Wall clock time and date at job start Mon Mar 30 2020 01:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48493 * 109.46782 * 269.99904 * 3 2 1 5 5 H 1.48503 * 109.46800 * 29.99587 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99598 * 3 2 1 7 7 C 1.38802 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99838 * 359.97438 * 7 2 1 9 9 S 1.76202 * 119.99989 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00066 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21303 * 119.99816 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.40765 * 119.99854 * 179.72930 * 13 11 10 15 15 C 1.40256 * 126.07665 * 359.67851 * 14 13 11 16 16 N 1.30835 * 108.33208 * 179.85777 * 15 14 13 17 17 N 1.40069 * 108.36885 * 0.40885 * 16 15 14 18 18 C 1.46494 * 126.05463 * 179.70509 * 17 16 15 19 19 F 1.39898 * 109.47536 * 30.04021 * 18 17 16 20 20 F 1.39903 * 109.47544 * 150.04493 * 18 17 16 21 21 C 1.35755 * 126.08137 * 179.97438 * 14 13 11 22 22 H 0.97003 * 119.99714 * 0.02562 * 1 2 3 23 23 H 1.09009 * 109.46810 * 59.99567 * 10 9 7 24 24 H 1.08998 * 109.46824 * 300.00077 * 10 9 7 25 25 H 0.97001 * 120.00485 * 359.71840 * 13 11 10 26 26 H 1.07995 * 125.83761 * 0.03378 * 15 14 13 27 27 H 1.09002 * 109.47090 * 270.04209 * 18 17 16 28 28 H 1.07992 * 126.21724 * 359.94059 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5731 -3.2325 0.0026 12 8 6.3442 -2.2961 0.0014 13 7 6.0456 -4.4947 -0.0021 14 6 7.4341 -4.7264 -0.0078 15 6 8.4353 -3.7442 -0.0155 16 7 9.5988 -4.3426 -0.0158 17 7 9.3833 -5.7266 -0.0179 18 6 10.4210 -6.7607 -0.0250 19 9 11.5604 -6.2826 0.6309 20 9 9.9478 -7.9008 0.6333 21 6 8.0421 -5.9402 -0.0124 22 1 -0.4850 0.8401 -0.0004 23 1 3.6439 -3.4322 -0.8874 24 1 3.6433 -3.4309 0.8926 25 1 5.4290 -5.2435 -0.0014 26 1 8.2735 -2.6764 -0.0176 27 1 10.6740 -7.0143 -1.0545 28 1 7.5489 -6.9009 -0.0115 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345177926.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:05 Heat of formation + Delta-G solvation = -42.656780 kcal Electronic energy + Delta-G solvation = -18088.666812 eV Core-core repulsion = 14518.348637 eV Total energy + Delta-G solvation = -3570.318175 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.044 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.69845 -47.81620 -41.54076 -39.26789 -34.80501 -32.59146 -32.48299 -30.44720 -28.68546 -25.95859 -25.61287 -22.29989 -21.64980 -20.45173 -18.58601 -18.45808 -17.99250 -17.75978 -16.63768 -16.22960 -15.52596 -15.04816 -14.94423 -14.67945 -14.57345 -14.18567 -14.04728 -13.73692 -13.61912 -13.08386 -12.83111 -12.70461 -12.38367 -11.31645 -11.19468 -11.04950 -10.94137 -10.69597 -9.91468 -9.90449 -9.68269 -9.04588 -8.57885 -8.04299 -6.98159 -6.33123 -4.06025 1.27472 1.53533 2.34096 2.62759 3.06742 3.07497 3.19007 3.30473 3.47142 3.52590 3.72943 4.05532 4.28821 4.34603 4.61786 4.82390 5.06020 5.08709 5.24999 5.38202 5.63956 5.87454 5.99153 6.28913 6.67626 7.19992 7.41934 7.89636 8.24063 8.37220 9.12695 10.75942 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.060292 B = 0.003177 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.296999 B = 8811.387456 C = 9223.959269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.524 4.524 8 H 0.089 0.911 9 S -0.136 6.136 10 C -0.123 4.123 11 C 0.535 3.465 12 O -0.505 6.505 13 N -0.650 5.650 14 C 0.033 3.967 15 C 0.071 3.929 16 N -0.265 5.265 17 N -0.444 5.444 18 C 0.520 3.480 19 F -0.174 7.174 20 F -0.184 7.184 21 C 0.017 3.983 22 H 0.271 0.729 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.412 0.588 26 H 0.217 0.783 27 H 0.154 0.846 28 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.178 -16.335 -1.438 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.107 0.893 9 S 0.090 5.910 10 C -0.273 4.273 11 C 0.322 3.678 12 O -0.378 6.378 13 N -0.297 5.297 14 C -0.072 4.072 15 C -0.119 4.119 16 N -0.084 5.084 17 N -0.240 5.240 18 C 0.386 3.614 19 F -0.156 7.156 20 F -0.165 7.165 21 C -0.126 4.126 22 H 0.081 0.919 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.248 0.752 26 H 0.233 0.767 27 H 0.171 0.829 28 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 19.608 -14.643 -1.401 24.512 hybrid contribution -2.070 -1.013 0.183 2.312 sum 17.539 -15.656 -1.218 23.541 Atomic orbital electron populations 1.69935 1.05921 1.27836 1.47805 1.24711 0.94457 0.98986 0.93110 0.86741 0.81898 0.83284 0.79964 1.19174 1.19893 1.15884 1.22298 0.88124 0.97597 1.59099 0.89287 1.84822 1.09491 0.99251 1.97456 1.23252 0.92719 1.05099 1.06265 1.20441 0.91032 0.81399 0.74902 1.90583 1.58262 1.42092 1.46874 1.42994 1.03353 1.09188 1.74189 1.17852 0.85288 0.92530 1.11539 1.24879 0.87204 1.02052 0.97803 1.77541 1.23134 0.84510 1.23198 1.49494 1.04957 1.06339 1.63233 1.21160 0.73753 0.73149 0.93349 1.93128 1.49963 1.88413 1.84051 1.93123 1.88749 1.50218 1.84433 1.21748 0.83367 0.99102 1.08415 0.91881 0.88012 0.87981 0.75209 0.76684 0.82945 0.79949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 13.97 55.49 0.78 -25.19 15 2 C 0.10 2.75 5.50 -17.43 -0.10 2.65 15 3 Si 0.86 21.24 27.74 -169.99 -4.72 16.53 15 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.23 -5.79 6.74 56.52 0.38 -5.41 15 7 C -0.52 -14.57 10.04 30.94 0.31 -14.26 15 8 H 0.09 2.58 8.03 -52.49 -0.42 2.15 15 9 S -0.14 -3.28 18.55 -107.50 -1.99 -5.27 15 10 C -0.12 -2.16 6.16 36.01 0.22 -1.94 15 11 C 0.53 8.62 7.82 -10.98 -0.09 8.54 15 12 O -0.50 -9.73 13.02 5.54 0.07 -9.66 15 13 N -0.65 -7.70 5.47 -10.03 -0.05 -7.76 15 14 C 0.03 0.40 6.90 -83.88 -0.58 -0.18 15 15 C 0.07 1.01 10.84 -17.22 -0.19 0.82 15 16 N -0.26 -3.63 12.40 30.70 0.38 -3.25 15 17 N -0.44 -4.70 4.00 -66.32 -0.27 -4.97 15 18 C 0.52 3.75 6.64 59.84 0.40 4.15 15 19 F -0.17 -1.68 17.36 2.25 0.04 -1.64 15 20 F -0.18 -1.34 17.02 2.25 0.04 -1.30 15 21 C 0.02 0.16 11.12 -16.68 -0.19 -0.02 15 22 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 23 H 0.10 1.63 8.14 -51.91 -0.42 1.21 15 24 H 0.10 1.65 8.14 -51.92 -0.42 1.23 15 25 H 0.41 3.34 8.83 -40.82 -0.36 2.98 15 26 H 0.22 3.34 5.92 -52.49 -0.31 3.03 15 27 H 0.15 0.44 8.14 -51.93 -0.42 0.02 15 28 H 0.18 1.04 8.06 -52.49 -0.42 0.62 15 LS Contribution 279.05 15.07 4.21 4.21 Total: -1.00 -34.24 279.05 -3.66 -37.90 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -1.94 Total: 0.63 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -0.20 Total: -0.24 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.84 Total: -41.16 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.66 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.72 Total: 16.53 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -1.99 Total: -5.27 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.24 -3.66 -37.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345177926.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.752 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds