Wall clock time and date at job start Mon Mar 30 2020 01:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52095 * 115.19842 * 2 1 4 4 C 1.51710 * 112.46537 * 129.10591 * 3 2 1 5 5 N 1.45318 * 111.99658 * 41.33607 * 4 3 2 6 6 C 1.34775 * 118.81697 * 124.07603 * 5 4 3 7 7 O 1.21691 * 120.00081 * 175.11460 * 6 5 4 8 8 C 1.46372 * 120.00008 * 355.11362 * 6 5 4 9 9 H 1.08002 * 120.00257 * 21.27704 * 8 6 5 10 10 C 1.40055 * 119.99975 * 201.27209 * 8 6 5 11 11 N 1.30668 * 119.99702 * 6.88997 * 10 8 6 12 12 Si 1.86802 * 120.00038 * 186.88907 * 10 8 6 13 13 H 1.48498 * 109.46986 * 84.99197 * 12 10 8 14 14 H 1.48499 * 109.46912 * 204.99466 * 12 10 8 15 15 H 1.48505 * 109.46922 * 324.99382 * 12 10 8 16 16 C 1.45518 * 122.36396 * 304.10303 * 5 4 3 17 17 C 1.50484 * 111.06366 * 40.09084 * 16 5 4 18 18 H 1.09001 * 113.22756 * 202.80583 * 17 16 5 19 19 C 1.52125 * 121.31951 * 58.07372 * 17 16 5 20 20 Cl 1.80299 * 117.54546 * 142.91718 * 19 17 16 21 21 Cl 1.80304 * 117.53877 * 357.72385 * 19 17 16 22 22 H 1.08998 * 109.47487 * 149.87211 * 1 2 3 23 23 H 1.09008 * 109.46964 * 269.87470 * 1 2 3 24 24 H 1.09006 * 109.46648 * 29.86809 * 1 2 3 25 25 H 1.09003 * 108.88280 * 249.87385 * 3 2 1 26 26 H 1.08997 * 108.88437 * 8.33125 * 3 2 1 27 27 H 1.08998 * 108.98243 * 161.98480 * 4 3 2 28 28 H 1.09000 * 108.97758 * 280.69387 * 4 3 2 29 29 H 0.97005 * 119.99845 * 179.97438 * 11 10 8 30 30 H 1.08998 * 109.11849 * 160.34562 * 16 5 4 31 31 H 1.09000 * 109.12196 * 279.48385 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1776 1.3762 0.0000 4 6 3.2245 1.5243 1.0879 5 7 4.0476 0.3336 1.2169 6 6 5.3855 0.4538 1.1077 7 8 6.1009 -0.5117 1.3001 8 6 5.9782 1.7456 0.7578 9 1 5.4212 2.6568 0.9191 10 6 7.2676 1.8002 0.2138 11 7 7.8888 0.6961 -0.1065 12 14 8.0995 3.4512 -0.0536 13 1 8.7652 3.8794 1.2028 14 1 9.1120 3.3263 -1.1327 15 1 7.0823 4.4605 -0.4437 16 6 3.4791 -0.9838 1.4591 17 6 2.2215 -1.1858 0.6578 18 1 1.5630 -1.9472 1.0759 19 6 2.2233 -1.0710 -0.8591 20 17 1.1721 -2.2081 -1.7827 21 17 3.7754 -0.6218 -1.6592 22 1 -0.3634 -0.8888 -0.5158 23 1 -0.3633 -0.0022 1.0277 24 1 -0.3633 0.8912 -0.5118 25 1 2.6489 1.5443 -0.9684 26 1 1.4045 2.1299 0.1494 27 1 3.8649 2.3737 0.8504 28 1 2.7245 1.7139 2.0377 29 1 8.7817 0.7339 -0.4836 30 1 4.2071 -1.7443 1.1765 31 1 3.2512 -1.0848 2.5202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803552389.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:32 Heat of formation + Delta-G solvation = -20.641503 kcal Electronic energy + Delta-G solvation = -18170.427870 eV Core-core repulsion = 15118.524572 eV Total energy + Delta-G solvation = -3051.903298 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 277.038 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.83822 -37.10294 -35.78088 -35.38777 -33.46373 -32.59995 -31.37209 -28.12468 -27.08769 -25.09896 -23.09440 -20.72800 -19.97354 -17.69822 -16.60565 -15.80278 -15.68165 -15.14976 -14.87180 -14.23926 -13.67406 -13.48302 -12.95506 -12.61391 -12.46455 -12.25466 -11.94235 -11.73058 -11.54276 -11.33971 -11.10187 -10.98125 -10.87383 -10.70722 -10.44216 -10.28310 -10.17392 -9.81287 -9.58813 -9.25562 -8.84984 -7.59762 -7.26592 -6.27870 -4.60630 1.53844 2.63318 3.14048 3.20936 3.22288 3.35540 4.07168 4.36705 4.39162 4.56400 4.62117 5.01715 5.06067 5.48139 5.55157 5.65712 5.71369 5.77731 5.86948 5.97424 6.14127 6.16251 6.27938 6.47155 6.54231 6.67637 7.45439 7.67495 8.13541 8.32487 9.03348 9.38011 10.55652 10.72054 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.027657 B = 0.006647 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.143529 B = 4211.258808 C = 4389.596947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 C -0.108 4.108 4 C 0.124 3.876 5 N -0.633 5.633 6 C 0.575 3.425 7 O -0.578 6.578 8 C -0.550 4.550 9 H 0.074 0.926 10 C 0.094 3.906 11 N -0.778 5.778 12 Si 0.903 3.097 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.266 1.266 16 C 0.149 3.851 17 C -0.114 4.114 18 H 0.118 0.882 19 C -0.003 4.003 20 Cl -0.119 7.119 21 Cl -0.054 7.054 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.037 0.963 29 H 0.270 0.730 30 H 0.094 0.906 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.131 0.278 -1.129 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.078 4.078 3 C -0.146 4.146 4 C -0.001 4.001 5 N -0.370 5.370 6 C 0.380 3.620 7 O -0.461 6.461 8 C -0.587 4.587 9 H 0.092 0.908 10 C -0.125 4.125 11 N -0.407 5.407 12 Si 0.727 3.273 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.190 1.190 16 C 0.025 3.975 17 C -0.134 4.134 18 H 0.136 0.864 19 C -0.054 4.054 20 Cl -0.092 7.092 21 Cl -0.026 7.026 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.521 -0.413 -1.250 13.584 hybrid contribution 0.271 0.616 -0.482 0.828 sum -13.249 0.203 -1.731 13.363 Atomic orbital electron populations 1.21613 0.90802 1.03265 1.02580 1.22148 0.95385 0.92331 0.97929 1.21232 0.98624 0.92296 1.02493 1.20750 0.92852 0.90859 0.95592 1.47367 1.07439 1.04456 1.77722 1.18176 0.78441 0.89848 0.75547 1.90559 1.59578 1.41759 1.54158 1.20849 1.00423 0.91859 1.45543 0.90824 1.25617 0.96671 0.97031 0.93199 1.69888 1.12163 1.27854 1.30810 0.86469 0.79432 0.82916 0.78444 1.19603 1.20633 1.18984 1.19813 0.91991 0.89485 0.96250 1.22829 1.01129 0.99409 0.90019 0.86364 1.27367 0.88643 0.99419 0.89997 1.98689 1.68135 1.64838 1.77524 1.98816 1.29793 1.91962 1.82038 0.91253 0.91299 0.91446 0.90126 0.90655 0.87782 0.94426 0.91969 0.88789 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.59 37.16 0.36 -0.99 16 2 C -0.08 -1.07 2.59 -154.94 -0.40 -1.47 16 3 C -0.11 -1.60 5.28 -27.85 -0.15 -1.75 16 4 C 0.12 2.19 6.22 -5.33 -0.03 2.16 16 5 N -0.63 -13.58 1.98 -179.37 -0.36 -13.93 16 6 C 0.57 15.54 7.10 -12.99 -0.09 15.45 16 7 O -0.58 -18.04 14.78 5.20 0.08 -17.96 16 8 C -0.55 -14.81 8.60 -35.63 -0.31 -15.12 16 9 H 0.07 1.81 5.81 -52.49 -0.31 1.50 16 10 C 0.09 2.55 5.46 -17.37 -0.09 2.46 16 11 N -0.78 -22.83 12.15 55.55 0.67 -22.16 16 12 Si 0.90 19.85 29.56 -169.99 -5.03 14.83 16 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 15 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 16 C 0.15 2.82 5.78 -5.83 -0.03 2.79 16 17 C -0.11 -1.75 5.40 -92.72 -0.50 -2.25 16 18 H 0.12 1.53 8.14 -51.93 -0.42 1.10 16 19 C 0.00 -0.05 3.59 -26.75 -0.10 -0.14 16 20 Cl -0.12 -1.69 27.24 -51.86 -1.41 -3.11 16 21 Cl -0.05 -1.08 25.67 -51.86 -1.33 -2.41 16 22 H 0.07 0.75 6.05 -51.93 -0.31 0.43 16 23 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 24 H 0.07 0.65 7.88 -51.93 -0.41 0.24 16 25 H 0.08 1.33 6.84 -51.93 -0.36 0.97 16 26 H 0.07 0.89 7.70 -51.93 -0.40 0.49 16 27 H 0.10 1.97 5.04 -51.93 -0.26 1.71 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 30 H 0.09 2.07 7.05 -51.93 -0.37 1.70 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 279.54 15.07 4.21 4.21 Total: -1.00 -32.01 279.54 -7.75 -39.75 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -3.24 Total: -0.36 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.35 Total: 1.14 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.32 Total: -36.09 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.08 Total: -17.96 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.83 kcal Atomic # 17 Polarization: -2.77 SS G_CDS: -2.74 Total: -5.51 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.01 -7.75 -39.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803552389.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.109 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds