Wall clock time and date at job start Mon Mar 30 2020 01:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47425 * 2 1 4 4 C 1.50699 * 109.46628 * 120.00215 * 2 1 3 5 5 H 1.08007 * 120.00174 * 120.00461 * 4 2 1 6 6 C 1.37876 * 120.00302 * 299.99515 * 4 2 1 7 7 N 1.31518 * 119.99644 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00535 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46832 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47028 * 119.99982 * 8 6 4 11 11 H 1.48494 * 109.47314 * 240.00483 * 8 6 4 12 12 O 1.45196 * 109.46993 * 239.99597 * 2 1 3 13 13 C 1.34760 * 116.99546 * 90.00371 * 12 2 1 14 14 O 1.21512 * 120.00116 * 359.97438 * 13 12 2 15 15 C 1.47420 * 119.99855 * 179.97438 * 13 12 2 16 16 C 1.40175 * 120.60009 * 359.97438 * 15 13 12 17 17 N 1.30596 * 121.17160 * 180.02562 * 16 15 13 18 18 C 1.34922 * 122.45353 * 359.97438 * 17 16 15 19 19 C 1.40595 * 128.45353 * 179.97438 * 18 17 16 20 20 C 1.32290 * 115.91443 * 180.02562 * 19 18 17 21 21 S 1.75506 * 110.83638 * 0.02562 * 20 19 18 22 22 C 1.40108 * 119.27773 * 0.02562 * 18 17 16 23 23 C 1.39344 * 119.76308 * 359.97438 * 22 18 17 24 24 H 1.09003 * 109.47134 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47538 * 300.00064 * 1 2 3 26 26 H 1.09001 * 109.46917 * 60.00265 * 1 2 3 27 27 H 0.97006 * 119.99934 * 179.97438 * 7 6 4 28 28 H 1.08004 * 119.41220 * 0.02562 * 16 15 13 29 29 H 1.08005 * 122.04064 * 0.02562 * 19 18 17 30 30 H 1.08007 * 124.58472 * 180.02562 * 20 19 18 31 31 H 1.07997 * 120.73627 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1481 -2.2858 3.6038 10 1 3.1471 -0.1859 4.8161 11 1 1.1675 -1.5867 4.8164 12 8 2.0140 -0.6846 -1.1855 13 6 2.2179 0.0669 -2.2854 14 8 1.9970 1.2614 -2.2547 15 6 2.7092 -0.5602 -3.5258 16 6 2.9687 -1.9368 -3.5751 17 7 3.4046 -2.5038 -4.6678 18 6 3.6292 -1.8105 -5.8033 19 6 4.0942 -2.2874 -7.0414 20 6 4.2264 -1.3821 -7.9970 21 16 3.7661 0.2092 -7.4173 22 6 3.3899 -0.4301 -5.8219 23 6 2.9244 0.2068 -4.6733 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7081 1.1609 3.4844 28 1 2.8053 -2.5393 -2.6937 29 1 4.3290 -3.3292 -7.2026 30 1 4.5710 -1.5937 -8.9985 31 1 2.7351 1.2700 -4.6700 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744134542.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:53 Heat of formation + Delta-G solvation = -49.657333 kcal Electronic energy + Delta-G solvation = -18111.521787 eV Core-core repulsion = 15062.836823 eV Total energy + Delta-G solvation = -3048.684963 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.90964 -40.83106 -37.72580 -36.77643 -35.33961 -33.77830 -31.97933 -30.90043 -27.46996 -26.51582 -25.12864 -23.75765 -22.50824 -21.56935 -19.77243 -18.81204 -18.25168 -17.81825 -17.30062 -17.08593 -16.92322 -16.38472 -15.62441 -15.16816 -14.99539 -14.46186 -14.28798 -14.08889 -13.93138 -13.65401 -13.25851 -13.03113 -12.83178 -12.79834 -12.40432 -12.15322 -12.12480 -11.74191 -11.70629 -11.62907 -11.00706 -10.69077 -10.60075 -9.94451 -9.07680 -8.29119 -6.45703 -1.07351 -0.18716 0.24397 0.74168 0.79503 1.43245 1.43966 1.57243 1.60674 1.81963 2.40164 2.56587 2.95203 3.02186 3.42875 3.56043 3.67173 3.85840 4.09019 4.32618 4.51628 4.61351 4.73466 4.77991 4.82756 4.90640 5.03755 5.10790 5.26413 5.47291 5.59920 5.85624 6.01491 6.54108 6.58733 6.82957 7.25378 8.79007 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.040237 B = 0.003686 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.707294 B = 7594.058768 C = 8016.116197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.218 3.782 3 H 0.011 0.989 4 C -0.547 4.547 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.984 3.016 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.272 1.272 12 O -0.350 6.350 13 C 0.505 3.495 14 O -0.544 6.544 15 C -0.181 4.181 16 C 0.183 3.817 17 N -0.480 5.480 18 C 0.142 3.858 19 C -0.144 4.144 20 C -0.130 4.130 21 S 0.157 5.843 22 C -0.240 4.240 23 C 0.036 3.964 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.023 0.977 27 H 0.271 0.729 28 H 0.184 0.816 29 H 0.175 0.825 30 H 0.224 0.776 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -4.916 -21.416 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.029 0.971 4 C -0.584 4.584 5 H 0.089 0.911 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.807 3.193 9 H -0.186 1.186 10 H -0.202 1.202 11 H -0.197 1.197 12 O -0.266 6.266 13 C 0.351 3.649 14 O -0.437 6.437 15 C -0.187 4.187 16 C 0.011 3.989 17 N -0.189 5.189 18 C 0.007 3.993 19 C -0.173 4.173 20 C -0.267 4.267 21 S 0.420 5.580 22 C -0.357 4.357 23 C 0.007 3.993 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.201 0.799 29 H 0.193 0.807 30 H 0.241 0.759 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.279 -3.940 -22.046 23.259 hybrid contribution -0.234 -0.251 1.927 1.957 sum 6.045 -4.191 -20.119 21.422 Atomic orbital electron populations 1.22009 0.96562 1.00644 1.00931 1.20456 0.92155 0.92268 0.78648 0.97083 1.21329 1.33422 1.13994 0.89704 0.91105 1.25824 0.94696 0.95656 1.02125 1.70024 1.36582 1.23682 1.25212 0.85119 0.78334 0.78426 0.77439 1.18635 1.20222 1.19678 1.86525 1.76079 1.42977 1.21023 1.21168 0.74150 0.84890 0.84727 1.90762 1.50412 1.17358 1.85187 1.20020 1.09803 0.96662 0.92256 1.23187 0.88961 0.90729 0.96020 1.67743 1.13604 1.38976 0.98567 1.19981 0.96154 0.88795 0.94358 1.19860 1.04626 1.03623 0.89231 1.26034 1.01533 0.94159 1.04928 1.84293 1.66493 1.08957 0.98214 1.23725 1.11264 0.99113 1.01556 1.21066 0.88982 1.00781 0.88475 0.93289 0.89868 0.95759 0.91962 0.79874 0.80734 0.75941 0.82620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.42 9.33 71.98 0.67 -6.75 16 2 C 0.22 11.98 2.56 29.85 0.08 12.06 16 3 H 0.01 0.70 7.16 -2.39 -0.02 0.68 16 4 C -0.55 -30.89 8.90 25.60 0.23 -30.66 16 5 H 0.07 3.90 7.81 -2.91 -0.02 3.88 16 6 C 0.02 0.92 5.30 84.65 0.45 1.36 16 7 N -0.92 -52.47 11.32 21.45 0.24 -52.23 16 8 Si 0.98 42.72 29.54 68.60 2.03 44.75 16 9 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 10 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 O -0.35 -16.93 9.14 -56.71 -0.52 -17.45 16 13 C 0.51 22.19 7.87 70.24 0.55 22.75 16 14 O -0.54 -26.68 15.67 19.80 0.31 -26.37 16 15 C -0.18 -6.28 5.89 -20.04 -0.12 -6.40 16 16 C 0.18 5.79 10.77 85.35 0.92 6.71 16 17 N -0.48 -14.17 10.39 -188.69 -1.96 -16.13 16 18 C 0.14 3.55 6.96 39.70 0.28 3.83 16 19 C -0.14 -2.35 10.15 21.78 0.22 -2.13 16 20 C -0.13 -1.39 11.08 66.76 0.74 -0.65 16 21 S 0.16 2.44 23.29 -56.49 -1.32 1.13 16 22 C -0.24 -5.92 6.49 22.99 0.15 -5.77 16 23 C 0.04 1.06 9.73 22.89 0.22 1.28 16 24 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.08 4.59 6.07 -2.39 -0.01 4.58 16 26 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 28 H 0.18 5.56 7.61 -2.91 -0.02 5.54 16 29 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 30 H 0.22 0.36 8.06 -2.91 -0.02 0.34 16 31 H 0.16 4.38 7.72 -2.91 -0.02 4.35 16 Total: -1.00 -68.34 292.79 4.34 -64.00 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 1.17 Total: 6.68 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 4.39 Total: -4.38 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -1.72 Total: -68.36 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -0.21 Total: -43.82 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.32 Total: 1.13 kcal Total: -68.34 4.34 -64.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744134542.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.341 kcal (2) G-P(sol) polarization free energy of solvation -68.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds