Wall clock time and date at job start Mon Mar 30 2020 01:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48507 * 109.46816 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46981 * 299.99696 * 3 2 1 6 6 H 1.48496 * 109.46976 * 59.99804 * 3 2 1 7 7 C 1.37885 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00125 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99784 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46958 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.47007 * 180.02562 * 10 9 7 12 12 C 1.34757 * 116.99923 * 180.02562 * 11 10 9 13 13 O 1.21513 * 119.99879 * 359.97438 * 12 11 10 14 14 C 1.47423 * 119.99778 * 179.97438 * 12 11 10 15 15 C 1.40173 * 120.59965 * 359.97438 * 14 12 11 16 16 N 1.30594 * 121.16777 * 179.97438 * 15 14 12 17 17 C 1.34914 * 122.45335 * 0.02562 * 16 15 14 18 18 C 1.40604 * 128.44896 * 179.97438 * 17 16 15 19 19 C 1.32298 * 115.91184 * 180.02562 * 18 17 16 20 20 S 1.75508 * 110.83531 * 359.97438 * 19 18 17 21 21 C 1.40106 * 119.28596 * 359.97438 * 17 16 15 22 22 C 1.39343 * 119.75299 * 359.97438 * 21 17 16 23 23 H 0.96995 * 119.99693 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47376 * 59.99629 * 9 7 2 25 25 H 1.09002 * 109.46733 * 299.99991 * 9 7 2 26 26 H 1.08993 * 109.47685 * 59.99445 * 10 9 7 27 27 H 1.09002 * 109.47086 * 299.99401 * 10 9 7 28 28 H 1.08008 * 119.41247 * 0.25706 * 15 14 12 29 29 H 1.07996 * 122.04544 * 359.97438 * 18 17 16 30 30 H 1.08003 * 124.58362 * 179.97438 * 19 18 17 31 31 H 1.08013 * 120.73375 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 8 1.5192 -4.9196 0.0012 12 6 2.2532 -6.0498 0.0027 13 8 3.4666 -5.9862 0.0041 14 6 1.5838 -7.3633 0.0028 15 6 0.1849 -7.4512 0.0018 16 7 -0.4196 -8.6089 0.0014 17 6 0.2545 -9.7776 0.0023 18 6 -0.2625 -11.0851 0.0025 19 6 0.6315 -12.0603 0.0040 20 16 2.2625 -11.4120 0.0048 21 6 1.6555 -9.7607 0.0033 22 6 2.3324 -8.5427 0.0028 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5572 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8713 -3.6040 0.8921 27 1 2.8726 -3.6048 -0.8878 28 1 -0.4035 -6.5455 -0.0032 29 1 -1.3245 -11.2813 0.0022 30 1 0.3904 -13.1130 0.0048 31 1 3.4120 -8.5112 0.0031 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745405573.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:08 Heat of formation + Delta-G solvation = -36.928263 kcal Electronic energy + Delta-G solvation = -17567.129142 eV Core-core repulsion = 14518.996153 eV Total energy + Delta-G solvation = -3048.132989 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.88717 -39.63490 -36.34552 -35.91477 -33.37956 -32.80984 -30.78651 -29.89464 -25.85167 -24.82067 -23.98692 -22.18017 -21.12474 -20.64810 -18.73940 -17.30692 -17.06726 -16.36069 -16.20829 -16.07725 -15.79703 -14.79440 -14.55996 -14.44934 -13.75929 -13.35817 -13.22807 -12.98232 -12.74396 -12.38578 -12.02796 -11.48072 -11.31008 -11.09912 -10.83517 -10.79733 -10.76595 -10.49226 -9.75981 -9.72117 -9.64474 -9.31260 -9.09289 -8.46733 -8.37973 -6.12560 -4.16988 -0.18280 0.76310 0.98306 1.45545 1.54892 2.68786 2.94745 3.26586 3.34261 3.38953 3.55262 3.78166 4.26688 4.36836 4.54755 4.66694 4.76928 4.84892 5.24329 5.24624 5.32647 5.50092 5.67035 5.78420 6.01127 6.03784 6.17796 6.58022 6.81141 7.50158 7.53196 7.58858 7.82618 8.04258 8.20852 8.88695 9.47664 10.98939 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.052778 B = 0.002950 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.394052 B = 9489.526743 C = 9999.476050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.348 6.348 12 C 0.509 3.491 13 O -0.510 6.510 14 C -0.160 4.160 15 C 0.183 3.817 16 N -0.464 5.464 17 C 0.150 3.850 18 C -0.119 4.119 19 C -0.165 4.165 20 S 0.122 5.878 21 C -0.217 4.217 22 C 0.032 3.968 23 H 0.263 0.737 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.185 0.815 29 H 0.156 0.844 30 H 0.179 0.821 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 -24.378 0.003 24.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.264 6.264 12 C 0.353 3.647 13 O -0.400 6.400 14 C -0.166 4.166 15 C 0.011 3.989 16 N -0.173 5.173 17 C 0.016 3.984 18 C -0.150 4.150 19 C -0.302 4.302 20 S 0.385 5.615 21 C -0.334 4.334 22 C 0.003 3.997 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.202 0.798 29 H 0.174 0.826 30 H 0.196 0.804 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.715 -25.024 0.004 25.083 hybrid contribution 0.088 1.653 0.000 1.655 sum 1.803 -23.371 0.004 23.441 Atomic orbital electron populations 1.69978 1.06083 1.26936 1.49742 1.24984 0.94919 0.99405 0.94838 0.86416 0.80048 0.83143 0.77720 1.19592 1.20817 1.20821 1.21002 0.93221 0.90037 1.52221 0.92177 1.19195 0.94196 0.88900 0.99043 1.23745 0.96493 0.78140 1.01230 1.86573 1.41859 1.15539 1.82469 1.20582 0.85530 0.85146 0.73473 1.90824 1.14849 1.88285 1.46074 1.20203 0.95567 0.91591 1.09278 1.23267 0.90850 0.95854 0.88891 1.67728 1.39524 0.96856 1.13150 1.19367 0.88305 0.93557 0.97194 1.19680 1.02072 0.89033 1.04183 1.25454 0.95656 1.03784 1.05262 1.84328 1.06223 0.94105 1.76848 1.23479 0.98272 0.99046 1.12621 1.20984 1.00994 0.88223 0.89531 0.92720 0.95190 0.95199 0.92012 0.92025 0.79807 0.82627 0.80397 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -14.58 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 10 C 0.08 1.64 5.41 37.16 0.20 1.84 16 11 O -0.35 -6.68 9.49 -40.65 -0.39 -7.07 16 12 C 0.51 8.85 7.90 34.47 0.27 9.12 16 13 O -0.51 -9.86 16.20 -19.28 -0.31 -10.17 16 14 C -0.16 -2.28 5.89 -104.89 -0.62 -2.90 16 15 C 0.18 2.48 10.77 -17.35 -0.19 2.29 16 16 N -0.46 -6.28 10.39 -10.99 -0.11 -6.40 16 17 C 0.15 1.79 6.96 -84.92 -0.59 1.20 16 18 C -0.12 -1.05 10.16 -40.62 -0.41 -1.46 16 19 C -0.16 -1.11 11.08 28.81 0.32 -0.79 16 20 S 0.12 1.00 23.29 -107.50 -2.50 -1.51 16 21 C -0.22 -2.48 6.49 -38.47 -0.25 -2.73 16 22 C 0.03 0.40 9.73 -38.63 -0.38 0.02 16 23 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.19 2.31 7.61 -52.48 -0.40 1.91 16 29 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.18 0.59 8.06 -52.48 -0.42 0.16 16 31 H 0.15 1.75 7.72 -52.48 -0.41 1.35 16 LS Contribution 297.88 15.07 4.49 4.49 Total: -1.00 -31.33 297.88 -8.19 -39.52 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: -2.88 Total: -3.51 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.20 Total: -6.24 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.62 Total: -31.72 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.70 Total: -17.24 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.50 Total: -1.51 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.33 -8.19 -39.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745405573.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.595 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds