Wall clock time and date at job start Mon Mar 30 2020 01:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47064 * 240.00278 * 3 2 1 5 5 H 1.48503 * 109.46816 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46749 * 119.99886 * 3 2 1 7 7 C 1.37875 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00247 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99816 * 180.02562 * 10 9 7 12 12 O 1.21776 * 119.99966 * 359.97438 * 11 10 9 13 13 C 1.41717 * 119.99910 * 179.97438 * 11 10 9 14 14 S 1.75819 * 125.47339 * 359.96946 * 13 11 10 15 15 C 1.70578 * 91.66219 * 180.02562 * 14 13 11 16 16 C 1.33617 * 111.14234 * 0.02562 * 15 14 13 17 17 C 1.37271 * 125.47925 * 180.02562 * 13 11 10 18 18 O 1.35788 * 123.46693 * 359.96896 * 17 13 11 19 19 C 1.42895 * 116.99688 * 179.97438 * 18 17 13 20 20 F 1.39897 * 109.47766 * 300.00850 * 19 18 17 21 21 F 1.39901 * 109.47056 * 60.01134 * 19 18 17 22 22 H 0.96990 * 119.99834 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46696 * 60.00545 * 9 7 2 24 24 H 1.09007 * 109.47053 * 300.00787 * 9 7 2 25 25 H 0.96996 * 119.99977 * 359.97438 * 10 9 7 26 26 H 1.07997 * 124.42930 * 179.73702 * 15 14 13 27 27 H 1.08000 * 122.45393 * 179.97438 * 16 15 14 28 28 H 1.09004 * 109.47103 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7539 -4.8834 -0.0011 12 8 0.5566 -5.1059 -0.0011 13 6 2.6748 -5.9606 -0.0016 14 16 4.4262 -5.8056 -0.0024 15 6 4.6257 -7.4997 -0.0035 16 6 3.4444 -8.1241 -0.0037 17 6 2.3429 -7.2925 -0.0027 18 8 1.0627 -7.7452 -0.0027 19 6 0.8757 -9.1619 -0.0045 20 9 1.4681 -9.7092 -1.1475 21 9 1.4687 -9.7120 1.1370 22 1 -0.4849 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.1568 -3.4354 -0.0009 26 1 5.5818 -8.0019 -0.0083 27 1 3.3579 -9.2006 -0.0048 28 1 -0.1907 -9.3876 -0.0048 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427628817.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:21 Heat of formation + Delta-G solvation = -173.943555 kcal Electronic energy + Delta-G solvation = -18845.910632 eV Core-core repulsion = 15237.606684 eV Total energy + Delta-G solvation = -3608.303948 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.30943 -48.33772 -41.29806 -39.96647 -37.18419 -36.15191 -34.40066 -31.51120 -29.25523 -27.23933 -25.78290 -24.63983 -22.34663 -21.44925 -20.25964 -19.29041 -18.94921 -18.39788 -17.97791 -17.24562 -16.65847 -16.51669 -16.45286 -15.57400 -15.56746 -15.23438 -15.01047 -14.68362 -14.66195 -14.38789 -14.03696 -13.96202 -13.37042 -13.11958 -13.00528 -12.76624 -12.67118 -12.23272 -12.12465 -11.51941 -11.02791 -10.79905 -10.14799 -9.75166 -9.33174 -8.28760 -6.46216 -0.64160 0.28212 0.70542 1.17775 1.43839 1.48657 1.56731 1.77762 2.21948 2.31957 2.47447 2.57142 3.05846 3.40692 3.65631 3.70549 3.95580 4.14180 4.47133 4.73260 4.88271 5.11566 5.21735 5.43014 5.62363 5.70957 5.82427 6.61947 6.79909 7.20636 7.37235 8.83479 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.032216 B = 0.004288 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.921796 B = 6528.816428 C = 7217.943882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.707 5.707 11 C 0.572 3.428 12 O -0.587 6.587 13 C -0.350 4.350 14 S 0.295 5.705 15 C -0.172 4.172 16 C -0.220 4.220 17 C 0.159 3.841 18 O -0.308 6.308 19 C 0.405 3.595 20 F -0.203 7.203 21 F -0.203 7.203 22 H 0.270 0.730 23 H -0.010 1.010 24 H -0.010 1.010 25 H 0.402 0.598 26 H 0.224 0.776 27 H 0.167 0.833 28 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.789 -19.015 -0.019 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.597 4.597 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.357 5.357 11 C 0.362 3.638 12 O -0.471 6.471 13 C -0.470 4.470 14 S 0.560 5.440 15 C -0.310 4.310 16 C -0.252 4.252 17 C 0.098 3.902 18 O -0.225 6.225 19 C 0.316 3.684 20 F -0.185 7.185 21 F -0.185 7.185 22 H 0.078 0.922 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.237 0.763 26 H 0.240 0.760 27 H 0.184 0.816 28 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 11.644 -17.723 -0.019 21.206 hybrid contribution -0.803 -0.614 0.001 1.011 sum 10.842 -18.337 -0.018 21.303 Atomic orbital electron populations 1.70138 1.08310 1.28721 1.49679 1.26090 0.95808 1.03933 0.93664 0.85180 0.77922 0.76346 0.79616 1.18504 1.21004 1.18516 1.21564 0.94308 0.90425 1.53405 0.89786 1.18585 0.88527 0.83916 0.94330 1.46096 1.10814 1.05356 1.73397 1.16193 0.87759 0.82917 0.76938 1.90776 1.17777 1.85304 1.53198 1.22991 1.01154 0.94870 1.27986 1.82911 0.92418 1.02236 1.66389 1.25640 1.03926 0.99406 1.02006 1.20235 0.90722 1.02172 1.12055 1.18557 0.84579 0.91518 0.95508 1.86881 1.24451 1.23991 1.87141 1.24285 0.98068 0.74857 0.71232 1.93079 1.87417 1.85722 1.52263 1.93080 1.87391 1.85624 1.52386 0.92159 0.99188 0.99198 0.76274 0.75980 0.81576 0.75680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.60 15 2 C 0.00 0.27 5.46 84.65 0.46 0.73 15 3 Si 0.99 42.59 29.54 68.60 2.03 44.61 15 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 15 7 C -0.56 -31.24 9.28 25.60 0.24 -31.01 15 8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 15 9 C 0.27 15.49 5.43 85.63 0.46 15.95 15 10 N -0.71 -33.02 5.54 -475.75 -2.63 -35.65 15 11 C 0.57 26.59 7.59 85.10 0.65 27.24 15 12 O -0.59 -32.38 15.84 12.16 0.19 -32.19 15 13 C -0.35 -12.37 6.28 22.90 0.14 -12.22 15 14 S 0.29 6.58 22.00 -56.49 -1.24 5.34 15 15 C -0.17 -2.91 10.90 66.77 0.73 -2.18 15 16 C -0.22 -4.97 8.41 21.17 0.18 -4.79 15 17 C 0.16 5.04 6.46 21.99 0.14 5.18 15 18 O -0.31 -9.98 9.30 -74.43 -0.69 -10.67 15 19 C 0.40 8.18 5.98 113.37 0.68 8.86 15 20 F -0.20 -4.22 15.84 44.97 0.71 -3.51 15 21 F -0.20 -4.22 15.84 44.97 0.71 -3.51 15 22 H 0.27 15.36 8.31 -92.72 -0.77 14.59 15 23 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 15 24 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 15 25 H 0.40 15.75 7.29 -92.71 -0.68 15.07 15 26 H 0.22 1.62 8.06 -2.91 -0.02 1.60 15 27 H 0.17 3.18 5.88 -2.91 -0.02 3.16 15 28 H 0.23 2.38 8.14 -2.38 -0.02 2.36 15 Total: -1.00 -79.57 275.84 3.59 -75.98 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.55 Total: 8.43 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 3.68 Total: 7.76 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -2.35 Total: -92.25 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.50 Total: -42.86 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 1.42 Total: -7.01 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: 6.58 SS G_CDS: -1.24 Total: 5.34 kcal Total: -79.57 3.59 -75.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427628817.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.964 kcal (2) G-P(sol) polarization free energy of solvation -79.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds