Wall clock time and date at job start Mon Mar 30 2020 01:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52105 * 115.19350 * 2 1 4 4 C 1.51720 * 112.46043 * 229.71897 * 3 2 1 5 5 N 1.45305 * 111.99565 * 318.65756 * 4 3 2 6 6 C 1.34779 * 118.81711 * 235.64501 * 5 4 3 7 7 O 1.21685 * 120.00032 * 355.50762 * 6 5 4 8 8 C 1.46384 * 119.99530 * 175.50500 * 6 5 4 9 9 H 1.07995 * 119.99980 * 5.45532 * 8 6 5 10 10 C 1.40045 * 119.99372 * 185.45299 * 8 6 5 11 11 N 1.30674 * 120.00420 * 359.97438 * 10 8 6 12 12 Si 1.86802 * 119.99744 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47350 * 59.99998 * 12 10 8 14 14 H 1.48501 * 109.47232 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47262 * 299.99894 * 12 10 8 16 16 C 1.45528 * 122.36310 * 55.92646 * 5 4 3 17 17 C 1.51801 * 111.27476 * 320.08961 * 16 5 4 18 18 H 1.09006 * 114.17700 * 157.07956 * 17 16 5 19 19 C 1.52123 * 120.47327 * 302.02434 * 17 16 5 20 20 Cl 1.80303 * 117.54056 * 1.82831 * 19 17 16 21 21 Cl 1.80301 * 117.54282 * 216.55848 * 19 17 16 22 22 H 1.08996 * 109.47579 * 85.58486 * 1 2 3 23 23 H 1.09000 * 109.46840 * 205.58551 * 1 2 3 24 24 H 1.09002 * 109.47042 * 325.57840 * 1 2 3 25 25 H 1.08997 * 108.88400 * 108.95283 * 3 2 1 26 26 H 1.09000 * 108.80590 * 350.43493 * 3 2 1 27 27 H 1.09004 * 108.97176 * 198.01101 * 4 3 2 28 28 H 1.08995 * 108.97374 * 79.30933 * 4 3 2 29 29 H 0.97004 * 119.99869 * 179.97438 * 11 10 8 30 30 H 1.08994 * 109.11440 * 80.55230 * 16 5 4 31 31 H 1.09000 * 109.11707 * 199.62771 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1774 1.3764 0.0000 4 6 3.2445 1.5150 -1.0696 5 7 4.0697 0.3235 -1.1727 6 6 5.4059 0.4457 -1.0455 7 8 5.9078 1.5482 -0.9299 8 6 6.2534 -0.7479 -1.0464 9 1 5.8192 -1.7182 -1.2369 10 6 7.6271 -0.6314 -0.8003 11 7 8.1524 0.5428 -0.5703 12 14 8.7087 -2.1544 -0.8021 13 1 8.6370 -2.8110 -2.1321 14 1 10.1132 -1.7645 -0.5182 15 1 8.2359 -3.0985 0.2421 16 6 3.5058 -0.9962 -1.4144 17 6 2.2193 -1.1967 -0.6341 18 1 1.5594 -1.9586 -1.0493 19 6 2.2072 -1.0632 0.8812 20 17 3.7541 -0.6130 1.6908 21 17 1.1390 -2.1815 1.8082 22 1 -0.3634 0.0791 -1.0245 23 1 -0.3633 -0.9269 0.4438 24 1 -0.3633 0.8477 0.5809 25 1 2.6307 1.5530 0.9754 26 1 1.4063 2.1274 -0.1715 27 1 3.8803 2.3667 -0.8277 28 1 2.7620 1.6963 -2.0301 29 1 9.1039 0.6233 -0.3995 30 1 3.2987 -1.1064 -2.4788 31 1 4.2286 -1.7540 -1.1120 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803552387.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:30 Heat of formation + Delta-G solvation = -38.390593 kcal Electronic energy + Delta-G solvation = -18162.999923 eV Core-core repulsion = 15110.326966 eV Total energy + Delta-G solvation = -3052.672957 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 277.038 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.19568 -38.88074 -37.02887 -36.77983 -35.11314 -34.51985 -32.93009 -29.58051 -28.10713 -27.11783 -24.55616 -22.01519 -21.57503 -19.41528 -17.95107 -17.75841 -17.21120 -16.64463 -16.24418 -15.92329 -15.19688 -14.70924 -14.53107 -14.02536 -13.82353 -13.46665 -13.39765 -13.27940 -12.93279 -12.79521 -12.70862 -12.60830 -12.27813 -12.07317 -12.02420 -11.95449 -11.77922 -11.31342 -10.87938 -10.79802 -10.49820 -9.71880 -8.98941 -8.24124 -6.75263 0.31426 1.36937 1.39448 1.42147 1.52105 2.16294 2.25622 2.52708 2.87388 3.17205 3.39523 3.69657 3.85494 3.92227 4.17073 4.35237 4.51447 4.62580 4.78053 4.86522 4.88207 4.98228 5.01049 5.10499 5.23231 5.36640 5.43342 5.86191 6.22355 6.50910 6.94983 7.47494 8.54995 8.74057 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.023975 B = 0.007311 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.589904 B = 3828.773831 C = 4405.830989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.099 4.099 4 C 0.122 3.878 5 N -0.632 5.632 6 C 0.553 3.447 7 O -0.632 6.632 8 C -0.557 4.557 9 H 0.090 0.910 10 C 0.033 3.967 11 N -0.823 5.823 12 Si 0.980 3.020 13 H -0.251 1.251 14 H -0.278 1.278 15 H -0.258 1.258 16 C 0.144 3.856 17 C -0.109 4.109 18 H 0.158 0.842 19 C -0.016 4.016 20 Cl -0.103 7.103 21 Cl -0.098 7.098 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.111 0.889 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.270 0.730 30 H 0.079 0.921 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.379 -6.078 0.511 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.137 4.137 4 C -0.002 4.002 5 N -0.368 5.368 6 C 0.360 3.640 7 O -0.519 6.519 8 C -0.593 4.593 9 H 0.108 0.892 10 C -0.182 4.182 11 N -0.453 5.453 12 Si 0.800 3.200 13 H -0.175 1.175 14 H -0.203 1.203 15 H -0.182 1.182 16 C 0.021 3.979 17 C -0.128 4.128 18 H 0.176 0.824 19 C -0.068 4.068 20 Cl -0.076 7.076 21 Cl -0.071 7.071 22 H 0.110 0.890 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.129 0.871 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.958 -5.425 0.758 16.872 hybrid contribution 1.032 -0.447 0.503 1.232 sum -14.926 -5.873 1.261 16.089 Atomic orbital electron populations 1.21658 0.87585 1.04088 1.04348 1.22261 0.97481 0.90749 0.95972 1.21110 0.98208 0.94804 0.99616 1.20468 0.92311 0.89258 0.98118 1.47069 1.06181 1.06585 1.76917 1.18417 0.80737 0.89590 0.75292 1.90539 1.73905 1.30227 1.57254 1.21367 0.92805 0.93740 1.51400 0.89203 1.26830 1.00038 0.99654 0.91663 1.70183 1.12889 1.26558 1.35659 0.85331 0.76594 0.77813 0.80282 1.17496 1.20318 1.18210 1.20534 0.92854 0.86027 0.98514 1.23191 1.00095 1.00621 0.88940 0.82446 1.27509 0.87479 1.01846 0.89932 1.98804 1.33774 1.92466 1.82567 1.98693 1.66028 1.65247 1.77136 0.88992 0.90798 0.90321 0.92615 0.87069 0.92842 0.92082 0.91974 0.90349 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.45 71.98 0.68 -1.30 16 2 C -0.06 -1.55 2.59 -52.55 -0.14 -1.69 16 3 C -0.10 -2.87 5.28 29.88 0.16 -2.71 16 4 C 0.12 4.58 6.29 86.18 0.54 5.12 16 5 N -0.63 -27.19 1.95 -837.11 -1.63 -28.82 16 6 C 0.55 30.98 7.23 86.36 0.62 31.60 16 7 O -0.63 -41.73 14.24 -4.30 -0.06 -41.79 16 8 C -0.56 -30.57 8.73 24.83 0.22 -30.35 16 9 H 0.09 4.43 5.68 -2.91 -0.02 4.41 16 10 C 0.03 1.83 5.50 85.30 0.47 2.30 16 11 N -0.82 -50.54 11.84 21.83 0.26 -50.28 16 12 Si 0.98 41.29 29.56 68.60 2.03 43.31 16 13 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 14 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 16 C 0.14 4.89 5.69 86.17 0.49 5.38 16 17 C -0.11 -2.84 5.51 -11.82 -0.07 -2.91 16 18 H 0.16 3.02 8.14 -2.38 -0.02 3.00 16 19 C -0.02 -0.47 3.59 30.58 0.11 -0.36 16 20 Cl -0.10 -4.03 25.57 -2.72 -0.07 -4.10 16 21 Cl -0.10 -2.43 27.20 -2.72 -0.07 -2.51 16 22 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 23 H 0.07 1.20 6.08 -2.39 -0.01 1.19 16 24 H 0.08 1.16 8.00 -2.39 -0.02 1.14 16 25 H 0.06 1.89 6.86 -2.39 -0.02 1.87 16 26 H 0.11 2.41 7.77 -2.39 -0.02 2.39 16 27 H 0.05 2.42 6.75 -2.38 -0.02 2.40 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.27 15.26 8.29 -92.71 -0.77 14.49 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.09 3.29 5.29 -2.39 -0.01 3.28 16 Total: -1.00 -73.78 278.85 4.70 -69.08 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.16 Total: 10.03 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 3.09 Total: 5.08 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -1.38 Total: -79.11 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.06 Total: -41.79 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 17 Polarization: -6.46 SS G_CDS: -0.14 Total: -6.61 kcal Total: -73.78 4.70 -69.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803552387.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.688 kcal (2) G-P(sol) polarization free energy of solvation -73.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds