Wall clock time and date at job start Mon Mar 30 2020 01:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36766 * 125.16482 * 179.30304 * 3 2 1 5 5 C 1.36706 * 114.73865 * 179.76967 * 4 3 2 6 6 C 1.36741 * 114.74583 * 0.46578 * 5 4 3 7 7 C 1.46770 * 125.16185 * 179.82278 * 6 5 4 8 8 O 1.21581 * 119.99854 * 359.72281 * 7 6 5 9 9 O 1.34860 * 120.00392 * 179.44703 * 7 6 5 10 10 C 1.45196 * 117.00243 * 175.46651 * 9 7 6 11 11 C 1.50695 * 112.84982 * 54.49716 * 10 9 7 12 12 H 1.08008 * 119.99833 * 244.95281 * 11 10 9 13 13 C 1.37872 * 120.00469 * 64.95726 * 11 10 9 14 14 N 1.31518 * 119.99627 * 354.95420 * 13 11 10 15 15 Si 1.86798 * 120.00556 * 174.95626 * 13 11 10 16 16 H 1.48504 * 109.46737 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47276 * 119.99612 * 15 13 11 18 18 H 1.48495 * 109.47265 * 239.99740 * 15 13 11 19 19 C 1.53779 * 113.61234 * 283.18786 * 10 9 7 20 20 C 1.53779 * 87.08180 * 220.02007 * 19 10 9 21 21 C 1.53778 * 87.08125 * 25.43715 * 20 19 10 22 22 S 1.75831 * 109.67873 * 359.56189 * 6 5 4 23 23 H 1.07999 * 122.63260 * 0.04806 * 4 3 2 24 24 H 1.08005 * 122.62929 * 180.28371 * 5 4 3 25 25 H 0.97005 * 120.00063 * 185.00671 * 14 13 11 26 26 H 1.08999 * 113.61597 * 334.56947 * 19 10 9 27 27 H 1.09007 * 113.61042 * 105.47005 * 19 10 9 28 28 H 1.08995 * 113.61285 * 270.88076 * 20 19 10 29 29 H 1.09001 * 113.68981 * 139.99391 * 20 19 10 30 30 H 1.09002 * 113.61355 * 220.02276 * 21 20 19 31 31 H 1.08988 * 113.69575 * 89.12729 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3551 1.1190 -0.0136 5 6 4.6997 0.8723 -0.0056 6 6 5.0386 -0.4525 0.0046 7 6 6.4105 -0.9740 0.0108 8 8 7.3528 -0.2058 0.0018 9 8 6.6258 -2.3051 0.0321 10 6 8.0040 -2.7516 -0.0652 11 6 8.8951 -2.1319 0.9802 12 1 9.6944 -1.4686 0.6841 13 6 8.6901 -2.4116 2.3146 14 7 7.6578 -3.1385 2.6830 15 14 9.8783 -1.7580 3.5993 16 1 10.9481 -0.9745 2.9308 17 1 9.1464 -0.8850 4.5519 18 1 10.4852 -2.8954 4.3363 19 6 8.5772 -2.6748 -1.4901 20 6 9.2641 -4.0201 -1.2018 21 6 8.1506 -4.2786 -0.1731 22 16 3.5813 -1.4363 0.0167 23 1 2.9466 2.1186 -0.0250 24 1 5.4367 1.6618 -0.0101 25 1 7.4722 -3.2748 3.6253 26 1 7.8177 -2.7306 -2.2699 27 1 9.2754 -1.8505 -1.6360 28 1 10.2541 -3.9185 -0.7575 29 1 9.2476 -4.7100 -2.0456 30 1 8.5044 -4.7491 0.7443 31 1 7.2740 -4.7730 -0.5914 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810858731.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:17 Heat of formation + Delta-G solvation = -10.176016 kcal Electronic energy + Delta-G solvation = -18626.644360 eV Core-core repulsion = 15579.671436 eV Total energy + Delta-G solvation = -3046.972925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.07030 -39.36758 -38.52040 -37.34392 -36.00668 -34.33187 -31.43735 -28.27746 -27.14113 -26.31736 -24.85875 -22.74576 -21.74636 -20.44823 -19.69675 -18.77866 -17.38147 -17.12538 -16.84219 -16.79326 -16.21428 -15.64068 -15.30605 -15.22455 -14.77287 -14.41252 -14.11166 -13.88753 -13.51909 -13.43013 -13.11358 -12.94986 -12.91194 -12.76896 -12.19958 -12.08690 -12.00373 -11.83030 -11.61115 -11.28123 -10.79653 -10.51547 -10.42297 -9.93503 -9.70851 -8.17080 -6.31068 -1.02390 0.01035 0.66173 1.02138 1.35686 1.39998 1.50611 1.74735 2.05551 2.16941 2.27852 2.39645 2.71083 3.14871 3.95697 4.04563 4.08901 4.16650 4.32479 4.39023 4.58246 4.79541 4.89423 4.95506 5.04758 5.18419 5.21164 5.40293 5.48154 5.67604 5.78655 5.95055 6.23927 6.41977 6.71524 7.24007 7.40652 8.87032 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.021469 B = 0.005633 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.888364 B = 4969.760457 C = 5460.936942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.307 3.693 3 C -0.153 4.153 4 C -0.050 4.050 5 C -0.065 4.065 6 C -0.232 4.232 7 C 0.521 3.479 8 O -0.515 6.515 9 O -0.354 6.354 10 C 0.211 3.789 11 C -0.514 4.514 12 H 0.050 0.950 13 C 0.035 3.965 14 N -0.889 5.889 15 Si 0.944 3.056 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.273 1.273 19 C -0.155 4.155 20 C -0.111 4.111 21 C -0.106 4.106 22 S 0.285 5.715 23 H 0.197 0.803 24 H 0.171 0.829 25 H 0.263 0.737 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 3.858 -6.199 9.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.009 4.009 3 C -0.275 4.275 4 C -0.086 4.086 5 C -0.098 4.098 6 C -0.352 4.352 7 C 0.364 3.636 8 O -0.406 6.406 9 O -0.271 6.271 10 C 0.178 3.822 11 C -0.552 4.552 12 H 0.068 0.932 13 C -0.168 4.168 14 N -0.527 5.527 15 Si 0.770 3.230 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.192 4.192 20 C -0.149 4.149 21 C -0.143 4.143 22 S 0.555 5.445 23 H 0.214 0.786 24 H 0.188 0.812 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.997 2.239 -6.031 10.264 hybrid contribution 1.516 1.789 1.053 2.571 sum -6.481 4.028 -4.978 9.111 Atomic orbital electron populations 1.81314 1.11847 1.07633 1.10364 1.24138 0.90628 0.93413 0.92674 1.20680 0.88976 0.99931 1.17872 1.20695 0.90343 1.00068 0.97513 1.20735 0.97268 0.94253 0.97516 1.24375 0.95589 0.99196 1.16084 1.19909 0.87662 0.82475 0.73505 1.90771 1.44305 1.59299 1.46249 1.86511 1.36650 1.22161 1.81772 1.21568 0.75521 0.92792 0.92354 1.21042 1.14838 1.28080 0.91220 0.93201 1.25621 0.96617 0.94382 1.00208 1.70095 1.27655 1.38152 1.16776 0.85723 0.79669 0.78356 0.79295 1.19603 1.20948 1.19786 1.23515 0.99921 0.98395 0.97393 1.22431 0.97529 0.96269 0.98635 1.22875 0.97835 0.95102 0.98524 1.84605 0.91595 1.03543 1.64716 0.78563 0.81167 0.92740 0.90207 0.92995 0.90676 0.89018 0.92987 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -11.46 18.54 19.00 0.35 -11.11 16 2 C 0.31 7.02 15.81 88.33 1.40 8.42 16 3 C -0.15 -3.28 6.31 23.17 0.15 -3.14 16 4 C -0.05 -0.92 10.10 21.57 0.22 -0.70 16 5 C -0.06 -1.62 9.88 21.56 0.21 -1.41 16 6 C -0.23 -7.68 6.45 24.15 0.16 -7.53 16 7 C 0.52 23.20 7.59 70.05 0.53 23.74 16 8 O -0.52 -25.61 15.18 19.57 0.30 -25.31 16 9 O -0.35 -16.91 9.77 -57.73 -0.56 -17.48 16 10 C 0.21 10.18 0.50 -11.01 -0.01 10.18 16 11 C -0.51 -27.74 6.29 25.60 0.16 -27.57 16 12 H 0.05 2.81 7.82 -2.91 -0.02 2.79 16 13 C 0.03 1.86 5.24 84.65 0.44 2.30 16 14 N -0.89 -49.00 12.54 21.45 0.27 -48.74 16 15 Si 0.94 43.25 29.54 68.60 2.03 45.28 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 C -0.15 -6.28 7.29 31.12 0.23 -6.05 16 20 C -0.11 -4.05 7.80 31.12 0.24 -3.81 16 21 C -0.11 -4.56 7.19 31.12 0.22 -4.33 16 22 S 0.28 7.71 23.09 -56.49 -1.30 6.40 16 23 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 24 H 0.17 3.95 8.04 -2.91 -0.02 3.92 16 25 H 0.26 13.86 8.32 -92.70 -0.77 13.09 16 26 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 27 H 0.05 2.19 8.09 -2.38 -0.02 2.17 16 28 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.05 2.48 7.63 -2.39 -0.02 2.46 16 31 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -64.62 300.94 6.19 -58.43 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: 1.16 Total: 2.44 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 3.95 Total: -9.92 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.62 Total: -59.84 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.27 Total: -42.79 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 7.71 SS G_CDS: -1.30 Total: 6.40 kcal Total: -64.62 6.19 -58.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858731.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.253 kcal (2) G-P(sol) polarization free energy of solvation -64.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds