Wall clock time and date at job start Mon Mar 30 2020 01:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47064 * 240.00278 * 3 2 1 5 5 H 1.48503 * 109.46816 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46749 * 119.99886 * 3 2 1 7 7 C 1.37875 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00247 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99816 * 180.02562 * 10 9 7 12 12 O 1.21776 * 119.99966 * 359.97438 * 11 10 9 13 13 C 1.41717 * 119.99910 * 179.97438 * 11 10 9 14 14 S 1.75819 * 125.47339 * 359.96946 * 13 11 10 15 15 C 1.70578 * 91.66219 * 180.02562 * 14 13 11 16 16 C 1.33617 * 111.14234 * 0.02562 * 15 14 13 17 17 C 1.37271 * 125.47925 * 180.02562 * 13 11 10 18 18 O 1.35788 * 123.46693 * 359.96896 * 17 13 11 19 19 C 1.42895 * 116.99688 * 179.97438 * 18 17 13 20 20 F 1.39897 * 109.47766 * 300.00850 * 19 18 17 21 21 F 1.39901 * 109.47056 * 60.01134 * 19 18 17 22 22 H 0.96990 * 119.99834 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46696 * 60.00545 * 9 7 2 24 24 H 1.09007 * 109.47053 * 300.00787 * 9 7 2 25 25 H 0.96996 * 119.99977 * 359.97438 * 10 9 7 26 26 H 1.07997 * 124.42930 * 179.73702 * 15 14 13 27 27 H 1.08000 * 122.45393 * 179.97438 * 16 15 14 28 28 H 1.09004 * 109.47103 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7539 -4.8834 -0.0011 12 8 0.5566 -5.1059 -0.0011 13 6 2.6748 -5.9606 -0.0016 14 16 4.4262 -5.8056 -0.0024 15 6 4.6257 -7.4997 -0.0035 16 6 3.4444 -8.1241 -0.0037 17 6 2.3429 -7.2925 -0.0027 18 8 1.0627 -7.7452 -0.0027 19 6 0.8757 -9.1619 -0.0045 20 9 1.4681 -9.7092 -1.1475 21 9 1.4687 -9.7120 1.1370 22 1 -0.4849 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.1568 -3.4354 -0.0009 26 1 5.5818 -8.0019 -0.0083 27 1 3.3579 -9.2006 -0.0048 28 1 -0.1907 -9.3876 -0.0048 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427628817.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:21 Heat of formation + Delta-G solvation = -148.932797 kcal Electronic energy + Delta-G solvation = -18844.826084 eV Core-core repulsion = 15237.606684 eV Total energy + Delta-G solvation = -3607.219400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.43967 -47.47080 -40.01415 -38.37967 -36.10120 -34.15165 -32.35030 -30.16201 -27.45055 -26.07755 -24.63062 -22.80732 -20.74995 -20.32322 -18.68535 -18.35381 -18.04550 -17.05702 -16.39463 -15.80721 -15.11232 -15.07639 -14.81145 -14.34980 -14.32236 -14.09060 -13.88577 -13.73462 -13.33162 -12.88942 -12.46803 -12.20196 -11.98451 -11.86244 -11.71855 -11.12374 -10.96970 -10.86311 -10.30218 -9.39876 -9.21919 -8.88095 -8.71581 -8.30652 -7.85002 -6.14872 -4.21908 0.49328 1.35620 1.68041 2.26251 2.72793 3.26849 3.31404 3.32998 3.35417 3.85963 4.09615 4.17487 4.38595 4.50944 4.62792 5.01699 5.21120 5.31102 5.61069 5.66945 5.99483 6.74419 7.32301 7.41272 7.53818 7.66884 7.97878 8.59183 8.77941 9.05844 9.44189 10.95357 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.032216 B = 0.004288 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.921796 B = 6528.816428 C = 7217.943882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.709 5.709 11 C 0.571 3.429 12 O -0.534 6.534 13 C -0.280 4.280 14 S 0.245 5.755 15 C -0.213 4.213 16 C -0.199 4.199 17 C 0.151 3.849 18 O -0.273 6.273 19 C 0.406 3.594 20 F -0.201 7.201 21 F -0.201 7.201 22 H 0.267 0.733 23 H 0.030 0.970 24 H 0.030 0.970 25 H 0.386 0.614 26 H 0.175 0.825 27 H 0.150 0.850 28 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.519 -18.183 -0.016 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.358 5.358 11 C 0.357 3.643 12 O -0.414 6.414 13 C -0.401 4.401 14 S 0.511 5.489 15 C -0.351 4.351 16 C -0.232 4.232 17 C 0.092 3.908 18 O -0.189 6.189 19 C 0.316 3.684 20 F -0.183 7.183 21 F -0.183 7.183 22 H 0.076 0.924 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.219 0.781 26 H 0.192 0.808 27 H 0.168 0.832 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.327 -16.857 -0.015 18.802 hybrid contribution 0.176 -0.686 0.000 0.708 sum 8.503 -17.543 -0.015 19.495 Atomic orbital electron populations 1.69966 1.06097 1.27422 1.48759 1.24944 0.94918 0.99413 0.94668 0.86469 0.79421 0.82278 0.78714 1.20029 1.21070 1.20036 1.21182 0.93240 0.90421 1.53428 0.91929 1.19138 0.88185 0.81634 0.97972 1.46408 1.10793 1.05982 1.72592 1.15640 0.87528 0.82334 0.78812 1.90832 1.15179 1.84498 1.50908 1.23324 0.98445 0.95831 1.22474 1.83164 0.97130 1.01147 1.67498 1.25004 1.02647 1.00315 1.07125 1.20135 0.91268 1.01635 1.10211 1.18056 0.83558 0.91377 0.97764 1.86905 1.23749 1.20792 1.87446 1.23590 0.96213 0.77007 0.71630 1.93089 1.87152 1.85985 1.52110 1.93090 1.87125 1.85888 1.52232 0.92376 0.95245 0.95253 0.78126 0.80801 0.83239 0.80007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 15 2 C 0.06 1.79 5.46 -17.82 -0.10 1.70 15 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 15 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 15 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 15 9 C 0.25 6.81 5.43 -5.19 -0.03 6.79 15 10 N -0.71 -15.87 5.54 -64.37 -0.36 -16.23 15 11 C 0.57 12.61 7.59 -14.93 -0.11 12.50 15 12 O -0.53 -13.73 15.84 -12.40 -0.20 -13.93 15 13 C -0.28 -4.92 6.28 -38.61 -0.24 -5.16 15 14 S 0.25 3.04 22.00 -107.50 -2.37 0.68 15 15 C -0.21 -2.27 10.90 29.11 0.32 -1.95 15 16 C -0.20 -2.52 8.41 -41.28 -0.35 -2.87 15 17 C 0.15 2.43 6.46 -40.02 -0.26 2.17 15 18 O -0.27 -4.37 9.30 -36.59 -0.34 -4.71 15 19 C 0.41 4.35 5.98 101.05 0.60 4.95 15 20 F -0.20 -2.25 15.84 2.25 0.04 -2.22 15 21 F -0.20 -2.25 15.84 2.25 0.04 -2.22 15 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 23 H 0.03 0.88 8.14 -51.93 -0.42 0.45 15 24 H 0.03 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.39 7.48 7.29 -40.82 -0.30 7.18 15 26 H 0.17 1.23 8.06 -52.49 -0.42 0.81 15 27 H 0.15 1.67 5.88 -52.49 -0.31 1.36 15 28 H 0.18 1.12 8.14 -51.93 -0.42 0.70 15 LS Contribution 275.84 15.07 4.16 4.16 Total: -1.00 -34.11 275.84 -5.63 -39.74 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -1.83 Total: 1.44 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -0.49 Total: 2.87 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.38 Total: -41.69 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.54 Total: -18.64 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.07 Total: -4.43 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.37 Total: 0.68 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -34.11 -5.63 -39.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427628817.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.196 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds