Wall clock time and date at job start Mon Mar 30 2020 01:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00007 * 2 1 4 4 H 1.48494 * 109.47281 * 269.99745 * 3 2 1 5 5 H 1.48501 * 109.47303 * 30.00411 * 3 2 1 6 6 H 1.48503 * 109.47102 * 150.00171 * 3 2 1 7 7 C 1.38799 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99561 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00181 * 179.97438 * 7 2 1 10 10 C 1.81001 * 100.00255 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47165 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00282 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99660 * 180.02562 * 11 10 9 14 14 C 1.39968 * 119.99738 * 184.57667 * 13 11 10 15 15 C 1.39349 * 119.73459 * 324.85484 * 14 13 11 16 16 C 1.36630 * 120.35006 * 179.97438 * 15 14 13 17 17 C 1.39463 * 119.80616 * 359.96841 * 16 15 14 18 18 C 1.46822 * 134.26116 * 180.02562 * 17 16 15 19 19 C 1.33977 * 106.19290 * 180.02562 * 18 17 16 20 20 O 1.34500 * 110.15554 * 0.23055 * 19 18 17 21 21 C 1.34826 * 110.88359 * 359.60884 * 20 19 18 22 22 C 1.38467 * 119.73751 * 144.83931 * 14 13 11 23 23 H 0.96998 * 120.00170 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46810 * 59.99677 * 10 9 7 25 25 H 1.09000 * 109.46926 * 300.00802 * 10 9 7 26 26 H 0.97000 * 120.00388 * 4.57222 * 13 11 10 27 27 H 1.07995 * 119.82465 * 359.97438 * 15 14 13 28 28 H 1.08001 * 120.09586 * 179.97438 * 16 15 14 29 29 H 1.07998 * 126.90526 * 0.02562 * 18 17 16 30 30 H 1.08000 * 124.91770 * 179.97438 * 19 18 17 31 31 H 1.07999 * 120.11659 * 0.03809 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4702 -2.1373 0.0014 9 16 3.7722 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5729 -3.2326 0.0002 12 8 6.3440 -2.2963 -0.0003 13 7 6.0455 -4.4948 -0.0001 14 6 7.4225 -4.7265 0.0968 15 6 8.3159 -3.8459 -0.5100 16 6 9.6625 -4.0597 -0.4229 17 6 10.1451 -5.1649 0.2775 18 6 11.4857 -5.6890 0.5672 19 6 11.3036 -6.7989 1.2952 20 8 9.9902 -7.0199 1.4827 21 6 9.2520 -6.0587 0.8921 22 6 7.8861 -5.8288 0.7949 23 1 -0.4850 0.8400 0.0004 24 1 3.6432 -3.4318 -0.8896 25 1 3.6439 -3.4314 0.8903 26 1 5.4314 -5.2426 -0.0673 27 1 7.9419 -2.9898 -1.0518 28 1 10.3513 -3.3747 -0.8951 29 1 12.4290 -5.2651 0.2559 30 1 12.0965 -7.4273 1.6731 31 1 7.1877 -6.5072 1.2623 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343955972.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:51 Heat of formation + Delta-G solvation = -23.525479 kcal Electronic energy + Delta-G solvation = -17634.262889 eV Core-core repulsion = 14586.711088 eV Total energy + Delta-G solvation = -3047.551801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.36588 -41.40052 -38.69613 -35.74885 -34.67444 -33.36480 -31.53825 -31.32548 -28.91727 -27.84283 -24.45579 -23.71828 -22.45877 -21.56365 -20.00309 -18.88647 -18.42700 -18.13334 -17.28374 -17.10623 -17.00771 -16.50651 -15.92385 -15.45863 -15.22491 -14.95276 -14.82235 -14.64092 -13.95682 -13.75028 -13.41968 -13.35267 -13.12866 -13.00758 -12.69693 -12.17499 -11.87976 -11.65161 -11.17280 -11.05817 -10.68755 -10.55595 -9.58796 -9.02257 -8.86680 -8.51751 -6.22844 -0.16515 0.30558 0.92941 1.29286 1.31690 1.40404 1.50017 1.58505 1.75870 2.22105 2.25890 2.68110 2.68665 2.86754 3.54736 3.65881 3.77996 4.06502 4.10107 4.19634 4.31606 4.40626 4.47281 4.70288 4.73799 5.02659 5.14667 5.21295 5.38545 5.52057 5.69761 5.70732 6.12064 6.16711 6.26859 6.93357 6.98169 8.60569 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.052774 B = 0.003271 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.440187 B = 8557.048235 C = 8927.569156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.236 1.236 7 C -0.528 4.528 8 H 0.065 0.935 9 S -0.171 6.171 10 C -0.110 4.110 11 C 0.539 3.461 12 O -0.534 6.534 13 N -0.654 5.654 14 C 0.167 3.833 15 C -0.150 4.150 16 C -0.060 4.060 17 C -0.163 4.163 18 C -0.219 4.219 19 C 0.010 3.990 20 O -0.206 6.206 21 C 0.048 3.952 22 C -0.136 4.136 23 H 0.277 0.723 24 H 0.123 0.877 25 H 0.121 0.879 26 H 0.431 0.569 27 H 0.129 0.871 28 H 0.147 0.853 29 H 0.182 0.818 30 H 0.253 0.747 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.126 -15.598 0.957 27.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.160 1.160 7 C -0.676 4.676 8 H 0.083 0.917 9 S 0.056 5.944 10 C -0.261 4.261 11 C 0.326 3.674 12 O -0.410 6.410 13 N -0.302 5.302 14 C 0.072 3.928 15 C -0.170 4.170 16 C -0.078 4.078 17 C -0.165 4.165 18 C -0.238 4.238 19 C -0.053 4.053 20 O -0.108 6.108 21 C 0.000 4.000 22 C -0.157 4.157 23 H 0.086 0.914 24 H 0.141 0.859 25 H 0.139 0.861 26 H 0.271 0.729 27 H 0.147 0.853 28 H 0.165 0.835 29 H 0.199 0.801 30 H 0.268 0.732 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 23.020 -14.155 1.109 27.046 hybrid contribution -1.521 -0.440 -0.187 1.594 sum 21.499 -14.595 0.922 26.001 Atomic orbital electron populations 1.70011 1.07319 1.29036 1.49120 1.25557 0.95258 1.02268 0.92937 0.85880 0.80701 0.79664 0.80220 1.18663 1.18495 1.15980 1.22455 0.90158 0.96760 1.58225 0.91693 1.84736 1.06548 1.05539 1.97621 1.23250 0.94347 1.00221 1.08278 1.20183 0.90069 0.82510 0.74623 1.90703 1.58893 1.43448 1.47952 1.43210 1.05638 1.08598 1.72716 1.17350 0.83423 0.95409 0.96648 1.21001 0.93262 1.00879 1.01861 1.20358 0.94718 0.95704 0.97033 1.20366 0.94679 0.97988 1.03433 1.22871 0.96764 0.98754 1.05392 1.24856 0.82371 0.98925 0.99185 1.84016 1.18501 1.44425 1.63868 1.19342 0.92977 0.89750 0.97940 1.19536 0.91529 1.00892 1.03708 0.91365 0.85934 0.86087 0.72908 0.85270 0.83516 0.80096 0.73154 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.28 13.97 21.65 0.30 -54.97 16 2 C 0.05 2.62 5.50 84.86 0.47 3.09 16 3 Si 0.91 44.36 27.74 68.60 1.90 46.26 16 4 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.24 -11.40 6.74 99.48 0.67 -10.73 16 7 C -0.53 -30.04 10.04 67.95 0.68 -29.36 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 9 S -0.17 -8.34 18.55 -56.49 -1.05 -9.39 16 10 C -0.11 -3.89 6.16 71.23 0.44 -3.45 16 11 C 0.54 17.70 7.69 87.65 0.67 18.37 16 12 O -0.53 -21.67 13.27 -3.05 -0.04 -21.71 16 13 N -0.65 -15.76 5.33 -303.42 -1.62 -17.38 16 14 C 0.17 4.28 6.29 38.16 0.24 4.52 16 15 C -0.15 -4.20 8.62 22.16 0.19 -4.01 16 16 C -0.06 -1.43 10.04 22.19 0.22 -1.21 16 17 C -0.16 -3.71 6.40 -20.18 -0.13 -3.84 16 18 C -0.22 -3.43 11.14 23.55 0.26 -3.17 16 19 C 0.01 0.13 11.96 66.85 0.80 0.93 16 20 O -0.21 -4.12 10.58 -9.61 -0.10 -4.22 16 21 C 0.05 1.12 7.41 22.97 0.17 1.29 16 22 C -0.14 -3.03 9.98 22.47 0.22 -2.80 16 23 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 24 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 25 H 0.12 3.86 8.14 -2.40 -0.02 3.84 16 26 H 0.43 6.95 8.82 -92.71 -0.82 6.13 16 27 H 0.13 4.12 6.19 -2.91 -0.02 4.10 16 28 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 29 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.25 0.55 8.06 -2.91 -0.02 0.53 16 31 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -74.50 291.48 3.96 -70.54 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.32 Total: 10.52 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 4.24 Total: -19.65 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -1.31 Total: -72.35 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.14 Total: -25.93 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.90 Total: 46.26 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.05 Total: -9.39 kcal Total: -74.50 3.96 -70.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343955972.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.010 kcal (2) G-P(sol) polarization free energy of solvation -74.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds