Wall clock time and date at job start Mon Mar 30 2020 01:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.36653 * 122.94610 * 224.10503 * 3 2 1 5 5 S 1.70598 * 110.54800 * 180.02562 * 4 3 2 6 6 C 1.75682 * 91.84796 * 359.83522 * 5 4 3 7 7 C 1.46532 * 125.06751 * 180.17941 * 6 5 4 8 8 O 1.21619 * 120.00193 * 180.13115 * 7 6 5 9 9 O 1.34886 * 120.00081 * 0.12513 * 7 6 5 10 10 C 1.45198 * 116.99636 * 175.18664 * 9 7 6 11 11 C 1.50697 * 112.85066 * 54.50742 * 10 9 7 12 12 H 1.08004 * 119.99945 * 244.94840 * 11 10 9 13 13 C 1.37880 * 120.00419 * 64.94757 * 11 10 9 14 14 N 1.31513 * 119.99821 * 354.95535 * 13 11 10 15 15 Si 1.86802 * 120.00105 * 174.96062 * 13 11 10 16 16 H 1.48500 * 109.47291 * 89.99709 * 15 13 11 17 17 H 1.48498 * 109.47036 * 209.99665 * 15 13 11 18 18 H 1.48504 * 109.46940 * 329.99971 * 15 13 11 19 19 C 1.53773 * 113.61785 * 283.19374 * 10 9 7 20 20 C 1.53782 * 87.08369 * 220.02260 * 19 10 9 21 21 C 1.53781 * 113.60998 * 185.69583 * 10 9 7 22 22 C 1.35045 * 109.86680 * 0.29050 * 6 5 4 23 23 H 1.07999 * 124.72498 * 0.02562 * 4 3 2 24 24 H 0.97000 * 119.99752 * 185.00228 * 14 13 11 25 25 H 1.09001 * 113.61578 * 334.57053 * 19 10 9 26 26 H 1.08997 * 113.61758 * 105.47136 * 19 10 9 27 27 H 1.08991 * 113.61529 * 270.88640 * 20 19 10 28 28 H 1.08999 * 113.69307 * 139.98668 * 20 19 10 29 29 H 1.09004 * 113.61896 * 254.53405 * 21 10 9 30 30 H 1.09002 * 113.61715 * 25.35260 * 21 10 9 31 31 H 1.07993 * 123.18500 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3108 0.8244 0.7981 5 16 4.9772 0.5627 0.5427 6 6 4.6561 -0.6810 -0.6559 7 6 5.6813 -1.4363 -1.3809 8 8 5.3543 -2.2779 -2.1957 9 8 6.9878 -1.1980 -1.1447 10 6 7.9464 -2.0559 -1.8180 11 6 7.7549 -2.0874 -3.3124 12 1 7.4614 -3.0053 -3.8000 13 6 7.9542 -0.9444 -4.0574 14 7 8.2142 0.1957 -3.4555 15 14 7.8550 -1.0152 -5.9214 16 1 6.4583 -0.7544 -6.3531 17 1 8.7535 0.0134 -6.5044 18 1 8.2743 -2.3610 -6.3886 19 6 8.0786 -3.4498 -1.1825 20 6 9.5916 -3.3339 -1.4322 21 6 9.4022 -1.8084 -1.3887 22 6 3.3235 -0.8354 -0.8114 23 1 2.9002 1.5413 1.4937 24 1 8.2825 1.0130 -3.9735 25 1 7.8111 -3.4752 -0.1261 26 1 7.5999 -4.2404 -1.7603 27 1 9.9030 -3.7076 -2.4075 28 1 10.2012 -3.7216 -0.6160 29 1 9.9922 -1.2738 -2.1332 30 1 9.4966 -1.3837 -0.3893 31 1 2.8868 -1.5456 -1.4978 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856682.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:08 Heat of formation + Delta-G solvation = 2.113407 kcal Electronic energy + Delta-G solvation = -18682.294521 eV Core-core repulsion = 15635.854505 eV Total energy + Delta-G solvation = -3046.440015 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.41592 -38.41914 -37.03480 -35.80325 -34.21847 -32.32724 -30.15025 -26.34134 -25.62829 -24.62597 -23.81120 -22.15013 -19.39006 -18.64942 -18.47524 -17.08809 -16.58089 -15.43739 -15.12811 -14.92901 -14.53280 -14.12236 -13.96030 -13.80882 -13.49675 -13.08560 -12.56751 -12.47921 -12.27784 -12.08728 -11.64983 -11.24913 -11.07520 -10.94563 -10.88204 -10.50074 -10.31581 -10.04149 -9.86925 -9.53519 -8.92442 -8.88285 -8.63046 -8.58152 -8.56142 -6.15859 -4.24992 0.43769 1.44101 1.71986 1.84644 2.66584 3.25255 3.32375 3.36325 3.39720 3.68260 3.85089 4.15400 4.33563 4.81570 5.15383 5.21798 5.54633 5.69487 5.74247 5.80526 5.92141 6.09834 6.19170 6.38207 6.46761 6.57852 6.82540 7.04985 7.25474 7.44924 7.48265 7.67902 7.82526 8.26524 8.76721 9.03523 9.42946 10.88846 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.019863 B = 0.005870 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.344387 B = 4768.874219 C = 5351.835613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.282 3.718 3 C -0.061 4.061 4 C -0.215 4.215 5 S 0.319 5.681 6 C -0.224 4.224 7 C 0.530 3.470 8 O -0.482 6.482 9 O -0.344 6.344 10 C 0.239 3.761 11 C -0.505 4.505 12 H 0.069 0.931 13 C 0.075 3.925 14 N -0.865 5.865 15 Si 0.893 3.107 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.270 1.270 19 C -0.162 4.162 20 C -0.130 4.130 21 C -0.105 4.105 22 C -0.045 4.045 23 H 0.178 0.822 24 H 0.263 0.737 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 1.563 9.209 9.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.034 4.034 3 C -0.080 4.080 4 C -0.358 4.358 5 S 0.588 5.412 6 C -0.344 4.344 7 C 0.371 3.629 8 O -0.371 6.371 9 O -0.261 6.261 10 C 0.205 3.795 11 C -0.542 4.542 12 H 0.087 0.913 13 C -0.130 4.130 14 N -0.502 5.502 15 Si 0.720 3.280 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.200 4.200 20 C -0.168 4.168 21 C -0.143 4.143 22 C -0.076 4.076 23 H 0.195 0.805 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.636 2.112 9.521 10.102 hybrid contribution -1.165 -0.465 -1.728 2.136 sum -3.801 1.647 7.792 8.825 Atomic orbital electron populations 1.81230 1.11811 1.08660 1.08746 1.25054 0.91820 0.93299 0.93275 1.15001 0.85680 1.03340 1.03930 1.26154 1.01104 1.04143 1.04374 1.83525 0.98301 1.28661 1.30698 1.23903 0.96707 1.06417 1.07344 1.19177 0.82952 0.80643 0.80119 1.90819 1.82857 1.32334 1.31039 1.86539 1.13945 1.59335 1.66259 1.21311 0.83438 0.83268 0.91455 1.20926 1.46996 0.97336 0.88982 0.91293 1.25035 0.93674 0.95461 0.98877 1.70005 1.46061 0.98315 1.35825 0.86558 0.78125 0.78081 0.85213 1.20483 1.21048 1.19508 1.23576 0.96617 1.00452 0.99346 1.22506 0.95712 0.97788 1.00770 1.22893 0.96841 0.94525 1.00059 1.20208 0.90932 0.98424 0.98035 0.80473 0.92679 0.91946 0.91904 0.90166 0.92875 0.90434 0.92188 0.82181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.50 18.54 41.84 0.78 -5.73 16 2 C 0.28 3.81 15.55 -22.47 -0.35 3.46 16 3 C -0.06 -0.77 5.67 -108.31 -0.61 -1.38 16 4 C -0.22 -2.24 10.82 30.16 0.33 -1.91 16 5 S 0.32 4.00 22.87 -107.50 -2.46 1.54 16 6 C -0.22 -3.81 6.38 -37.38 -0.24 -4.05 16 7 C 0.53 11.71 7.58 34.07 0.26 11.97 16 8 O -0.48 -11.94 15.16 -19.36 -0.29 -12.23 16 9 O -0.34 -8.02 9.76 -41.00 -0.40 -8.42 16 10 C 0.24 5.67 0.50 -90.96 -0.05 5.63 16 11 C -0.51 -13.36 6.29 -34.44 -0.22 -13.58 16 12 H 0.07 1.89 7.82 -52.48 -0.41 1.48 16 13 C 0.08 1.99 5.24 -17.82 -0.09 1.90 16 14 N -0.87 -23.31 12.54 55.43 0.70 -22.61 16 15 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.16 -3.34 7.29 -25.92 -0.19 -3.53 16 20 C -0.13 -2.45 7.81 -25.92 -0.20 -2.66 16 21 C -0.11 -2.26 7.19 -25.92 -0.19 -2.45 16 22 C -0.04 -0.67 9.72 -40.49 -0.39 -1.06 16 23 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 24 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.06 1.33 8.09 -51.93 -0.42 0.91 16 27 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.81 7.63 -51.93 -0.40 1.41 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.16 2.36 8.03 -52.49 -0.42 1.94 16 LS Contribution 300.27 15.07 4.53 4.53 Total: -1.00 -29.84 300.27 -7.02 -36.86 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -2.90 Total: -2.17 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -1.94 Total: -7.67 kcal Atomic # 7 Polarization: -29.81 SS G_CDS: 1.47 Total: -28.34 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.69 Total: -20.66 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -2.46 Total: 1.54 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.84 -7.02 -36.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856682.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.974 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds