Wall clock time and date at job start Mon Mar 30 2020 01:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48502 * 109.46972 * 240.00015 * 3 2 1 5 5 H 1.48502 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47336 * 119.99513 * 3 2 1 7 7 C 1.37874 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 F 1.39901 * 109.46780 * 324.72121 * 14 12 11 16 16 F 1.39903 * 109.47402 * 84.71629 * 14 12 11 17 17 C 1.50696 * 109.47465 * 204.72040 * 14 12 11 18 18 N 1.29025 * 124.91560 * 299.69256 * 17 14 12 19 19 C 1.31790 * 117.12381 * 179.80710 * 18 17 14 20 20 C 1.33642 * 114.49900 * 0.48126 * 19 18 17 21 21 S 1.70977 * 124.91528 * 119.99613 * 17 14 12 22 22 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 24 24 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 25 25 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 26 26 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 27 27 H 1.07999 * 122.74604 * 180.22476 * 19 18 17 28 28 H 1.07997 * 126.03885 * 179.71615 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5192 -4.9195 0.0012 12 6 2.2503 -6.0453 0.0027 13 8 3.4569 -5.9820 0.0041 14 6 1.5662 -7.3880 -0.0040 15 9 0.3909 -7.3163 0.7515 16 9 1.2535 -7.7455 -1.3199 17 6 2.4847 -8.4228 0.5929 18 7 3.6473 -8.7345 0.1280 19 6 4.3245 -9.6614 0.7754 20 6 3.6941 -10.1664 1.8401 21 16 2.1342 -9.3590 1.9800 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6240 -2.5566 0.8903 25 1 2.8712 -3.6039 0.8922 26 1 2.8725 -3.6047 -0.8878 27 1 5.3066 -9.9891 0.4681 28 1 4.0735 -10.9340 2.4982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755592177.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:23 Heat of formation + Delta-G solvation = -146.140273 kcal Electronic energy + Delta-G solvation = -18779.423664 eV Core-core repulsion = 15172.325357 eV Total energy + Delta-G solvation = -3607.098307 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.77197 -48.79561 -41.84601 -40.78848 -38.14930 -35.51369 -32.94672 -32.37176 -29.60076 -27.35879 -25.92971 -23.57930 -22.78192 -21.48566 -20.43848 -19.74102 -19.06682 -18.67001 -18.15402 -17.60196 -17.50191 -16.60291 -16.15106 -15.81682 -15.65215 -15.51648 -15.10504 -15.06733 -14.54788 -14.47136 -14.40148 -13.88781 -13.28738 -13.14280 -12.66357 -12.65368 -12.58192 -12.16696 -11.69819 -11.65893 -11.47673 -10.94198 -10.66788 -10.62499 -10.25133 -8.28027 -6.42030 -0.75985 -0.11844 0.35489 0.50529 0.83886 1.41946 1.45048 1.53365 1.59155 1.83275 2.30963 2.42936 3.04464 3.06465 3.19375 3.67144 4.06192 4.11665 4.26812 4.35960 4.58001 4.88319 4.98832 5.34209 5.40663 5.67256 6.00119 6.11191 6.43620 6.70862 7.27797 8.84306 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.003730 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.662297 B = 7505.147197 C = 7740.063297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.068 0.932 9 C 0.030 3.970 10 C 0.087 3.913 11 O -0.345 6.345 12 C 0.430 3.570 13 O -0.465 6.465 14 C 0.415 3.585 15 F -0.154 7.154 16 F -0.157 7.157 17 C -0.096 4.096 18 N -0.441 5.441 19 C 0.014 3.986 20 C -0.206 4.206 21 S 0.250 5.750 22 H 0.268 0.732 23 H 0.008 0.992 24 H 0.010 0.990 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.213 0.787 28 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.728 -22.786 5.485 24.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.193 4.193 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.086 0.914 9 C -0.008 4.008 10 C 0.014 3.986 11 O -0.261 6.261 12 C 0.267 3.733 13 O -0.350 6.350 14 C 0.374 3.626 15 F -0.135 7.135 16 F -0.138 7.138 17 C -0.371 4.371 18 N -0.158 5.158 19 C -0.138 4.138 20 C -0.345 4.345 21 S 0.503 5.497 22 H 0.077 0.923 23 H 0.026 0.974 24 H 0.029 0.971 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.229 0.771 28 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.222 -22.386 5.665 23.675 hybrid contribution 0.858 0.814 -0.676 1.362 sum 6.080 -21.572 4.990 22.961 Atomic orbital electron populations 1.70091 1.07844 1.28425 1.50080 1.25981 0.95860 1.03472 0.94005 0.85349 0.78151 0.77309 0.79331 1.19089 1.20515 1.18936 1.21308 0.93788 0.90908 1.52892 0.91377 1.19019 0.94361 0.90311 0.97065 1.23509 0.95431 0.77543 1.02084 1.86586 1.42157 1.15538 1.81807 1.23666 0.87100 0.87236 0.75334 1.90728 1.14777 1.87153 1.42345 1.17777 0.80742 0.88025 0.76104 1.93159 1.48388 1.96689 1.75231 1.93159 1.93108 1.92211 1.35288 1.26218 0.98867 1.07233 1.04765 1.65947 1.04013 1.13775 1.32030 1.22371 1.03088 0.94331 0.93965 1.28125 0.96456 1.06561 1.03377 1.83948 1.16712 1.27580 1.21473 0.92276 0.97368 0.97134 0.90873 0.91188 0.77098 0.74887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 13.29 21.45 0.28 -55.11 15 2 C 0.01 0.35 5.46 84.65 0.46 0.81 15 3 Si 0.98 43.38 29.54 68.60 2.03 45.41 15 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 7 C -0.55 -31.05 9.11 25.60 0.23 -30.81 15 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 15 9 C 0.03 1.59 5.35 29.85 0.16 1.75 15 10 C 0.09 3.90 5.40 71.98 0.39 4.29 15 11 O -0.35 -14.56 10.06 -51.41 -0.52 -15.07 15 12 C 0.43 16.32 7.33 71.23 0.52 16.85 15 13 O -0.46 -18.91 15.44 21.94 0.34 -18.57 15 14 C 0.42 13.16 2.47 29.10 0.07 13.23 15 15 F -0.15 -4.54 16.35 44.97 0.74 -3.81 15 16 F -0.16 -5.05 17.03 44.97 0.77 -4.29 15 17 C -0.10 -2.61 6.06 88.52 0.54 -2.07 15 18 N -0.44 -12.10 9.76 -191.44 -1.87 -13.97 15 19 C 0.01 0.24 11.35 83.66 0.95 1.19 15 20 C -0.21 -2.33 11.37 66.78 0.76 -1.57 15 21 S 0.25 4.25 22.58 -56.49 -1.28 2.98 15 22 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 23 H 0.01 0.46 8.14 -2.39 -0.02 0.44 15 24 H 0.01 0.59 8.14 -2.39 -0.02 0.57 15 25 H 0.07 3.16 8.13 -2.39 -0.02 3.14 15 26 H 0.07 3.07 8.13 -2.38 -0.02 3.06 15 27 H 0.21 2.27 8.06 -2.91 -0.02 2.25 15 28 H 0.23 0.38 8.06 -2.91 -0.02 0.35 15 Total: -1.00 -69.56 283.98 5.78 -63.78 By element: Atomic # 1 Polarization: -6.22 SS G_CDS: 1.20 Total: -5.01 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 4.08 Total: 3.66 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -1.58 Total: -69.08 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.18 Total: -33.64 kcal Atomic # 9 Polarization: -9.59 SS G_CDS: 1.50 Total: -8.09 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.28 Total: 2.98 kcal Total: -69.56 5.78 -63.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755592177.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.357 kcal (2) G-P(sol) polarization free energy of solvation -69.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds