Wall clock time and date at job start Mon Mar 30 2020 01:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52095 * 115.19842 * 2 1 4 4 C 1.51710 * 112.46537 * 129.10591 * 3 2 1 5 5 N 1.45318 * 111.99658 * 41.33607 * 4 3 2 6 6 C 1.34775 * 118.81697 * 124.07603 * 5 4 3 7 7 O 1.21691 * 120.00081 * 175.11460 * 6 5 4 8 8 C 1.46372 * 120.00008 * 355.11362 * 6 5 4 9 9 H 1.08002 * 120.00257 * 21.27704 * 8 6 5 10 10 C 1.40055 * 119.99975 * 201.27209 * 8 6 5 11 11 N 1.30668 * 119.99702 * 6.88997 * 10 8 6 12 12 Si 1.86802 * 120.00038 * 186.88907 * 10 8 6 13 13 H 1.48498 * 109.46986 * 84.99197 * 12 10 8 14 14 H 1.48499 * 109.46912 * 204.99466 * 12 10 8 15 15 H 1.48505 * 109.46922 * 324.99382 * 12 10 8 16 16 C 1.45518 * 122.36396 * 304.10303 * 5 4 3 17 17 C 1.50484 * 111.06366 * 40.09084 * 16 5 4 18 18 H 1.09001 * 113.22756 * 202.80583 * 17 16 5 19 19 C 1.52125 * 121.31951 * 58.07372 * 17 16 5 20 20 Cl 1.80299 * 117.54546 * 142.91718 * 19 17 16 21 21 Cl 1.80304 * 117.53877 * 357.72385 * 19 17 16 22 22 H 1.08998 * 109.47487 * 149.87211 * 1 2 3 23 23 H 1.09008 * 109.46964 * 269.87470 * 1 2 3 24 24 H 1.09006 * 109.46648 * 29.86809 * 1 2 3 25 25 H 1.09003 * 108.88280 * 249.87385 * 3 2 1 26 26 H 1.08997 * 108.88437 * 8.33125 * 3 2 1 27 27 H 1.08998 * 108.98243 * 161.98480 * 4 3 2 28 28 H 1.09000 * 108.97758 * 280.69387 * 4 3 2 29 29 H 0.97005 * 119.99845 * 179.97438 * 11 10 8 30 30 H 1.08998 * 109.11849 * 160.34562 * 16 5 4 31 31 H 1.09000 * 109.12196 * 279.48385 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1776 1.3762 0.0000 4 6 3.2245 1.5243 1.0879 5 7 4.0476 0.3336 1.2169 6 6 5.3855 0.4538 1.1077 7 8 6.1009 -0.5117 1.3001 8 6 5.9782 1.7456 0.7578 9 1 5.4212 2.6568 0.9191 10 6 7.2676 1.8002 0.2138 11 7 7.8888 0.6961 -0.1065 12 14 8.0995 3.4512 -0.0536 13 1 8.7652 3.8794 1.2028 14 1 9.1120 3.3263 -1.1327 15 1 7.0823 4.4605 -0.4437 16 6 3.4791 -0.9838 1.4591 17 6 2.2215 -1.1858 0.6578 18 1 1.5630 -1.9472 1.0759 19 6 2.2233 -1.0710 -0.8591 20 17 1.1721 -2.2081 -1.7827 21 17 3.7754 -0.6218 -1.6592 22 1 -0.3634 -0.8888 -0.5158 23 1 -0.3633 -0.0022 1.0277 24 1 -0.3633 0.8912 -0.5118 25 1 2.6489 1.5443 -0.9684 26 1 1.4045 2.1299 0.1494 27 1 3.8649 2.3737 0.8504 28 1 2.7245 1.7139 2.0377 29 1 8.7817 0.7339 -0.4836 30 1 4.2071 -1.7443 1.1765 31 1 3.2512 -1.0848 2.5202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803552389.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:31 Heat of formation + Delta-G solvation = -40.259375 kcal Electronic energy + Delta-G solvation = -18171.278565 eV Core-core repulsion = 15118.524572 eV Total energy + Delta-G solvation = -3052.753993 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 277.038 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.22912 -38.87459 -37.07106 -36.81306 -35.13733 -34.62790 -32.75984 -29.40291 -28.73346 -26.78832 -24.46748 -22.31486 -21.46093 -19.27950 -18.11625 -17.72182 -17.09804 -16.63056 -16.39510 -15.89804 -15.22849 -14.76519 -14.44771 -14.01672 -13.79333 -13.65497 -13.37936 -13.23940 -12.93750 -12.84841 -12.75222 -12.57575 -12.24201 -12.11996 -12.00052 -11.92295 -11.74142 -11.26482 -10.89436 -10.85304 -10.52643 -9.70250 -9.01739 -8.31220 -6.71761 0.28674 1.33684 1.39895 1.42273 1.54373 2.13068 2.25741 2.54059 2.85869 3.14465 3.35525 3.65292 3.88420 3.94453 4.21783 4.38457 4.55593 4.62655 4.74929 4.84862 4.90226 4.97670 5.05408 5.12148 5.27693 5.42117 5.45841 5.85697 6.25724 6.46860 6.96347 7.47266 8.53511 8.71221 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.027657 B = 0.006647 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.143529 B = 4211.258808 C = 4389.596947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.053 4.053 3 C -0.106 4.106 4 C 0.118 3.882 5 N -0.631 5.631 6 C 0.566 3.434 7 O -0.634 6.634 8 C -0.571 4.571 9 H 0.094 0.906 10 C 0.037 3.963 11 N -0.833 5.833 12 Si 0.983 3.017 13 H -0.265 1.265 14 H -0.279 1.279 15 H -0.245 1.245 16 C 0.149 3.851 17 C -0.116 4.116 18 H 0.150 0.850 19 C -0.018 4.018 20 Cl -0.100 7.100 21 Cl -0.102 7.102 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.271 0.729 30 H 0.053 0.947 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.997 2.095 -0.789 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.006 4.006 5 N -0.366 5.366 6 C 0.371 3.629 7 O -0.521 6.521 8 C -0.607 4.607 9 H 0.112 0.888 10 C -0.177 4.177 11 N -0.463 5.463 12 Si 0.803 3.197 13 H -0.190 1.190 14 H -0.205 1.205 15 H -0.168 1.168 16 C 0.025 3.975 17 C -0.135 4.135 18 H 0.168 0.832 19 C -0.069 4.069 20 Cl -0.073 7.073 21 Cl -0.075 7.075 22 H 0.088 0.912 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.136 0.864 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.466 1.422 -0.907 16.553 hybrid contribution 1.044 -0.026 -0.541 1.176 sum -15.422 1.396 -1.449 15.553 Atomic orbital electron populations 1.21676 0.87388 1.04251 1.04399 1.22352 0.97444 0.90908 0.94724 1.21228 0.98803 0.94114 1.00265 1.20949 0.92947 0.88589 0.98075 1.47172 1.06356 1.06590 1.76479 1.18421 0.80163 0.89349 0.75010 1.90511 1.61745 1.43269 1.56580 1.21359 1.01266 0.92789 1.45323 0.88795 1.26770 0.97309 1.01287 0.92345 1.70067 1.12732 1.31006 1.32491 0.85242 0.78399 0.77620 0.78397 1.18980 1.20455 1.16795 1.19822 0.92549 0.87148 0.97977 1.22813 0.99975 1.01593 0.89138 0.83232 1.27585 0.87706 1.01574 0.90054 1.98689 1.66994 1.64318 1.77258 1.98812 1.33364 1.92403 1.82910 0.91159 0.88965 0.89649 0.92007 0.86396 0.89384 0.91636 0.91888 0.92868 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 9.59 71.98 0.69 -1.28 16 2 C -0.05 -1.30 2.59 -52.46 -0.14 -1.44 16 3 C -0.11 -2.82 5.28 29.87 0.16 -2.67 16 4 C 0.12 3.94 6.22 86.18 0.54 4.47 16 5 N -0.63 -27.14 1.98 -839.61 -1.66 -28.81 16 6 C 0.57 31.58 7.10 86.36 0.61 32.19 16 7 O -0.63 -41.70 14.78 -4.32 -0.06 -41.76 16 8 C -0.57 -31.26 8.60 24.83 0.21 -31.05 16 9 H 0.09 4.58 5.81 -2.91 -0.02 4.56 16 10 C 0.04 2.05 5.46 85.31 0.47 2.51 16 11 N -0.83 -50.93 12.15 21.84 0.27 -50.66 16 12 Si 0.98 41.03 29.56 68.60 2.03 43.06 16 13 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 14 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.24 -9.30 7.11 99.48 0.71 -8.59 16 16 C 0.15 5.65 5.78 85.75 0.50 6.14 16 17 C -0.12 -3.32 5.40 -12.16 -0.07 -3.38 16 18 H 0.15 3.36 8.14 -2.39 -0.02 3.34 16 19 C -0.02 -0.55 3.59 30.58 0.11 -0.44 16 20 Cl -0.10 -2.65 27.24 -2.72 -0.07 -2.72 16 21 Cl -0.10 -4.20 25.67 -2.72 -0.07 -4.27 16 22 H 0.07 1.19 6.05 -2.39 -0.01 1.17 16 23 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.08 1.16 7.88 -2.38 -0.02 1.14 16 25 H 0.06 1.94 6.84 -2.39 -0.02 1.92 16 26 H 0.12 2.18 7.70 -2.39 -0.02 2.17 16 27 H 0.09 3.23 5.04 -2.39 -0.01 3.22 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.27 15.30 8.29 -92.70 -0.77 14.53 16 30 H 0.05 2.46 7.05 -2.39 -0.02 2.45 16 31 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -74.21 279.54 4.66 -69.55 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.16 Total: 10.56 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 3.08 Total: 5.05 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -1.40 Total: -79.47 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -0.06 Total: -41.76 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Atomic # 17 Polarization: -6.85 SS G_CDS: -0.14 Total: -6.99 kcal Total: -74.21 4.66 -69.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803552389.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.290 kcal (2) G-P(sol) polarization free energy of solvation -74.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds