Wall clock time and date at job start Mon Mar 30 2020 01:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.36653 * 122.94610 * 224.10503 * 3 2 1 5 5 S 1.70598 * 110.54800 * 180.02562 * 4 3 2 6 6 C 1.75682 * 91.84796 * 359.83522 * 5 4 3 7 7 C 1.46532 * 125.06751 * 180.17941 * 6 5 4 8 8 O 1.21619 * 120.00193 * 180.13115 * 7 6 5 9 9 O 1.34886 * 120.00081 * 0.12513 * 7 6 5 10 10 C 1.45198 * 116.99636 * 175.18664 * 9 7 6 11 11 C 1.50697 * 112.85066 * 54.50742 * 10 9 7 12 12 H 1.08004 * 119.99945 * 244.94840 * 11 10 9 13 13 C 1.37880 * 120.00419 * 64.94757 * 11 10 9 14 14 N 1.31513 * 119.99821 * 354.95535 * 13 11 10 15 15 Si 1.86802 * 120.00105 * 174.96062 * 13 11 10 16 16 H 1.48500 * 109.47291 * 89.99709 * 15 13 11 17 17 H 1.48498 * 109.47036 * 209.99665 * 15 13 11 18 18 H 1.48504 * 109.46940 * 329.99971 * 15 13 11 19 19 C 1.53773 * 113.61785 * 283.19374 * 10 9 7 20 20 C 1.53782 * 87.08369 * 220.02260 * 19 10 9 21 21 C 1.53781 * 113.60998 * 185.69583 * 10 9 7 22 22 C 1.35045 * 109.86680 * 0.29050 * 6 5 4 23 23 H 1.07999 * 124.72498 * 0.02562 * 4 3 2 24 24 H 0.97000 * 119.99752 * 185.00228 * 14 13 11 25 25 H 1.09001 * 113.61578 * 334.57053 * 19 10 9 26 26 H 1.08997 * 113.61758 * 105.47136 * 19 10 9 27 27 H 1.08991 * 113.61529 * 270.88640 * 20 19 10 28 28 H 1.08999 * 113.69307 * 139.98668 * 20 19 10 29 29 H 1.09004 * 113.61896 * 254.53405 * 21 10 9 30 30 H 1.09002 * 113.61715 * 25.35260 * 21 10 9 31 31 H 1.07993 * 123.18500 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3108 0.8244 0.7981 5 16 4.9772 0.5627 0.5427 6 6 4.6561 -0.6810 -0.6559 7 6 5.6813 -1.4363 -1.3809 8 8 5.3543 -2.2779 -2.1957 9 8 6.9878 -1.1980 -1.1447 10 6 7.9464 -2.0559 -1.8180 11 6 7.7549 -2.0874 -3.3124 12 1 7.4614 -3.0053 -3.8000 13 6 7.9542 -0.9444 -4.0574 14 7 8.2142 0.1957 -3.4555 15 14 7.8550 -1.0152 -5.9214 16 1 6.4583 -0.7544 -6.3531 17 1 8.7535 0.0134 -6.5044 18 1 8.2743 -2.3610 -6.3886 19 6 8.0786 -3.4498 -1.1825 20 6 9.5916 -3.3339 -1.4322 21 6 9.4022 -1.8084 -1.3887 22 6 3.3235 -0.8354 -0.8114 23 1 2.9002 1.5413 1.4937 24 1 8.2825 1.0130 -3.9735 25 1 7.8111 -3.4752 -0.1261 26 1 7.5999 -4.2404 -1.7603 27 1 9.9030 -3.7076 -2.4075 28 1 10.2012 -3.7216 -0.6160 29 1 9.9922 -1.2738 -2.1332 30 1 9.4966 -1.3837 -0.3893 31 1 2.8868 -1.5456 -1.4978 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856682.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:07 Heat of formation + Delta-G solvation = -13.975182 kcal Electronic energy + Delta-G solvation = -18682.992174 eV Core-core repulsion = 15635.854505 eV Total energy + Delta-G solvation = -3047.137669 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06397 -39.67559 -38.61708 -36.97148 -35.96319 -34.32084 -31.35701 -28.18889 -26.83118 -26.29955 -25.36745 -23.66022 -20.73739 -20.41434 -19.85613 -18.41402 -18.03459 -17.06018 -16.83101 -16.66266 -16.22220 -15.65529 -15.31086 -15.17294 -14.57993 -14.48621 -14.10373 -13.70169 -13.48124 -13.41858 -13.36994 -12.95078 -12.94628 -12.75797 -12.18232 -12.08772 -12.01675 -11.82824 -11.58816 -11.25199 -10.77999 -10.50519 -10.40500 -10.04497 -9.61704 -8.16514 -6.29346 -0.63770 0.36840 0.54255 0.77398 1.35627 1.38902 1.47443 1.58006 2.07766 2.24170 2.39062 2.45458 3.01150 3.17750 3.85972 4.00797 4.06680 4.18722 4.24288 4.39134 4.55503 4.72354 4.90649 4.94694 4.96340 5.03067 5.19869 5.41739 5.51036 5.68760 5.81235 5.97823 6.39711 6.45116 6.71825 7.28095 7.42162 8.87501 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.019863 B = 0.005870 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.344387 B = 4768.874219 C = 5351.835613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.304 3.696 3 C -0.077 4.077 4 C -0.167 4.167 5 S 0.369 5.631 6 C -0.282 4.282 7 C 0.525 3.475 8 O -0.528 6.528 9 O -0.351 6.351 10 C 0.212 3.788 11 C -0.516 4.516 12 H 0.045 0.955 13 C 0.037 3.963 14 N -0.885 5.885 15 Si 0.939 3.061 16 H -0.287 1.287 17 H -0.273 1.273 18 H -0.268 1.268 19 C -0.156 4.156 20 C -0.112 4.112 21 C -0.102 4.102 22 C -0.026 4.026 23 H 0.225 0.775 24 H 0.264 0.736 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 2.694 11.159 11.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.013 4.013 3 C -0.094 4.094 4 C -0.309 4.309 5 S 0.638 5.362 6 C -0.400 4.400 7 C 0.369 3.631 8 O -0.419 6.419 9 O -0.267 6.267 10 C 0.178 3.822 11 C -0.554 4.554 12 H 0.064 0.936 13 C -0.166 4.166 14 N -0.523 5.523 15 Si 0.765 3.235 16 H -0.214 1.214 17 H -0.198 1.198 18 H -0.193 1.193 19 C -0.194 4.194 20 C -0.149 4.149 21 C -0.140 4.140 22 C -0.059 4.059 23 H 0.241 0.759 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.667 3.246 11.478 12.223 hybrid contribution -1.212 -0.772 -2.243 2.664 sum -3.879 2.473 9.235 10.318 Atomic orbital electron populations 1.81263 1.12676 1.09798 1.09899 1.24975 0.91628 0.92346 0.92317 1.14773 0.85151 1.04410 1.05078 1.26684 0.99881 1.02152 1.02193 1.83379 0.99016 1.25903 1.27934 1.23506 0.95902 1.09798 1.10792 1.19864 0.83164 0.80409 0.79709 1.90776 1.83274 1.34536 1.33355 1.86492 1.14807 1.59369 1.66040 1.21532 0.84689 0.85413 0.90555 1.20998 1.46880 0.96497 0.90982 0.93642 1.25563 0.93756 0.95379 1.01927 1.70060 1.47064 0.98475 1.36694 0.85846 0.77602 0.78322 0.81704 1.21393 1.19839 1.19259 1.23529 0.97889 0.98079 0.99900 1.22430 0.94907 0.95699 1.01891 1.22862 0.94889 0.96212 1.00053 1.20233 0.90565 0.97802 0.97321 0.75869 0.92662 0.90025 0.93441 0.90935 0.88901 0.92924 0.90448 0.83214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.24 18.54 19.00 0.35 -12.89 16 2 C 0.30 7.53 15.55 88.33 1.37 8.90 16 3 C -0.08 -1.74 5.67 -22.26 -0.13 -1.87 16 4 C -0.17 -2.73 10.82 67.45 0.73 -2.00 16 5 S 0.37 8.17 22.87 -56.49 -1.29 6.88 16 6 C -0.28 -9.42 6.38 23.70 0.15 -9.27 16 7 C 0.52 23.71 7.58 69.98 0.53 24.24 16 8 O -0.53 -27.38 15.16 19.45 0.29 -27.09 16 9 O -0.35 -16.51 9.76 -58.01 -0.57 -17.08 16 10 C 0.21 10.20 0.50 -11.02 -0.01 10.19 16 11 C -0.52 -28.15 6.29 25.60 0.16 -27.99 16 12 H 0.05 2.62 7.82 -2.91 -0.02 2.59 16 13 C 0.04 1.99 5.24 84.66 0.44 2.43 16 14 N -0.89 -48.38 12.54 21.45 0.27 -48.12 16 15 Si 0.94 43.78 29.54 68.60 2.03 45.81 16 16 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 C -0.16 -6.39 7.29 31.12 0.23 -6.17 16 20 C -0.11 -4.06 7.81 31.12 0.24 -3.82 16 21 C -0.10 -4.34 7.19 31.12 0.22 -4.12 16 22 C -0.03 -0.77 9.72 21.68 0.21 -0.56 16 23 H 0.22 1.66 8.06 -2.91 -0.02 1.64 16 24 H 0.26 13.78 8.32 -92.71 -0.77 13.00 16 25 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 26 H 0.05 2.05 8.09 -2.39 -0.02 2.03 16 27 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.05 2.47 7.63 -2.39 -0.02 2.45 16 30 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.15 4.56 8.03 -2.91 -0.02 4.54 16 Total: -1.00 -67.39 300.27 6.41 -60.98 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: 1.16 Total: 1.52 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 4.16 Total: -10.01 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: 0.62 Total: -61.01 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.27 Total: -44.17 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 8.17 SS G_CDS: -1.29 Total: 6.88 kcal Total: -67.39 6.41 -60.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856682.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.008 kcal (2) G-P(sol) polarization free energy of solvation -67.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds