Wall clock time and date at job start Mon Mar 30 2020 01:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48502 * 109.46972 * 240.00015 * 3 2 1 5 5 H 1.48502 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47336 * 119.99513 * 3 2 1 7 7 C 1.37874 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 F 1.39901 * 109.46780 * 324.72121 * 14 12 11 16 16 F 1.39903 * 109.47402 * 84.71629 * 14 12 11 17 17 C 1.50696 * 109.47465 * 204.72040 * 14 12 11 18 18 N 1.29025 * 124.91560 * 299.69256 * 17 14 12 19 19 C 1.31790 * 117.12381 * 179.80710 * 18 17 14 20 20 C 1.33642 * 114.49900 * 0.48126 * 19 18 17 21 21 S 1.70977 * 124.91528 * 119.99613 * 17 14 12 22 22 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 24 24 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 25 25 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 26 26 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 27 27 H 1.07999 * 122.74604 * 180.22476 * 19 18 17 28 28 H 1.07997 * 126.03885 * 179.71615 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5192 -4.9195 0.0012 12 6 2.2503 -6.0453 0.0027 13 8 3.4569 -5.9820 0.0041 14 6 1.5662 -7.3880 -0.0040 15 9 0.3909 -7.3163 0.7515 16 9 1.2535 -7.7455 -1.3199 17 6 2.4847 -8.4228 0.5929 18 7 3.6473 -8.7345 0.1280 19 6 4.3245 -9.6614 0.7754 20 6 3.6941 -10.1664 1.8401 21 16 2.1342 -9.3590 1.9800 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6240 -2.5566 0.8903 25 1 2.8712 -3.6039 0.8922 26 1 2.8725 -3.6047 -0.8878 27 1 5.3066 -9.9891 0.4681 28 1 4.0735 -10.9340 2.4982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755592177.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:23 Heat of formation + Delta-G solvation = -126.391464 kcal Electronic energy + Delta-G solvation = -18778.567292 eV Core-core repulsion = 15172.325357 eV Total energy + Delta-G solvation = -3606.241935 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.55807 -47.58096 -40.41340 -39.81638 -36.52859 -33.42107 -31.91857 -30.46233 -28.51520 -25.72893 -24.54696 -22.18283 -20.98642 -20.43367 -19.33323 -18.43506 -17.85584 -17.15390 -16.64295 -16.02884 -15.92172 -15.39280 -14.71765 -14.69043 -14.38688 -14.24408 -13.86631 -13.76927 -13.37400 -13.11993 -12.54771 -12.39727 -11.89046 -11.38209 -11.16152 -10.85212 -10.82875 -10.57523 -10.09468 -9.92277 -9.80731 -9.72548 -9.47719 -9.36381 -8.47521 -6.13239 -4.18541 0.05957 0.71191 1.21763 1.83811 2.13527 2.42597 2.90861 3.28678 3.32868 3.35432 3.64273 4.16727 4.33860 4.54263 4.67120 4.77046 5.01037 5.23209 5.63594 5.84306 5.94751 6.48723 6.56957 7.21325 7.42366 7.55463 7.66065 7.87886 8.17313 8.86274 9.45998 10.98041 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.003730 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.662297 B = 7505.147197 C = 7740.063297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.073 3.927 11 O -0.334 6.334 12 C 0.432 3.568 13 O -0.450 6.450 14 C 0.408 3.592 15 F -0.158 7.158 16 F -0.152 7.152 17 C -0.045 4.045 18 N -0.408 5.408 19 C 0.039 3.961 20 C -0.243 4.243 21 S 0.209 5.791 22 H 0.265 0.735 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.187 0.813 28 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.238 -21.541 4.328 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.001 3.999 11 O -0.249 6.249 12 C 0.267 3.733 13 O -0.335 6.335 14 C 0.366 3.634 15 F -0.138 7.138 16 F -0.133 7.133 17 C -0.323 4.323 18 N -0.122 5.122 19 C -0.114 4.114 20 C -0.383 4.383 21 S 0.463 5.537 22 H 0.074 0.926 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.204 0.796 28 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 3.735 -21.126 4.515 21.924 hybrid contribution 1.315 0.588 -0.381 1.490 sum 5.050 -20.539 4.134 21.551 Atomic orbital electron populations 1.69961 1.06089 1.27217 1.49338 1.24981 0.94943 0.99410 0.94758 0.86504 0.79464 0.82368 0.78792 1.20035 1.21070 1.20056 1.20898 0.93144 0.89912 1.52768 0.92219 1.19210 0.94153 0.88618 0.99271 1.23940 0.96757 0.77616 1.01585 1.86611 1.41807 1.15236 1.81247 1.23023 0.87043 0.86862 0.76347 1.90756 1.14066 1.86820 1.41866 1.17963 0.80318 0.89149 0.75933 1.93160 1.48559 1.96729 1.75399 1.93175 1.93024 1.92384 1.34714 1.26590 0.98304 1.05415 1.01980 1.65997 1.03475 1.12374 1.30350 1.21922 1.01957 0.94380 0.93120 1.27535 0.98402 1.07778 1.04581 1.84122 1.15893 1.29172 1.24505 0.92557 0.95024 0.95048 0.91632 0.91538 0.79646 0.79437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 15 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 7 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 15 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 15 9 C 0.02 0.64 5.35 -27.89 -0.15 0.49 15 10 C 0.07 1.61 5.40 37.15 0.20 1.81 15 11 O -0.33 -6.85 10.06 -39.26 -0.39 -7.25 15 12 C 0.43 8.05 7.33 36.00 0.26 8.32 15 13 O -0.45 -9.06 15.44 -18.76 -0.29 -9.35 15 14 C 0.41 6.41 2.47 -29.04 -0.07 6.34 15 15 F -0.16 -2.32 16.35 2.25 0.04 -2.28 15 16 F -0.15 -2.40 17.03 2.25 0.04 -2.36 15 17 C -0.05 -0.63 6.06 -13.46 -0.08 -0.71 15 18 N -0.41 -5.77 9.76 -11.86 -0.12 -5.89 15 19 C 0.04 0.38 11.35 -19.18 -0.22 0.17 15 20 C -0.24 -1.86 11.37 29.12 0.33 -1.53 15 21 S 0.21 2.03 22.58 -107.50 -2.43 -0.40 15 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 23 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.07 1.40 8.13 -51.93 -0.42 0.98 15 26 H 0.07 1.44 8.13 -51.93 -0.42 1.01 15 27 H 0.19 1.27 8.06 -52.49 -0.42 0.84 15 28 H 0.19 0.72 8.06 -52.49 -0.42 0.29 15 LS Contribution 283.98 15.07 4.28 4.28 Total: -1.00 -31.57 283.98 -5.37 -36.94 By element: Atomic # 1 Polarization: -3.92 SS G_CDS: -2.08 Total: -6.00 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.14 Total: 1.47 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.62 Total: -31.30 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.68 Total: -16.59 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.08 Total: -4.64 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.43 Total: -0.40 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.57 -5.37 -36.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755592177.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.451 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds