Wall clock time and date at job start Mon Mar 30 2020 01:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47425 * 2 1 4 4 C 1.50699 * 109.46628 * 120.00215 * 2 1 3 5 5 H 1.08007 * 120.00174 * 120.00461 * 4 2 1 6 6 C 1.37876 * 120.00302 * 299.99515 * 4 2 1 7 7 N 1.31518 * 119.99644 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00535 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46832 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47028 * 119.99982 * 8 6 4 11 11 H 1.48494 * 109.47314 * 240.00483 * 8 6 4 12 12 O 1.45196 * 109.46993 * 239.99597 * 2 1 3 13 13 C 1.34760 * 116.99546 * 90.00371 * 12 2 1 14 14 O 1.21512 * 120.00116 * 359.97438 * 13 12 2 15 15 C 1.47420 * 119.99855 * 179.97438 * 13 12 2 16 16 C 1.40175 * 120.60009 * 359.97438 * 15 13 12 17 17 N 1.30596 * 121.17160 * 180.02562 * 16 15 13 18 18 C 1.34922 * 122.45353 * 359.97438 * 17 16 15 19 19 C 1.40595 * 128.45353 * 179.97438 * 18 17 16 20 20 C 1.32290 * 115.91443 * 180.02562 * 19 18 17 21 21 S 1.75506 * 110.83638 * 0.02562 * 20 19 18 22 22 C 1.40108 * 119.27773 * 0.02562 * 18 17 16 23 23 C 1.39344 * 119.76308 * 359.97438 * 22 18 17 24 24 H 1.09003 * 109.47134 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47538 * 300.00064 * 1 2 3 26 26 H 1.09001 * 109.46917 * 60.00265 * 1 2 3 27 27 H 0.97006 * 119.99934 * 179.97438 * 7 6 4 28 28 H 1.08004 * 119.41220 * 0.02562 * 16 15 13 29 29 H 1.08005 * 122.04064 * 0.02562 * 19 18 17 30 30 H 1.08007 * 124.58472 * 180.02562 * 20 19 18 31 31 H 1.07997 * 120.73627 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1481 -2.2858 3.6038 10 1 3.1471 -0.1859 4.8161 11 1 1.1675 -1.5867 4.8164 12 8 2.0140 -0.6846 -1.1855 13 6 2.2179 0.0669 -2.2854 14 8 1.9970 1.2614 -2.2547 15 6 2.7092 -0.5602 -3.5258 16 6 2.9687 -1.9368 -3.5751 17 7 3.4046 -2.5038 -4.6678 18 6 3.6292 -1.8105 -5.8033 19 6 4.0942 -2.2874 -7.0414 20 6 4.2264 -1.3821 -7.9970 21 16 3.7661 0.2092 -7.4173 22 6 3.3899 -0.4301 -5.8219 23 6 2.9244 0.2068 -4.6733 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7081 1.1609 3.4844 28 1 2.8053 -2.5393 -2.6937 29 1 4.3290 -3.3292 -7.2026 30 1 4.5710 -1.5937 -8.9985 31 1 2.7351 1.2700 -4.6700 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744134542.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:53 Heat of formation + Delta-G solvation = -31.902950 kcal Electronic energy + Delta-G solvation = -18110.751899 eV Core-core repulsion = 15062.836823 eV Total energy + Delta-G solvation = -3047.915075 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66997 -39.26772 -36.06974 -35.64993 -33.30908 -32.61687 -30.43285 -29.34519 -25.45692 -25.25884 -23.99253 -22.30668 -21.21046 -20.02254 -18.42195 -17.16809 -16.90219 -16.42957 -16.00856 -15.56580 -15.26768 -14.59781 -14.46368 -14.27401 -13.58535 -13.13747 -12.83686 -12.78825 -12.33290 -12.05101 -11.81258 -11.36009 -11.28006 -11.11897 -10.88726 -10.61186 -10.40465 -10.32927 -10.09085 -9.64570 -9.47904 -8.96290 -8.92068 -8.53186 -8.24825 -6.21999 -4.29097 -0.00321 0.92214 1.11659 1.58218 1.72082 3.00187 3.22519 3.28048 3.32417 3.44786 3.77799 3.92720 4.30141 4.42303 4.74843 4.81150 4.99445 5.06955 5.11783 5.44398 5.50057 5.66229 5.84561 6.01379 6.34274 6.57754 6.84320 6.85113 7.05119 7.53420 7.65665 7.67460 7.85767 8.07779 8.49297 8.81163 9.36512 10.85531 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.040237 B = 0.003686 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.707294 B = 7594.058768 C = 8016.116197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.049 0.951 4 C -0.521 4.521 5 H 0.071 0.929 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.347 6.347 13 C 0.504 3.496 14 O -0.512 6.512 15 C -0.152 4.152 16 C 0.181 3.819 17 N -0.466 5.466 18 C 0.144 3.856 19 C -0.118 4.118 20 C -0.168 4.168 21 S 0.117 5.883 22 C -0.214 4.214 23 C 0.027 3.973 24 H 0.038 0.962 25 H 0.101 0.899 26 H 0.016 0.984 27 H 0.266 0.734 28 H 0.184 0.816 29 H 0.155 0.845 30 H 0.177 0.823 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 -3.704 -19.093 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.559 4.559 5 H 0.089 0.911 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.263 6.263 13 C 0.347 3.653 14 O -0.403 6.403 15 C -0.159 4.159 16 C 0.010 3.990 17 N -0.175 5.175 18 C 0.011 3.989 19 C -0.148 4.148 20 C -0.305 4.305 21 S 0.380 5.620 22 C -0.331 4.331 23 C -0.003 4.003 24 H 0.058 0.942 25 H 0.119 0.881 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.201 0.799 29 H 0.172 0.828 30 H 0.195 0.805 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.090 -2.731 -19.691 20.521 hybrid contribution 0.059 -0.685 1.514 1.663 sum 5.149 -3.416 -18.176 19.198 Atomic orbital electron populations 1.22181 0.97353 1.00303 1.01525 1.20738 0.91514 0.94026 0.77333 0.93338 1.21057 1.32584 1.13586 0.88714 0.91065 1.24890 0.94883 0.95085 0.99109 1.69909 1.36012 1.22569 1.24167 0.86202 0.78645 0.79504 0.81704 1.19395 1.20753 1.20690 1.86544 1.75674 1.43092 1.20987 1.20513 0.75228 0.85201 0.84388 1.90796 1.48717 1.16063 1.84709 1.20363 1.06214 0.95857 0.93454 1.23249 0.88916 0.91369 0.95479 1.67717 1.12918 1.38698 0.98146 1.19337 0.97290 0.88517 0.93790 1.19656 1.02928 1.01931 0.90313 1.25413 1.05427 0.95895 1.03741 1.84290 1.67863 1.08383 1.01442 1.23465 1.10918 0.98642 1.00093 1.20999 0.90053 1.00755 0.88443 0.94245 0.88095 0.96462 0.92393 0.79897 0.82785 0.80534 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 9.33 37.16 0.35 -3.54 16 2 C 0.22 5.68 2.56 -27.88 -0.07 5.61 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.03 16 4 C -0.52 -14.34 8.90 -34.44 -0.31 -14.64 16 5 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.91 11.32 55.43 0.63 -24.28 16 8 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 O -0.35 -7.99 9.14 -40.65 -0.37 -8.36 16 13 C 0.50 10.50 7.87 34.47 0.27 10.77 16 14 O -0.51 -11.86 15.67 -19.27 -0.30 -12.16 16 15 C -0.15 -2.55 5.89 -104.89 -0.62 -3.16 16 16 C 0.18 2.79 10.77 -17.35 -0.19 2.60 16 17 N -0.47 -6.97 10.39 -10.99 -0.11 -7.08 16 18 C 0.14 1.93 6.96 -84.92 -0.59 1.34 16 19 C -0.12 -1.17 10.15 -40.62 -0.41 -1.58 16 20 C -0.17 -1.32 11.08 28.81 0.32 -1.00 16 21 S 0.12 1.12 23.29 -107.50 -2.50 -1.39 16 22 C -0.21 -2.80 6.49 -38.47 -0.25 -3.05 16 23 C 0.03 0.39 9.73 -38.63 -0.38 0.02 16 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.10 2.69 6.07 -51.93 -0.32 2.37 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.18 2.64 7.61 -52.48 -0.40 2.24 16 29 H 0.15 1.24 8.06 -52.48 -0.42 0.81 16 30 H 0.18 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.15 2.10 7.72 -52.49 -0.41 1.70 16 LS Contribution 292.79 15.07 4.41 4.41 Total: -1.00 -30.53 292.79 -7.97 -38.50 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -2.73 Total: -0.37 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.97 Total: -5.04 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.51 Total: -31.36 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.67 Total: -20.53 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.50 Total: -1.39 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.53 -7.97 -38.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744134542.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.596 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds