Wall clock time and date at job start Mon Mar 30 2020 01:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99864 * 2 1 4 4 H 1.48505 * 109.47061 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47440 * 300.00181 * 3 2 1 6 6 H 1.48500 * 109.47150 * 60.00618 * 3 2 1 7 7 C 1.37880 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00163 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99963 * 359.71930 * 7 2 1 10 10 O 1.42108 * 106.40282 * 305.01921 * 9 7 2 11 11 O 1.42106 * 106.40374 * 77.93393 * 9 7 2 12 12 N 1.65593 * 107.22025 * 191.47546 * 9 7 2 13 13 C 1.39674 * 120.00158 * 298.45134 * 12 9 7 14 14 C 1.38931 * 120.07345 * 313.56259 * 13 12 9 15 15 C 1.38086 * 119.92286 * 179.74508 * 14 13 12 16 16 C 1.38315 * 120.07039 * 0.53360 * 15 14 13 17 17 C 1.38260 * 120.15355 * 359.74670 * 16 15 14 18 18 C 1.50694 * 119.96440 * 180.02562 * 17 16 15 19 19 F 1.39900 * 109.47786 * 119.97371 * 18 17 16 20 20 F 1.39904 * 109.47209 * 239.97635 * 18 17 16 21 21 C 1.38127 * 120.07574 * 359.97271 * 17 16 15 22 22 H 0.97003 * 119.99961 * 359.97438 * 1 2 3 23 23 H 0.97005 * 120.00207 * 118.44920 * 12 9 7 24 24 H 1.07996 * 120.03731 * 0.02562 * 14 13 12 25 25 H 1.07996 * 119.96487 * 180.25574 * 15 14 13 26 26 H 1.08000 * 119.92007 * 179.76629 * 16 15 14 27 27 H 1.09001 * 109.47143 * 359.97214 * 18 17 16 28 28 H 1.08001 * 120.03735 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1237 -2.7200 0.0063 10 8 0.2503 -2.6741 1.1263 11 8 0.6706 -2.9277 -1.3245 12 7 2.2223 -3.9189 0.3187 13 6 3.2846 -4.1393 -0.5610 14 6 3.0545 -4.1966 -1.9299 15 6 4.1079 -4.4094 -2.7971 16 6 5.3891 -4.5763 -2.3035 17 6 5.6207 -4.5257 -0.9414 18 6 7.0184 -4.7075 -0.4082 19 9 7.4000 -3.5632 0.3003 20 9 7.0517 -5.8164 0.4441 21 6 4.5725 -4.3074 -0.0687 22 1 -0.4850 0.8401 0.0004 23 1 2.1282 -4.4682 1.1126 24 1 2.0537 -4.0704 -2.3156 25 1 3.9304 -4.4499 -3.8616 26 1 6.2105 -4.7464 -2.9837 27 1 7.7061 -4.8669 -1.2387 28 1 4.7541 -4.2675 0.9952 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386475731.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:52 Heat of formation + Delta-G solvation = -195.397143 kcal Electronic energy + Delta-G solvation = -19314.568181 eV Core-core repulsion = 15705.333935 eV Total energy + Delta-G solvation = -3609.234245 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.89090 -47.89597 -40.47464 -37.54793 -36.30234 -36.09100 -35.21540 -32.70719 -30.24939 -28.32731 -27.00910 -23.54706 -22.81586 -21.13291 -19.59911 -18.98649 -18.41081 -18.13309 -18.09584 -17.18683 -17.11460 -16.67667 -16.11834 -15.65797 -15.62823 -14.85991 -14.72728 -14.28403 -14.06222 -13.94473 -13.91160 -13.42795 -13.22597 -13.06374 -12.74936 -12.62590 -12.43098 -12.33242 -12.28385 -12.02631 -11.37466 -11.30141 -10.98250 -10.04369 -9.37675 -8.79913 -7.55085 -0.01511 0.17449 0.46009 1.30188 1.31704 1.49622 2.16446 2.50740 2.61908 2.74232 2.85349 3.32202 3.51711 3.74802 3.93462 4.15569 4.19641 4.27255 4.33093 4.45796 4.65125 4.88192 5.04484 5.21643 5.32456 5.41387 5.49951 5.80669 5.89657 6.23001 6.72144 8.15453 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.019990 B = 0.006454 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.391192 B = 4337.110523 C = 4917.285800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.074 3.926 3 Si 0.989 3.011 4 H -0.252 1.252 5 H -0.254 1.254 6 H -0.257 1.257 7 C -1.033 5.033 8 H 0.112 0.888 9 S 2.713 3.287 10 O -1.027 7.027 11 O -1.028 7.028 12 N -1.065 6.065 13 C 0.142 3.858 14 C -0.156 4.156 15 C -0.098 4.098 16 C -0.088 4.088 17 C -0.164 4.164 18 C 0.314 3.686 19 F -0.215 7.215 20 F -0.212 7.212 21 C -0.117 4.117 22 H 0.301 0.699 23 H 0.424 0.576 24 H 0.135 0.865 25 H 0.164 0.836 26 H 0.182 0.818 27 H 0.174 0.826 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.310 -7.742 -4.878 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.178 1.178 6 H -0.181 1.181 7 C -1.167 5.167 8 H 0.131 0.869 9 S 2.816 3.184 10 O -1.018 7.018 11 O -1.017 7.017 12 N -0.814 5.814 13 C 0.045 3.955 14 C -0.177 4.177 15 C -0.116 4.116 16 C -0.106 4.106 17 C -0.166 4.166 18 C 0.261 3.739 19 F -0.197 7.197 20 F -0.193 7.193 21 C -0.139 4.139 22 H 0.111 0.889 23 H 0.261 0.739 24 H 0.152 0.848 25 H 0.182 0.818 26 H 0.199 0.801 27 H 0.191 0.809 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.134 -7.730 -5.071 16.889 hybrid contribution 0.003 0.853 1.042 1.347 sum 14.137 -6.877 -4.029 16.229 Atomic orbital electron populations 1.69998 1.08542 1.32395 1.40783 1.25956 0.95397 1.05112 0.87502 0.85121 0.79319 0.75194 0.79706 1.17554 1.17845 1.18120 1.30733 1.06748 1.12110 1.67121 0.86935 1.00318 0.72219 0.73726 0.72154 1.93336 1.65745 1.87879 1.54811 1.93289 1.80850 1.87164 1.40423 1.53383 1.41951 1.51266 1.34800 1.17595 0.87431 1.00746 0.89689 1.22171 1.02721 1.00244 0.92582 1.21394 0.91489 0.97712 1.00983 1.21384 0.98313 0.97612 0.93336 1.20507 0.94535 1.05989 0.95569 1.20906 0.94337 0.71059 0.87589 1.92997 1.92314 1.52460 1.81909 1.92986 1.97483 1.54202 1.74662 1.21063 0.90873 1.01078 1.00840 0.88912 0.73933 0.84756 0.81833 0.80094 0.80931 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.23 12.84 21.45 0.28 -51.96 15 2 C 0.07 4.11 5.45 84.66 0.46 4.57 15 3 Si 0.99 41.38 29.54 68.60 2.03 43.41 15 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 15 5 H -0.25 -9.93 7.11 99.48 0.71 -9.23 15 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 7 C -1.03 -57.32 9.61 67.73 0.65 -56.67 15 8 H 0.11 5.85 7.81 -2.91 -0.02 5.83 15 9 S 2.71 145.67 5.05 -56.49 -0.29 145.38 15 10 O -1.03 -61.58 17.58 -128.00 -2.25 -63.83 15 11 O -1.03 -58.66 15.16 -128.00 -1.94 -60.60 15 12 N -1.07 -44.08 5.77 -51.37 -0.30 -44.38 15 13 C 0.14 5.29 6.13 38.22 0.23 5.53 15 14 C -0.16 -5.59 9.23 22.40 0.21 -5.39 15 15 C -0.10 -2.46 10.04 22.25 0.22 -2.24 15 16 C -0.09 -1.74 9.67 22.29 0.22 -1.52 15 17 C -0.16 -4.00 5.37 -19.89 -0.11 -4.10 15 18 C 0.31 5.98 5.45 71.23 0.39 6.37 15 19 F -0.22 -5.36 17.26 44.97 0.78 -4.58 15 20 F -0.21 -4.80 17.26 44.97 0.78 -4.02 15 21 C -0.12 -3.69 9.52 22.40 0.21 -3.48 15 22 H 0.30 15.80 8.31 -92.71 -0.77 15.03 15 23 H 0.42 14.97 8.96 -96.74 -0.87 14.11 15 24 H 0.13 5.55 5.72 -2.91 -0.02 5.54 15 25 H 0.16 3.00 8.06 -2.91 -0.02 2.98 15 26 H 0.18 1.63 7.94 -2.91 -0.02 1.61 15 27 H 0.17 1.41 7.87 -2.39 -0.02 1.40 15 28 H 0.13 3.94 8.06 -2.91 -0.02 3.92 15 Total: -1.00 -77.06 274.97 1.92 -75.14 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.36 Total: 22.37 kcal Atomic # 6 Polarization: -59.42 SS G_CDS: 2.49 Total: -56.93 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -0.02 Total: -96.33 kcal Atomic # 8 Polarization: -120.24 SS G_CDS: -4.19 Total: -124.43 kcal Atomic # 9 Polarization: -10.15 SS G_CDS: 1.55 Total: -8.60 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 145.67 SS G_CDS: -0.29 Total: 145.38 kcal Total: -77.06 1.92 -75.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386475731.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.257 kcal (2) G-P(sol) polarization free energy of solvation -77.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds