Wall clock time and date at job start Mon Mar 30 2020 01:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47031 * 2 1 4 4 C 1.50706 * 109.47003 * 240.00338 * 2 1 3 5 5 H 1.07993 * 119.99613 * 240.00151 * 4 2 1 6 6 C 1.37873 * 119.99798 * 59.99649 * 4 2 1 7 7 N 1.31517 * 120.00489 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99971 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46967 * 90.00245 * 8 6 4 10 10 H 1.48500 * 109.47344 * 210.00426 * 8 6 4 11 11 H 1.48498 * 109.46895 * 330.00524 * 8 6 4 12 12 O 1.45193 * 109.47377 * 120.00590 * 2 1 3 13 13 C 1.34853 * 116.99829 * 270.00029 * 12 2 1 14 14 O 1.21583 * 119.99931 * 359.97438 * 13 12 2 15 15 C 1.46813 * 120.00033 * 179.72358 * 13 12 2 16 16 C 1.33765 * 124.64464 * 180.27331 * 15 13 12 17 17 C 1.40275 * 115.49722 * 180.02562 * 16 15 13 18 18 C 1.41659 * 129.13801 * 179.97438 * 17 16 15 19 19 C 1.36520 * 118.85544 * 180.02562 * 18 17 16 20 20 C 1.38769 * 119.72328 * 359.97438 * 19 18 17 21 21 N 1.31288 * 121.08699 * 0.02969 * 20 19 18 22 22 C 1.33438 * 121.97572 * 359.96847 * 21 20 19 23 23 S 1.75469 * 124.64539 * 359.97243 * 15 13 12 24 24 H 1.09005 * 109.46751 * 299.99986 * 1 2 3 25 25 H 1.09004 * 109.47250 * 59.99305 * 1 2 3 26 26 H 1.08997 * 109.47292 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00186 * 179.97438 * 7 6 4 28 28 H 1.08000 * 122.25147 * 0.02562 * 16 15 13 29 29 H 1.08004 * 120.57208 * 0.04504 * 18 17 16 30 30 H 1.08004 * 120.13683 * 179.97438 * 19 18 17 31 31 H 1.08003 * 119.46029 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 1.3446 -2.1613 -4.4125 10 1 2.4872 -0.1399 -5.1121 11 1 3.6307 -1.7564 -3.7121 12 8 2.0141 -0.6846 1.1854 13 6 2.2181 0.0673 2.2861 14 8 1.9978 1.2626 2.2552 15 6 2.7011 -0.5583 3.5233 16 6 2.9296 0.0960 4.6674 17 6 3.3901 -0.6924 5.7323 18 6 3.7201 -0.3048 7.0543 19 6 4.1535 -1.2571 7.9313 20 6 4.2618 -2.5767 7.5159 21 7 3.9543 -2.9286 6.2890 22 6 3.5252 -2.0441 5.3867 23 16 3.0506 -2.2682 3.7059 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7094 1.1619 -3.4844 28 1 2.7702 1.1597 4.7647 29 1 3.6299 0.7262 7.3632 30 1 4.4110 -0.9845 8.9441 31 1 4.6048 -3.3267 8.2133 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835158456.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:47 Heat of formation + Delta-G solvation = -52.686802 kcal Electronic energy + Delta-G solvation = -17993.584752 eV Core-core repulsion = 14944.768421 eV Total energy + Delta-G solvation = -3048.816331 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.61366 -41.14946 -37.96857 -36.77881 -35.38609 -33.38969 -31.98082 -30.86561 -27.51270 -26.61507 -25.30105 -23.87389 -22.42011 -21.32446 -19.84608 -18.75202 -18.55773 -17.79967 -17.05932 -16.93268 -16.64845 -16.30447 -16.02966 -15.61261 -14.99686 -14.38792 -14.17591 -14.10942 -13.90011 -13.33405 -13.27620 -13.07723 -12.86070 -12.81437 -12.44929 -12.20767 -12.18191 -11.76644 -11.65978 -11.40335 -11.06911 -10.63482 -10.53424 -9.91452 -9.23401 -8.32027 -6.49194 -1.02599 0.00728 0.05177 0.68709 0.69490 1.40449 1.43135 1.53407 1.70199 1.74903 2.37623 2.64702 2.98799 3.40523 3.53882 3.64635 3.81330 4.00763 4.26626 4.43793 4.47602 4.57304 4.73751 4.74454 4.78488 4.98104 5.05039 5.16545 5.42420 5.55098 5.57831 5.79885 5.96939 6.51093 6.67388 6.74610 7.21663 8.75983 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.038373 B = 0.003940 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.506481 B = 7104.352586 C = 7579.238731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.218 3.782 3 H 0.014 0.986 4 C -0.551 4.551 5 H 0.067 0.933 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.984 3.016 9 H -0.266 1.266 10 H -0.275 1.275 11 H -0.266 1.266 12 O -0.356 6.356 13 C 0.524 3.476 14 O -0.533 6.533 15 C -0.238 4.238 16 C -0.013 4.013 17 C -0.156 4.156 18 C -0.016 4.016 19 C -0.165 4.165 20 C 0.151 3.849 21 N -0.493 5.493 22 C 0.040 3.960 23 S 0.197 5.803 24 H 0.025 0.975 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.273 0.727 28 H 0.172 0.828 29 H 0.177 0.823 30 H 0.192 0.808 31 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 -4.537 22.181 23.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.032 0.968 4 C -0.589 4.589 5 H 0.085 0.915 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.807 3.193 9 H -0.191 1.191 10 H -0.200 1.200 11 H -0.191 1.191 12 O -0.272 6.272 13 C 0.368 3.632 14 O -0.425 6.425 15 C -0.355 4.355 16 C -0.046 4.046 17 C -0.167 4.167 18 C -0.043 4.043 19 C -0.187 4.187 20 C -0.021 4.021 21 N -0.204 5.204 22 C -0.203 4.203 23 S 0.464 5.536 24 H 0.044 0.956 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.189 0.811 29 H 0.194 0.806 30 H 0.209 0.791 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 6.122 -6.183 20.547 22.313 hybrid contribution -0.082 2.025 -0.136 2.032 sum 6.040 -4.157 20.411 21.688 Atomic orbital electron populations 1.22012 0.96419 1.00574 1.01111 1.20496 0.92266 0.92309 0.78416 0.96819 1.21267 1.33719 1.14048 0.89828 0.91519 1.25816 0.94619 0.95630 1.02038 1.70004 1.36419 1.23469 1.25387 0.85168 0.79002 0.78157 0.77010 1.19099 1.20028 1.19082 1.86580 1.76263 1.43127 1.21236 1.20223 0.74177 0.84803 0.83956 1.90790 1.50214 1.16611 1.84925 1.22717 1.16410 1.00038 0.96349 1.20337 0.93070 1.02284 0.88949 1.19137 1.07333 0.92761 0.97446 1.21775 0.91254 1.02791 0.88528 1.22251 1.00401 0.93021 1.03019 1.23803 0.90584 0.97287 0.90378 1.67324 1.13192 1.36440 1.03487 1.24114 1.03033 0.93258 0.99868 1.84713 1.65288 1.01758 1.01877 0.95595 0.89603 0.93519 0.91817 0.81111 0.80605 0.79102 0.77743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.57 9.33 71.98 0.67 -6.90 16 2 C 0.22 12.35 2.57 29.85 0.08 12.42 16 3 H 0.01 0.87 7.16 -2.38 -0.02 0.86 16 4 C -0.55 -32.02 8.90 25.60 0.23 -31.80 16 5 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.92 -52.84 11.32 21.45 0.24 -52.60 16 8 Si 0.98 43.40 29.54 68.60 2.03 45.43 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 O -0.36 -18.21 9.68 -57.66 -0.56 -18.76 16 13 C 0.52 24.02 7.91 70.06 0.55 24.58 16 14 O -0.53 -26.59 15.98 19.56 0.31 -26.27 16 15 C -0.24 -8.59 6.31 23.50 0.15 -8.44 16 16 C -0.01 -0.38 9.80 21.75 0.21 -0.17 16 17 C -0.16 -3.71 5.88 -21.47 -0.13 -3.83 16 18 C -0.02 -0.22 10.16 22.71 0.23 0.01 16 19 C -0.17 -1.53 10.01 21.99 0.22 -1.31 16 20 C 0.15 2.03 11.18 84.90 0.95 2.98 16 21 N -0.49 -11.72 10.39 -190.74 -1.98 -13.70 16 22 C 0.04 1.11 7.66 84.92 0.65 1.76 16 23 S 0.20 6.42 23.05 -56.49 -1.30 5.12 16 24 H 0.02 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.09 4.80 6.07 -2.38 -0.01 4.78 16 26 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.17 4.30 7.96 -2.91 -0.02 4.28 16 29 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 30 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 31 H 0.21 1.00 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -73.14 294.05 4.17 -68.97 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: 1.16 Total: 1.01 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 4.26 Total: -9.20 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -1.74 Total: -66.30 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.25 Total: -45.04 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -1.30 Total: 5.12 kcal Total: -73.14 4.17 -68.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835158456.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.284 kcal (2) G-P(sol) polarization free energy of solvation -73.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds