Wall clock time and date at job start Mon Mar 30 2020 01:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36766 * 125.16482 * 179.30304 * 3 2 1 5 5 C 1.36706 * 114.73865 * 179.76967 * 4 3 2 6 6 C 1.36741 * 114.74583 * 0.46578 * 5 4 3 7 7 C 1.46770 * 125.16185 * 179.82278 * 6 5 4 8 8 O 1.21581 * 119.99854 * 359.72281 * 7 6 5 9 9 O 1.34860 * 120.00392 * 179.44703 * 7 6 5 10 10 C 1.45196 * 117.00243 * 175.46651 * 9 7 6 11 11 C 1.50695 * 112.84982 * 54.49716 * 10 9 7 12 12 H 1.08008 * 119.99833 * 244.95281 * 11 10 9 13 13 C 1.37872 * 120.00469 * 64.95726 * 11 10 9 14 14 N 1.31518 * 119.99627 * 354.95420 * 13 11 10 15 15 Si 1.86798 * 120.00556 * 174.95626 * 13 11 10 16 16 H 1.48504 * 109.46737 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47276 * 119.99612 * 15 13 11 18 18 H 1.48495 * 109.47265 * 239.99740 * 15 13 11 19 19 C 1.53779 * 113.61234 * 283.18786 * 10 9 7 20 20 C 1.53779 * 87.08180 * 220.02007 * 19 10 9 21 21 C 1.53778 * 87.08125 * 25.43715 * 20 19 10 22 22 S 1.75831 * 109.67873 * 359.56189 * 6 5 4 23 23 H 1.07999 * 122.63260 * 0.04806 * 4 3 2 24 24 H 1.08005 * 122.62929 * 180.28371 * 5 4 3 25 25 H 0.97005 * 120.00063 * 185.00671 * 14 13 11 26 26 H 1.08999 * 113.61597 * 334.56947 * 19 10 9 27 27 H 1.09007 * 113.61042 * 105.47005 * 19 10 9 28 28 H 1.08995 * 113.61285 * 270.88076 * 20 19 10 29 29 H 1.09001 * 113.68981 * 139.99391 * 20 19 10 30 30 H 1.09002 * 113.61355 * 220.02276 * 21 20 19 31 31 H 1.08988 * 113.69575 * 89.12729 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3551 1.1190 -0.0136 5 6 4.6997 0.8723 -0.0056 6 6 5.0386 -0.4525 0.0046 7 6 6.4105 -0.9740 0.0108 8 8 7.3528 -0.2058 0.0018 9 8 6.6258 -2.3051 0.0321 10 6 8.0040 -2.7516 -0.0652 11 6 8.8951 -2.1319 0.9802 12 1 9.6944 -1.4686 0.6841 13 6 8.6901 -2.4116 2.3146 14 7 7.6578 -3.1385 2.6830 15 14 9.8783 -1.7580 3.5993 16 1 10.9481 -0.9745 2.9308 17 1 9.1464 -0.8850 4.5519 18 1 10.4852 -2.8954 4.3363 19 6 8.5772 -2.6748 -1.4901 20 6 9.2641 -4.0201 -1.2018 21 6 8.1506 -4.2786 -0.1731 22 16 3.5813 -1.4363 0.0167 23 1 2.9466 2.1186 -0.0250 24 1 5.4367 1.6618 -0.0101 25 1 7.4722 -3.2748 3.6253 26 1 7.8177 -2.7306 -2.2699 27 1 9.2754 -1.8505 -1.6360 28 1 10.2541 -3.9185 -0.7575 29 1 9.2476 -4.7100 -2.0456 30 1 8.5044 -4.7491 0.7443 31 1 7.2740 -4.7730 -0.5914 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810858731.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:17 Heat of formation + Delta-G solvation = 4.842711 kcal Electronic energy + Delta-G solvation = -18625.993099 eV Core-core repulsion = 15579.671436 eV Total energy + Delta-G solvation = -3046.321664 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.40016 -38.07768 -37.05895 -36.17189 -34.27128 -32.34982 -30.23855 -26.53248 -25.70852 -24.63675 -23.24757 -21.33743 -20.62686 -18.65616 -18.29434 -17.14764 -16.00914 -15.74756 -15.18686 -14.95908 -14.52357 -14.10391 -14.07283 -13.90807 -13.42288 -13.14027 -12.81968 -12.49314 -12.16260 -11.97216 -11.66439 -11.26254 -11.07947 -10.96365 -10.86620 -10.52651 -10.30180 -10.06972 -9.89147 -9.58529 -8.92049 -8.78688 -8.64062 -8.62230 -8.60405 -6.17916 -4.27577 0.12509 1.12910 1.79626 2.13517 2.78692 3.18486 3.21556 3.31262 3.36734 3.64742 3.78781 3.81490 4.31599 5.09097 5.16344 5.30225 5.52104 5.68084 5.77381 5.79579 5.91553 6.17429 6.21772 6.35528 6.44934 6.56430 6.80469 7.03365 7.23645 7.28934 7.45687 7.64099 7.79924 8.22791 8.74492 8.98180 9.40638 10.86764 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.021469 B = 0.005633 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.888364 B = 4969.760457 C = 5460.936942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.289 3.711 3 C -0.172 4.172 4 C -0.069 4.069 5 C -0.091 4.091 6 C -0.184 4.184 7 C 0.527 3.473 8 O -0.476 6.476 9 O -0.344 6.344 10 C 0.238 3.762 11 C -0.505 4.505 12 H 0.070 0.930 13 C 0.074 3.926 14 N -0.865 5.865 15 Si 0.894 3.106 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.162 4.162 20 C -0.130 4.130 21 C -0.106 4.106 22 S 0.285 5.715 23 H 0.154 0.846 24 H 0.162 0.838 25 H 0.263 0.737 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.173 3.038 -5.587 8.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.027 4.027 3 C -0.294 4.294 4 C -0.105 4.105 5 C -0.122 4.122 6 C -0.306 4.306 7 C 0.367 3.633 8 O -0.365 6.365 9 O -0.260 6.260 10 C 0.204 3.796 11 C -0.543 4.543 12 H 0.088 0.912 13 C -0.131 4.131 14 N -0.502 5.502 15 Si 0.721 3.279 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.200 4.200 20 C -0.168 4.168 21 C -0.144 4.144 22 S 0.555 5.445 23 H 0.172 0.828 24 H 0.179 0.821 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.929 1.441 -5.414 8.910 hybrid contribution 1.296 1.968 0.900 2.523 sum -5.633 3.409 -4.513 7.982 Atomic orbital electron populations 1.81274 1.11168 1.06920 1.09730 1.24293 0.90912 0.94122 0.93359 1.20702 0.89399 1.00294 1.18991 1.20391 0.91964 0.98570 0.99623 1.20455 0.95872 0.95420 1.00452 1.24749 0.97095 0.97494 1.11261 1.19270 0.85843 0.83308 0.74851 1.90812 1.42448 1.59014 1.44218 1.86551 1.37201 1.20847 1.81416 1.21350 0.75447 0.91630 0.91137 1.20970 1.14758 1.28423 0.90101 0.91160 1.25053 0.95399 0.93945 0.98728 1.70020 1.26492 1.36993 1.16649 0.86488 0.81356 0.78730 0.81294 1.19386 1.20858 1.20774 1.23576 0.99809 0.97801 0.98772 1.22505 0.98948 0.96796 0.98501 1.22896 0.96294 0.96512 0.98665 1.84625 0.92458 1.03085 1.64366 0.82839 0.82073 0.92674 0.91942 0.91850 0.90132 0.92847 0.90411 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.96 18.54 41.83 0.78 -5.18 16 2 C 0.29 3.72 15.81 -22.47 -0.36 3.36 16 3 C -0.17 -2.11 6.31 -38.19 -0.24 -2.35 16 4 C -0.07 -0.76 10.10 -40.67 -0.41 -1.17 16 5 C -0.09 -1.23 9.88 -40.68 -0.40 -1.63 16 6 C -0.18 -3.12 6.45 -36.68 -0.24 -3.35 16 7 C 0.53 11.53 7.59 34.18 0.26 11.78 16 8 O -0.48 -11.52 15.18 -19.33 -0.29 -11.82 16 9 O -0.34 -8.05 9.77 -40.93 -0.40 -8.45 16 10 C 0.24 5.64 0.50 -90.96 -0.05 5.59 16 11 C -0.51 -13.27 6.29 -34.44 -0.22 -13.48 16 12 H 0.07 1.91 7.82 -52.48 -0.41 1.50 16 13 C 0.07 1.96 5.24 -17.82 -0.09 1.87 16 14 N -0.86 -23.35 12.54 55.43 0.69 -22.65 16 15 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.16 -3.31 7.29 -25.92 -0.19 -3.50 16 20 C -0.13 -2.44 7.80 -25.92 -0.20 -2.65 16 21 C -0.11 -2.29 7.19 -25.92 -0.19 -2.47 16 22 S 0.29 4.02 23.09 -107.50 -2.48 1.54 16 23 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 24 H 0.16 2.04 8.04 -52.48 -0.42 1.62 16 25 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.06 1.32 8.09 -51.92 -0.42 0.90 16 28 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.82 7.63 -51.93 -0.40 1.43 16 31 H 0.06 1.21 8.14 -51.94 -0.42 0.78 16 LS Contribution 300.94 15.07 4.54 4.54 Total: -1.00 -29.17 300.94 -7.41 -36.58 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -2.90 Total: -2.27 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -2.32 Total: -8.00 kcal Atomic # 7 Polarization: -29.31 SS G_CDS: 1.47 Total: -27.84 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.69 Total: -20.27 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -2.48 Total: 1.54 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.17 -7.41 -36.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858731.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.418 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds