Wall clock time and date at job start Mon Mar 30 2020 01:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47031 * 2 1 4 4 C 1.50706 * 109.47003 * 240.00338 * 2 1 3 5 5 H 1.07993 * 119.99613 * 240.00151 * 4 2 1 6 6 C 1.37873 * 119.99798 * 59.99649 * 4 2 1 7 7 N 1.31517 * 120.00489 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99971 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46967 * 90.00245 * 8 6 4 10 10 H 1.48500 * 109.47344 * 210.00426 * 8 6 4 11 11 H 1.48498 * 109.46895 * 330.00524 * 8 6 4 12 12 O 1.45193 * 109.47377 * 120.00590 * 2 1 3 13 13 C 1.34853 * 116.99829 * 270.00029 * 12 2 1 14 14 O 1.21583 * 119.99931 * 359.97438 * 13 12 2 15 15 C 1.46813 * 120.00033 * 179.72358 * 13 12 2 16 16 C 1.33765 * 124.64464 * 180.27331 * 15 13 12 17 17 C 1.40275 * 115.49722 * 180.02562 * 16 15 13 18 18 C 1.41659 * 129.13801 * 179.97438 * 17 16 15 19 19 C 1.36520 * 118.85544 * 180.02562 * 18 17 16 20 20 C 1.38769 * 119.72328 * 359.97438 * 19 18 17 21 21 N 1.31288 * 121.08699 * 0.02969 * 20 19 18 22 22 C 1.33438 * 121.97572 * 359.96847 * 21 20 19 23 23 S 1.75469 * 124.64539 * 359.97243 * 15 13 12 24 24 H 1.09005 * 109.46751 * 299.99986 * 1 2 3 25 25 H 1.09004 * 109.47250 * 59.99305 * 1 2 3 26 26 H 1.08997 * 109.47292 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00186 * 179.97438 * 7 6 4 28 28 H 1.08000 * 122.25147 * 0.02562 * 16 15 13 29 29 H 1.08004 * 120.57208 * 0.04504 * 18 17 16 30 30 H 1.08004 * 120.13683 * 179.97438 * 19 18 17 31 31 H 1.08003 * 119.46029 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 1.3446 -2.1613 -4.4125 10 1 2.4872 -0.1399 -5.1121 11 1 3.6307 -1.7564 -3.7121 12 8 2.0141 -0.6846 1.1854 13 6 2.2181 0.0673 2.2861 14 8 1.9978 1.2626 2.2552 15 6 2.7011 -0.5583 3.5233 16 6 2.9296 0.0960 4.6674 17 6 3.3901 -0.6924 5.7323 18 6 3.7201 -0.3048 7.0543 19 6 4.1535 -1.2571 7.9313 20 6 4.2618 -2.5767 7.5159 21 7 3.9543 -2.9286 6.2890 22 6 3.5252 -2.0441 5.3867 23 16 3.0506 -2.2682 3.7059 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7094 1.1619 -3.4844 28 1 2.7702 1.1597 4.7647 29 1 3.6299 0.7262 7.3632 30 1 4.4110 -0.9845 8.9441 31 1 4.6048 -3.3267 8.2133 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835158456.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:48 Heat of formation + Delta-G solvation = -33.515777 kcal Electronic energy + Delta-G solvation = -17992.753434 eV Core-core repulsion = 14944.768421 eV Total energy + Delta-G solvation = -3047.985013 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.57925 -39.52696 -36.40193 -35.39752 -33.31504 -32.59415 -30.32150 -29.38764 -25.51086 -25.25287 -24.37882 -22.51645 -20.83556 -19.89260 -18.50368 -17.35072 -16.84885 -16.35885 -15.72856 -15.44838 -15.27277 -15.01251 -14.56313 -14.50322 -13.43482 -13.27550 -12.87489 -12.56232 -12.37017 -12.07774 -11.73021 -11.27075 -11.12118 -11.02514 -10.87475 -10.58933 -10.44333 -10.31906 -10.00039 -9.69039 -9.64524 -8.98087 -8.88376 -8.53161 -8.13906 -6.22135 -4.29370 0.03858 0.84422 1.11208 1.78360 1.80913 3.22513 3.23885 3.25946 3.30639 3.40618 3.48739 4.22440 4.30075 4.41525 4.63768 4.66211 4.99286 5.11206 5.23586 5.39119 5.47858 5.73649 5.89352 6.00992 6.26389 6.55816 6.82766 6.84042 7.02117 7.49488 7.51782 7.65409 7.83408 8.06645 8.44910 8.79836 9.36081 10.85395 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.038373 B = 0.003940 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.506481 B = 7104.352586 C = 7579.238731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.050 0.950 4 C -0.522 4.522 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.347 6.347 13 C 0.524 3.476 14 O -0.501 6.501 15 C -0.195 4.195 16 C -0.050 4.050 17 C -0.134 4.134 18 C -0.022 4.022 19 C -0.183 4.183 20 C 0.140 3.860 21 N -0.457 5.457 22 C 0.042 3.958 23 S 0.235 5.765 24 H 0.017 0.983 25 H 0.102 0.898 26 H 0.039 0.961 27 H 0.267 0.733 28 H 0.159 0.841 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.118 -3.923 19.250 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.164 3.836 3 H 0.068 0.932 4 C -0.560 4.560 5 H 0.089 0.911 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.195 1.195 12 O -0.263 6.263 13 C 0.366 3.634 14 O -0.392 6.392 15 C -0.312 4.312 16 C -0.082 4.082 17 C -0.146 4.146 18 C -0.050 4.050 19 C -0.205 4.205 20 C -0.032 4.032 21 N -0.167 5.167 22 C -0.201 4.201 23 S 0.502 5.498 24 H 0.036 0.964 25 H 0.120 0.880 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.177 0.823 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.879 -5.564 17.586 19.080 hybrid contribution 0.198 1.843 0.398 1.896 sum 5.078 -3.721 17.984 19.054 Atomic orbital electron populations 1.22188 0.97275 1.00355 1.01578 1.20767 0.91572 0.94023 0.77190 0.93247 1.21011 1.32708 1.13621 0.88696 0.91135 1.24883 0.94867 0.95066 0.99077 1.69894 1.36006 1.22461 1.24300 0.86247 0.79369 0.79126 0.81261 1.20282 1.20934 1.19542 1.86598 1.75750 1.42997 1.20988 1.19617 0.75178 0.85040 0.83579 1.90831 1.48497 1.15485 1.84366 1.23193 1.11699 0.99010 0.97345 1.20056 0.96705 1.01761 0.89642 1.18975 1.05845 0.93667 0.96068 1.21266 0.92826 1.00485 0.90401 1.21688 1.03139 0.94388 1.01326 1.22912 0.93548 0.95241 0.91527 1.67298 1.11341 1.36045 1.02012 1.24257 1.02711 0.92391 1.00779 1.84824 1.63741 1.02339 0.98884 0.96407 0.88009 0.94225 0.92311 0.82334 0.84047 0.84002 0.81723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 9.33 37.16 0.35 -3.61 16 2 C 0.22 5.81 2.57 -27.88 -0.07 5.74 16 3 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 4 C -0.52 -14.63 8.90 -34.44 -0.31 -14.94 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 O -0.35 -8.36 9.68 -40.91 -0.40 -8.76 16 13 C 0.52 11.33 7.91 34.20 0.27 11.60 16 14 O -0.50 -11.82 15.98 -19.33 -0.31 -12.13 16 15 C -0.19 -3.36 6.31 -37.69 -0.24 -3.60 16 16 C -0.05 -0.71 9.80 -40.39 -0.40 -1.11 16 17 C -0.13 -1.72 5.88 -107.10 -0.63 -2.35 16 18 C -0.02 -0.20 10.16 -38.90 -0.40 -0.60 16 19 C -0.18 -1.39 10.01 -40.01 -0.40 -1.79 16 20 C 0.14 1.27 11.18 -17.59 -0.20 1.07 16 21 N -0.46 -5.93 10.39 -11.64 -0.12 -6.05 16 22 C 0.04 0.60 7.66 -16.13 -0.12 0.47 16 23 S 0.24 3.65 23.05 -107.50 -2.48 1.17 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 28 H 0.16 2.06 7.96 -52.49 -0.42 1.64 16 29 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 30 H 0.14 0.58 8.06 -52.48 -0.42 0.15 16 31 H 0.17 0.89 8.06 -52.48 -0.42 0.46 16 LS Contribution 294.05 15.07 4.43 4.43 Total: -1.00 -31.63 294.05 -8.26 -39.89 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -2.76 Total: -2.63 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.23 Total: -7.47 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 0.51 Total: -30.51 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.70 Total: -20.89 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -2.48 Total: 1.17 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.63 -8.26 -39.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835158456.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.376 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds