Wall clock time and date at job start Mon Mar 30 2020 01:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48493 * 109.46782 * 269.99904 * 3 2 1 5 5 H 1.48503 * 109.46800 * 29.99587 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99598 * 3 2 1 7 7 C 1.38802 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99838 * 359.97438 * 7 2 1 9 9 S 1.76202 * 119.99989 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00066 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21303 * 119.99816 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.40765 * 119.99854 * 179.72930 * 13 11 10 15 15 C 1.40256 * 126.07665 * 359.67851 * 14 13 11 16 16 N 1.30835 * 108.33208 * 179.85777 * 15 14 13 17 17 N 1.40069 * 108.36885 * 0.40885 * 16 15 14 18 18 C 1.46494 * 126.05463 * 179.70509 * 17 16 15 19 19 F 1.39898 * 109.47536 * 30.04021 * 18 17 16 20 20 F 1.39903 * 109.47544 * 150.04493 * 18 17 16 21 21 C 1.35755 * 126.08137 * 179.97438 * 14 13 11 22 22 H 0.97003 * 119.99714 * 0.02562 * 1 2 3 23 23 H 1.09009 * 109.46810 * 59.99567 * 10 9 7 24 24 H 1.08998 * 109.46824 * 300.00077 * 10 9 7 25 25 H 0.97001 * 120.00485 * 359.71840 * 13 11 10 26 26 H 1.07995 * 125.83761 * 0.03378 * 15 14 13 27 27 H 1.09002 * 109.47090 * 270.04209 * 18 17 16 28 28 H 1.07992 * 126.21724 * 359.94059 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5731 -3.2325 0.0026 12 8 6.3442 -2.2961 0.0014 13 7 6.0456 -4.4947 -0.0021 14 6 7.4341 -4.7264 -0.0078 15 6 8.4353 -3.7442 -0.0155 16 7 9.5988 -4.3426 -0.0158 17 7 9.3833 -5.7266 -0.0179 18 6 10.4210 -6.7607 -0.0250 19 9 11.5604 -6.2826 0.6309 20 9 9.9478 -7.9008 0.6333 21 6 8.0421 -5.9402 -0.0124 22 1 -0.4850 0.8401 -0.0004 23 1 3.6439 -3.4322 -0.8874 24 1 3.6433 -3.4309 0.8926 25 1 5.4290 -5.2435 -0.0014 26 1 8.2735 -2.6764 -0.0176 27 1 10.6740 -7.0143 -1.0545 28 1 7.5489 -6.9009 -0.0115 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345177926.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:04 Heat of formation + Delta-G solvation = -68.355731 kcal Electronic energy + Delta-G solvation = -18089.781202 eV Core-core repulsion = 14518.348637 eV Total energy + Delta-G solvation = -3571.432565 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.044 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.29614 -48.43089 -42.46894 -40.46464 -35.90880 -34.64730 -33.47145 -31.64427 -29.74506 -27.84038 -26.65536 -23.34641 -22.51495 -21.50907 -19.88069 -19.38699 -19.02887 -18.49296 -17.89052 -17.28214 -17.06143 -16.69198 -15.89788 -15.75790 -15.65045 -15.20830 -15.02918 -14.80612 -14.77917 -14.53241 -13.96473 -13.83564 -13.32046 -13.23321 -13.00365 -12.65259 -12.11247 -12.01074 -11.85818 -11.14928 -11.00857 -10.80321 -10.50894 -9.04043 -8.90800 -8.49424 -6.19616 0.43176 0.78019 1.02515 1.21191 1.33462 1.48598 1.56616 1.98049 2.12356 2.26736 2.60395 2.71884 2.89248 3.03478 3.57643 3.62819 3.86639 3.98022 4.26563 4.39327 4.40444 4.50297 4.99692 5.43578 5.70729 5.72982 6.14509 6.26696 6.45737 6.96147 7.11682 8.62667 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.060292 B = 0.003177 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.296999 B = 8811.387456 C = 9223.959269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.262 1.262 6 H -0.236 1.236 7 C -0.528 4.528 8 H 0.065 0.935 9 S -0.173 6.173 10 C -0.107 4.107 11 C 0.537 3.463 12 O -0.544 6.544 13 N -0.624 5.624 14 C -0.001 4.001 15 C 0.050 3.950 16 N -0.293 5.293 17 N -0.443 5.443 18 C 0.514 3.486 19 F -0.191 7.191 20 F -0.181 7.181 21 C 0.056 3.944 22 H 0.276 0.724 23 H 0.121 0.879 24 H 0.120 0.880 25 H 0.433 0.567 26 H 0.194 0.806 27 H 0.206 0.794 28 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.434 -18.595 -1.738 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.159 1.159 7 C -0.675 4.675 8 H 0.083 0.917 9 S 0.054 5.946 10 C -0.258 4.258 11 C 0.324 3.676 12 O -0.420 6.420 13 N -0.272 5.272 14 C -0.105 4.105 15 C -0.138 4.138 16 N -0.114 5.114 17 N -0.238 5.238 18 C 0.382 3.618 19 F -0.172 7.172 20 F -0.163 7.163 21 C -0.089 4.089 22 H 0.085 0.915 23 H 0.139 0.861 24 H 0.138 0.862 25 H 0.272 0.728 26 H 0.210 0.790 27 H 0.222 0.778 28 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 20.883 -16.961 -1.697 26.957 hybrid contribution -2.354 -0.581 0.284 2.442 sum 18.529 -17.542 -1.413 25.555 Atomic orbital electron populations 1.70015 1.07295 1.28942 1.49225 1.25542 0.95236 1.02205 0.93000 0.85891 0.80739 0.79751 0.80151 1.18775 1.18634 1.15941 1.22472 0.90279 0.96722 1.58063 0.91652 1.84759 1.06385 1.05878 1.97608 1.23202 0.94500 0.99927 1.08157 1.20072 0.89912 0.82448 0.75167 1.90596 1.58708 1.43632 1.49079 1.42526 1.03846 1.08241 1.72636 1.17941 0.84854 0.93154 1.14531 1.24638 0.88437 1.01786 0.98981 1.77481 1.23057 0.86347 1.24487 1.49942 1.06272 1.05959 1.61622 1.22057 0.72320 0.72101 0.95299 1.93098 1.50818 1.88662 1.84650 1.93131 1.88646 1.49746 1.84748 1.22418 0.82793 0.99753 1.03909 0.91452 0.86054 0.86175 0.72799 0.78957 0.77767 0.75348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.88 13.97 21.65 0.30 -54.58 15 2 C 0.05 2.62 5.50 84.86 0.47 3.09 15 3 Si 0.91 44.16 27.74 68.60 1.90 46.06 15 4 H -0.26 -12.45 7.11 99.48 0.71 -11.74 15 5 H -0.26 -11.99 7.11 99.48 0.71 -11.28 15 6 H -0.24 -11.34 6.74 99.48 0.67 -10.67 15 7 C -0.53 -29.68 10.04 67.95 0.68 -28.99 15 8 H 0.07 3.85 8.03 -2.91 -0.02 3.83 15 9 S -0.17 -8.30 18.55 -56.49 -1.05 -9.34 15 10 C -0.11 -3.62 6.16 71.24 0.44 -3.18 15 11 C 0.54 16.69 7.82 87.66 0.69 17.38 15 12 O -0.54 -21.11 13.02 -3.10 -0.04 -21.15 15 13 N -0.62 -13.27 5.47 -304.04 -1.66 -14.93 15 14 C 0.00 -0.01 6.90 37.62 0.26 0.25 15 15 C 0.05 1.43 10.84 85.33 0.92 2.35 15 16 N -0.29 -7.77 12.40 -56.77 -0.70 -8.48 15 17 N -0.44 -8.03 4.00 -363.73 -1.45 -9.48 15 18 C 0.51 5.55 6.64 127.77 0.85 6.40 15 19 F -0.19 -3.26 17.36 44.97 0.78 -2.48 15 20 F -0.18 -1.92 17.02 44.97 0.77 -1.15 15 21 C 0.06 0.85 11.12 83.50 0.93 1.77 15 22 H 0.28 15.33 8.31 -92.71 -0.77 14.56 15 23 H 0.12 3.65 8.14 -2.39 -0.02 3.63 15 24 H 0.12 3.66 8.14 -2.40 -0.02 3.64 15 25 H 0.43 5.43 8.83 -92.71 -0.82 4.61 15 26 H 0.19 6.31 5.92 -2.91 -0.02 6.29 15 27 H 0.21 0.18 8.14 -2.39 -0.02 0.16 15 28 H 0.23 1.20 8.06 -2.91 -0.02 1.18 15 Total: -1.00 -76.71 279.05 4.45 -72.26 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 0.37 Total: 4.22 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.23 Total: -0.94 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -3.52 Total: -87.47 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.04 Total: -21.15 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 1.55 Total: -3.63 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.06 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.05 Total: -9.34 kcal Total: -76.71 4.45 -72.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345177926.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.906 kcal (2) G-P(sol) polarization free energy of solvation -76.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds