 * 186.88076 * 3 2 1 5 5 C 1.39020 * 120.00061 * 6.88217 * 3 2 1 6 6 N 1.31378 * 120.00253 * 7.61816 * 5 3 2 7 7 Si 1.86808 * 119.99957 * 187.62125 * 5 3 2 8 8 H 1.48492 * 109.47029 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47119 * 119.99620 * 7 5 3 10 10 H 1.48501 * 109.46591 * 239.99858 * 7 5 3 11 11 C 1.34774 * 120.00119 * 180.02562 * 2 1 3 12 12 O 1.21616 * 120.00183 * 3.74475 * 11 2 1 13 13 C 1.47483 * 120.00066 * 183.74054 * 11 2 1 14 14 C 1.39817 * 120.12953 * 305.86336 * 13 11 2 15 15 C 1.37914 * 119.91078 * 179.97438 * 14 13 11 16 16 F 1.35102 * 119.91841 * 179.97438 * 15 14 13 17 17 C 1.38913 * 120.17203 * 359.97071 * 15 14 13 18 18 F 1.35104 * 119.86766 * 179.74497 * 17 15 14 19 19 C 1.38625 * 120.26380 * 0.02800 * 17 15 14 20 20 F 1.35094 * 119.95837 * 179.97438 * 19 17 15 21 21 C 1.38386 * 120.08400 * 359.97438 * 19 17 15 22 22 F 1.35097 * 120.08403 * 180.02562 * 21 19 17 23 23 H 1.09004 * 109.46761 * 174.80583 * 1 2 3 24 24 H 1.09002 * 109.46919 * 294.80252 * 1 2 3 25 25 H 1.09001 * 109.47277 * 54.80471 * 1 2 3 26 26 H 0.96998 * 120.00298 * 180.02562 * 6 5 3 27 27 H 1.08010 * 120.04131 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1857 0.0000 4 1 3.2236 1.1890 -0.1121 5 6 1.4618 2.3853 0.1443 6 7 0.1795 2.3772 0.4297 7 14 2.3612 4.0088 -0.0679 8 1 3.7884 3.7464 -0.3831 9 1 1.7418 4.7764 -1.1779 10 1 2.2685 4.7938 1.1892 11 6 2.1388 -1.1672 -0.0005 12 8 1.5328 -2.2193 -0.0698 13 6 3.6113 -1.1685 0.0828 14 6 4.3667 -0.4287 -0.8320 15 6 5.7434 -0.4328 -0.7496 16 9 6.4735 0.2816 -1.6339 17 6 6.3814 -1.1696 0.2403 18 9 7.7305 -1.1733 0.3121 19 6 5.6395 -1.9056 1.1510 20 9 6.2663 -2.6203 2.1109 21 6 4.2575 -1.9092 1.0782 22 9 3.5345 -2.6261 1.9661 23 1 -0.3633 -1.0235 -0.0930 24 1 -0.3633 0.4311 0.9329 25 1 -0.3634 0.5923 -0.8398 26 1 -0.3004 3.2142 0.5300 27 1 3.8727 0.1452 -1.6022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336555854.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:24 Heat of formation + Delta-G solvation = -177.489066 kcal Electronic energy + Delta-G solvation = -21630.266487 eV Core-core repulsion = 17467.968408 eV Total energy + Delta-G solvation = -4162.298079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.047 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.09211 -50.66287 -50.06377 -49.56762 -41.08890 -39.05121 -36.93031 -33.60295 -32.29918 -31.40513 -28.48624 -26.93971 -24.94023 -24.47080 -21.57085 -20.24703 -19.72496 -19.52536 -18.62337 -18.27620 -17.82621 -17.59681 -17.00254 -16.97856 -16.47716 -16.25423 -16.13283 -16.05724 -15.75700 -15.71016 -15.59061 -14.96161 -14.44310 -13.74459 -13.52450 -13.40378 -13.21406 -12.96515 -12.77819 -12.65745 -12.25370 -12.01638 -11.18319 -10.77190 -10.21390 -10.06129 -9.96683 -8.34444 -6.01338 -0.85504 -0.65347 1.27671 1.49058 1.54325 1.61580 1.77739 1.95600 2.22431 2.53545 2.59753 2.83490 3.00923 3.12556 3.20616 3.43234 3.87793 4.26188 4.35756 4.47674 4.65229 4.79335 5.08004 5.24393 5.33490 5.35454 5.59944 6.25958 6.94774 7.32889 7.74017 8.58549 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.017437 B = 0.007850 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.396421 B = 3565.903656 C = 4572.913859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.424 5.424 3 C -0.363 4.363 4 H 0.127 0.873 5 C 0.001 3.999 6 N -0.886 5.886 7 Si 0.990 3.010 8 H -0.248 1.248 9 H -0.274 1.274 10 H -0.280 1.280 11 C 0.461 3.539 12 O -0.631 6.631 13 C -0.075 4.075 14 C -0.064 4.064 15 C 0.102 3.898 16 F -0.107 7.107 17 C 0.076 3.924 18 F -0.106 7.106 19 C 0.066 3.934 20 F -0.109 7.109 21 C 0.109 3.891 22 F -0.118 7.118 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.276 0.724 27 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.173 -0.077 -1.756 10.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.137 5.137 3 C -0.490 4.490 4 H 0.145 0.855 5 C -0.203 4.203 6 N -0.523 5.523 7 Si 0.812 3.188 8 H -0.171 1.171 9 H -0.199 1.199 10 H -0.206 1.206 11 C 0.250 3.750 12 O -0.521 6.521 13 C -0.080 4.080 14 C -0.084 4.084 15 C 0.082 3.918 16 F -0.086 7.086 17 C 0.054 3.946 18 F -0.084 7.084 19 C 0.044 3.956 20 F -0.087 7.087 21 C 0.087 3.913 22 F -0.096 7.096 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 9.726 -0.419 -1.711 9.884 hybrid contribution 0.195 0.541 0.399 0.700 sum 9.921 0.122 -1.312 10.008 Atomic orbital electron populations 1.21524 0.78977 0.97916 1.03168 1.43944 1.06946 1.05141 1.57679 1.20573 0.94646 0.82584 1.51203 0.85537 1.26279 0.96478 1.03110 0.94460 1.70255 1.09430 1.29059 1.43572 0.84890 0.79322 0.76498 0.78052 1.17149 1.19881 1.20590 1.17633 0.86397 0.84047 0.86942 1.90664 1.69431 1.31940 1.60081 1.19647 0.95122 0.97585 0.95597 1.21294 0.90431 0.97149 0.99515 1.16858 0.88716 0.96066 0.90187 1.91600 1.76558 1.75097 1.65306 1.17092 0.78078 1.01810 0.97640 1.91585 1.26216 1.94988 1.95627 1.16756 0.87869 0.99234 0.91698 1.91570 1.81605 1.75362 1.60203 1.17349 0.86997 0.96069 0.90846 1.91552 1.77357 1.75186 1.65555 0.94177 0.91240 0.92343 0.91358 0.79915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.03 8.87 127.77 1.13 7.17 15 2 N -0.42 -20.30 3.02 -662.59 -2.00 -22.30 15 3 C -0.36 -16.43 8.78 84.09 0.74 -15.69 15 4 H 0.13 5.11 4.64 -2.91 -0.01 5.09 15 5 C 0.00 0.03 5.39 84.95 0.46 0.49 15 6 N -0.89 -42.16 9.63 21.68 0.21 -41.95 15 7 Si 0.99 35.02 29.56 68.60 2.03 37.05 15 8 H -0.25 -8.11 7.11 99.48 0.71 -7.40 15 9 H -0.27 -9.58 7.11 99.48 0.71 -8.87 15 10 H -0.28 -10.05 7.11 99.48 0.71 -9.35 15 11 C 0.46 21.66 6.86 86.68 0.59 22.26 15 12 O -0.63 -33.39 16.20 -4.08 -0.07 -33.46 15 13 C -0.07 -2.86 5.03 -20.06 -0.10 -2.96 15 14 C -0.06 -2.00 7.42 22.58 0.17 -1.83 15 15 C 0.10 2.80 7.29 22.35 0.16 2.97 15 16 F -0.11 -2.77 17.17 44.97 0.77 -1.99 15 17 C 0.08 2.10 7.31 22.52 0.16 2.26 15 18 F -0.11 -2.80 17.08 44.97 0.77 -2.03 15 19 C 0.07 2.02 7.30 22.40 0.16 2.19 15 20 F -0.11 -3.28 17.08 44.97 0.77 -2.52 15 21 C 0.11 3.96 7.27 22.71 0.17 4.13 15 22 F -0.12 -4.77 16.56 44.97 0.74 -4.03 15 23 H 0.04 1.89 6.91 -2.39 -0.02 1.87 15 24 H 0.07 3.45 6.75 -2.39 -0.02 3.43 15 25 H 0.06 2.76 7.41 -2.39 -0.02 2.75 15 26 H 0.28 12.33 8.31 -92.71 -0.77 11.56 15 27 H 0.18 5.36 7.23 -2.91 -0.02 5.34 15 Total: -1.00 -53.98 260.40 8.14 -45.84 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 1.27 Total: 4.41 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 3.65 Total: 20.98 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -1.79 Total: -64.25 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.07 Total: -33.46 kcal Atomic # 9 Polarization: -13.63 SS G_CDS: 3.05 Total: -10.57 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Total: -53.98 8.14 -45.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336555854.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.649 kcal (2) G-P(sol) polarization free energy of solvation -53.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds