Wall clock time and date at job start Mon Mar 30 2020 01:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00007 * 2 1 4 4 H 1.48494 * 109.47281 * 269.99745 * 3 2 1 5 5 H 1.48501 * 109.47303 * 30.00411 * 3 2 1 6 6 H 1.48503 * 109.47102 * 150.00171 * 3 2 1 7 7 C 1.38799 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99561 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00181 * 179.97438 * 7 2 1 10 10 C 1.81001 * 100.00255 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47165 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00282 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99660 * 180.02562 * 11 10 9 14 14 C 1.39968 * 119.99738 * 184.57667 * 13 11 10 15 15 C 1.39349 * 119.73459 * 324.85484 * 14 13 11 16 16 C 1.36630 * 120.35006 * 179.97438 * 15 14 13 17 17 C 1.39463 * 119.80616 * 359.96841 * 16 15 14 18 18 C 1.46822 * 134.26116 * 180.02562 * 17 16 15 19 19 C 1.33977 * 106.19290 * 180.02562 * 18 17 16 20 20 O 1.34500 * 110.15554 * 0.23055 * 19 18 17 21 21 C 1.34826 * 110.88359 * 359.60884 * 20 19 18 22 22 C 1.38467 * 119.73751 * 144.83931 * 14 13 11 23 23 H 0.96998 * 120.00170 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46810 * 59.99677 * 10 9 7 25 25 H 1.09000 * 109.46926 * 300.00802 * 10 9 7 26 26 H 0.97000 * 120.00388 * 4.57222 * 13 11 10 27 27 H 1.07995 * 119.82465 * 359.97438 * 15 14 13 28 28 H 1.08001 * 120.09586 * 179.97438 * 16 15 14 29 29 H 1.07998 * 126.90526 * 0.02562 * 18 17 16 30 30 H 1.08000 * 124.91770 * 179.97438 * 19 18 17 31 31 H 1.07999 * 120.11659 * 0.03809 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4702 -2.1373 0.0014 9 16 3.7722 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5729 -3.2326 0.0002 12 8 6.3440 -2.2963 -0.0003 13 7 6.0455 -4.4948 -0.0001 14 6 7.4225 -4.7265 0.0968 15 6 8.3159 -3.8459 -0.5100 16 6 9.6625 -4.0597 -0.4229 17 6 10.1451 -5.1649 0.2775 18 6 11.4857 -5.6890 0.5672 19 6 11.3036 -6.7989 1.2952 20 8 9.9902 -7.0199 1.4827 21 6 9.2520 -6.0587 0.8921 22 6 7.8861 -5.8288 0.7949 23 1 -0.4850 0.8400 0.0004 24 1 3.6432 -3.4318 -0.8896 25 1 3.6439 -3.4314 0.8903 26 1 5.4314 -5.2426 -0.0673 27 1 7.9419 -2.9898 -1.0518 28 1 10.3513 -3.3747 -0.8951 29 1 12.4290 -5.2651 0.2559 30 1 12.0965 -7.4273 1.6731 31 1 7.1877 -6.5072 1.2623 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343955972.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:51 Heat of formation + Delta-G solvation = -0.918628 kcal Electronic energy + Delta-G solvation = -17633.282583 eV Core-core repulsion = 14586.711088 eV Total energy + Delta-G solvation = -3046.571494 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.54718 -40.20213 -37.62126 -34.63115 -32.50951 -32.47600 -30.57149 -30.08760 -27.87391 -25.66833 -23.53765 -22.67745 -21.61538 -20.45532 -18.22366 -17.83362 -17.47317 -16.84531 -16.26854 -16.02125 -15.23426 -15.03284 -14.70690 -14.14245 -14.04659 -13.76642 -13.53801 -13.05971 -12.84940 -12.73353 -12.36170 -12.05388 -11.32321 -11.27806 -11.05083 -10.70655 -10.67310 -9.91696 -9.79396 -9.67913 -9.05133 -8.64302 -8.58839 -7.97519 -6.99325 -6.33587 -4.06694 0.72989 1.27887 2.14528 2.38300 2.73838 2.76827 3.23516 3.29948 3.46479 3.55122 3.63896 4.28344 4.34067 4.51960 4.59751 4.85759 5.00435 5.05439 5.06310 5.18437 5.26267 5.46181 5.57519 5.62868 5.88169 5.91624 6.08889 6.13644 6.24793 6.38750 6.66896 7.01854 7.31897 7.89271 8.19447 8.36886 9.12132 10.75567 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.052774 B = 0.003271 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.440187 B = 8557.048235 C = 8927.569156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.089 0.911 9 S -0.137 6.137 10 C -0.125 4.125 11 C 0.533 3.467 12 O -0.496 6.496 13 N -0.677 5.677 14 C 0.189 3.811 15 C -0.133 4.133 16 C -0.053 4.053 17 C -0.153 4.153 18 C -0.204 4.204 19 C -0.004 4.004 20 O -0.197 6.197 21 C 0.070 3.930 22 C -0.146 4.146 23 H 0.271 0.729 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.413 0.587 27 H 0.150 0.850 28 H 0.131 0.869 29 H 0.156 0.844 30 H 0.206 0.794 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.813 -14.122 0.427 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.107 0.893 9 S 0.089 5.911 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.368 6.368 13 N -0.324 5.324 14 C 0.093 3.907 15 C -0.153 4.153 16 C -0.072 4.072 17 C -0.154 4.154 18 C -0.223 4.223 19 C -0.069 4.069 20 O -0.099 6.099 21 C 0.022 3.978 22 C -0.167 4.167 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.249 0.751 27 H 0.167 0.833 28 H 0.149 0.851 29 H 0.174 0.826 30 H 0.222 0.778 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 20.706 -12.624 0.580 24.258 hybrid contribution -0.956 -0.663 -0.042 1.164 sum 19.750 -13.288 0.538 23.810 Atomic orbital electron populations 1.69931 1.05917 1.27858 1.47798 1.24711 0.94460 0.98988 0.93115 0.86740 0.81892 0.83288 0.79967 1.19155 1.19867 1.15912 1.22293 0.88056 0.97616 1.59098 0.89261 1.84818 1.09586 0.99254 1.97464 1.23290 0.92763 1.05111 1.06358 1.20530 0.91120 0.81631 0.74716 1.90705 1.58392 1.41958 1.45723 1.43605 1.05176 1.09489 1.74084 1.17320 0.83747 0.94503 0.95112 1.21048 0.92178 1.01002 1.01030 1.20186 0.95036 0.95097 0.96876 1.19957 0.92924 0.98380 1.04152 1.22505 0.97005 0.98190 1.04591 1.23888 0.82887 0.99120 1.00995 1.84000 1.17185 1.44708 1.63959 1.19117 0.92503 0.88996 0.97154 1.19383 0.90962 1.01500 1.04882 0.91857 0.87930 0.87894 0.75061 0.83258 0.85131 0.82617 0.77769 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.14 13.97 55.49 0.78 -25.36 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.38 27.74 -169.99 -4.72 16.66 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 7 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 8 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 9 S -0.14 -3.35 18.55 -107.50 -1.99 -5.35 16 10 C -0.12 -2.26 6.16 36.00 0.22 -2.04 16 11 C 0.53 8.93 7.69 -10.99 -0.08 8.85 16 12 O -0.50 -9.98 13.27 5.55 0.07 -9.90 16 13 N -0.68 -8.59 5.33 -9.84 -0.05 -8.64 16 14 C 0.19 2.50 6.29 -83.64 -0.53 1.98 16 15 C -0.13 -1.85 8.62 -39.75 -0.34 -2.19 16 16 C -0.05 -0.65 10.04 -39.71 -0.40 -1.05 16 17 C -0.15 -1.86 6.40 -105.11 -0.67 -2.53 16 18 C -0.20 -1.89 11.14 -37.61 -0.42 -2.31 16 19 C 0.00 -0.03 11.96 29.23 0.35 0.31 16 20 O -0.20 -2.23 10.58 3.72 0.04 -2.19 16 21 C 0.07 0.88 7.41 -38.50 -0.29 0.59 16 22 C -0.15 -1.75 9.98 -39.27 -0.39 -2.14 16 23 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.10 1.69 8.14 -51.91 -0.42 1.26 16 25 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 26 H 0.41 3.76 8.82 -40.82 -0.36 3.40 16 27 H 0.15 2.29 6.19 -52.49 -0.33 1.97 16 28 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.21 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 291.48 15.07 4.39 4.39 Total: -1.00 -33.87 291.48 -6.61 -40.48 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -2.80 Total: 2.15 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -2.33 Total: -12.24 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.72 Total: -34.00 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.11 Total: -12.10 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.72 Total: 16.66 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.87 -6.61 -40.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343955972.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.565 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds