Wall clock time and date at job start Mon Mar 30 2020 01:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47188 * 2 1 4 4 C 1.50696 * 109.47104 * 120.00005 * 2 1 3 5 5 H 1.08006 * 119.99719 * 120.00257 * 4 2 1 6 6 C 1.37873 * 120.00489 * 300.00206 * 4 2 1 7 7 N 1.31521 * 119.99662 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00319 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47160 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47217 * 119.99995 * 8 6 4 11 11 H 1.48505 * 109.46793 * 239.99741 * 8 6 4 12 12 O 1.45204 * 109.46986 * 240.00155 * 2 1 3 13 13 C 1.34816 * 116.99811 * 89.99958 * 12 2 1 14 14 O 1.21547 * 120.00178 * 359.97438 * 13 12 2 15 15 C 1.47035 * 120.00044 * 179.97438 * 13 12 2 16 16 C 1.33867 * 124.65877 * 179.97438 * 15 13 12 17 17 C 1.40071 * 115.49152 * 179.75255 * 16 15 13 18 18 C 1.41735 * 129.97782 * 179.61860 * 17 16 15 19 19 C 1.36039 * 119.33525 * 180.30922 * 18 17 16 20 20 N 1.32307 * 121.57999 * 0.30284 * 19 18 17 21 21 C 1.31351 * 122.06519 * 359.97224 * 20 19 18 22 22 C 1.39749 * 120.59624 * 359.97438 * 21 20 19 23 23 S 1.75543 * 124.65295 * 359.97438 * 15 13 12 24 24 H 1.08998 * 109.46750 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46686 * 300.00025 * 1 2 3 26 26 H 1.08999 * 109.47212 * 59.99717 * 1 2 3 27 27 H 0.97000 * 119.99940 * 180.02562 * 7 6 4 28 28 H 1.08000 * 122.25226 * 359.97438 * 16 15 13 29 29 H 1.08002 * 120.33594 * 0.59035 * 18 17 16 30 30 H 1.07994 * 119.21068 * 180.27300 * 19 18 17 31 31 H 1.07994 * 119.70279 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.1475 -2.2864 3.6037 10 1 3.1473 -0.1859 4.8160 11 1 1.1678 -1.5867 4.8164 12 8 2.0140 -0.6845 -1.1856 13 6 2.2180 0.0674 -2.2859 14 8 1.9969 1.2621 -2.2552 15 6 2.7080 -0.5580 -3.5232 16 6 2.9417 0.0976 -4.6667 17 6 3.4117 -0.6881 -5.7268 18 6 3.7468 -0.3204 -7.0540 19 6 4.1825 -1.2747 -7.9201 20 7 4.2960 -2.5415 -7.5556 21 6 3.9965 -2.9476 -6.3428 22 6 3.5413 -2.0414 -5.3813 23 16 3.0667 -2.2669 -3.7036 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.7095 1.1617 3.4844 28 1 2.7822 1.1613 -4.7642 29 1 3.6614 0.7078 -7.3732 30 1 4.4415 -0.9915 -8.9296 31 1 4.1039 -3.9911 -6.0862 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835160335.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:57 Heat of formation + Delta-G solvation = -49.992967 kcal Electronic energy + Delta-G solvation = -17987.846666 eV Core-core repulsion = 14939.147149 eV Total energy + Delta-G solvation = -3048.699517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.64824 -41.18520 -38.04899 -37.02144 -35.39420 -32.51123 -32.15387 -31.31948 -27.52250 -26.84079 -25.17947 -23.91351 -22.44887 -21.32745 -19.90273 -18.77737 -18.24755 -17.75598 -17.30826 -17.03750 -16.88866 -16.22788 -15.58811 -15.47384 -15.03088 -14.92729 -14.35576 -14.21061 -13.97041 -13.39680 -13.14416 -13.05345 -12.92965 -12.84521 -12.44244 -12.17788 -12.00441 -11.78326 -11.67798 -11.06088 -11.03190 -10.76657 -10.64535 -10.30586 -9.00923 -8.32283 -6.49370 -1.09268 -0.04357 0.12957 0.67187 0.68168 1.40974 1.42226 1.54690 1.67672 1.70926 2.37346 2.68429 2.98934 3.39780 3.54127 3.57650 3.76712 3.82296 4.27429 4.40837 4.45184 4.54660 4.66175 4.73145 4.76221 4.90380 5.01124 5.07726 5.42346 5.53587 5.54647 5.79256 5.96157 6.50292 6.72721 6.83919 7.21641 8.75914 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.038278 B = 0.003926 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.321726 B = 7131.104078 C = 7607.021679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.218 3.782 3 H 0.013 0.987 4 C -0.549 4.549 5 H 0.069 0.931 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.984 3.016 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.271 1.271 12 O -0.353 6.353 13 C 0.520 3.480 14 O -0.532 6.532 15 C -0.219 4.219 16 C -0.034 4.034 17 C -0.066 4.066 18 C -0.108 4.108 19 C 0.074 3.926 20 N -0.478 5.478 21 C 0.156 3.844 22 C -0.210 4.210 23 S 0.212 5.788 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.024 0.976 27 H 0.272 0.728 28 H 0.168 0.832 29 H 0.174 0.826 30 H 0.195 0.805 31 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.553 -5.782 -18.531 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.165 3.835 3 H 0.031 0.969 4 C -0.587 4.587 5 H 0.087 0.913 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.807 3.193 9 H -0.187 1.187 10 H -0.201 1.201 11 H -0.196 1.196 12 O -0.269 6.269 13 C 0.364 3.636 14 O -0.424 6.424 15 C -0.338 4.338 16 C -0.067 4.067 17 C -0.081 4.081 18 C -0.129 4.129 19 C -0.075 4.075 20 N -0.187 5.187 21 C -0.014 4.014 22 C -0.329 4.329 23 S 0.479 5.521 24 H 0.066 0.934 25 H 0.103 0.897 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.186 0.814 29 H 0.191 0.809 30 H 0.212 0.788 31 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.586 -7.114 -17.962 20.111 hybrid contribution -0.323 2.058 0.888 2.265 sum 5.263 -5.056 -17.074 18.568 Atomic orbital electron populations 1.22014 0.96414 1.00654 1.01079 1.20506 0.92266 0.92295 0.78405 0.96908 1.21294 1.33614 1.14040 0.89707 0.91324 1.25823 0.94621 0.95642 1.02089 1.70015 1.36460 1.23549 1.25323 0.85115 0.78392 0.78426 0.77368 1.18706 1.20058 1.19564 1.86566 1.76191 1.43047 1.21141 1.20338 0.74311 0.84833 0.84077 1.90793 1.49962 1.16791 1.84871 1.22977 1.13941 1.00917 0.95932 1.20356 0.94797 1.02437 0.89154 1.18431 1.01852 0.91758 0.96074 1.22155 0.97384 1.03440 0.89938 1.22751 0.95913 0.87298 1.01547 1.67788 1.14374 1.19445 1.17137 1.22730 0.92484 0.99812 0.86416 1.24524 1.08454 0.99162 1.00758 1.84487 1.64195 1.01165 1.02206 0.93363 0.89675 0.95649 0.91853 0.81440 0.80905 0.78811 0.79524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.42 9.33 71.98 0.67 -6.75 16 2 C 0.22 12.03 2.56 29.85 0.08 12.11 16 3 H 0.01 0.80 7.16 -2.39 -0.02 0.79 16 4 C -0.55 -31.09 8.90 25.60 0.23 -30.86 16 5 H 0.07 3.81 7.81 -2.91 -0.02 3.79 16 6 C 0.02 0.99 5.30 84.65 0.45 1.44 16 7 N -0.92 -52.10 11.32 21.45 0.24 -51.86 16 8 Si 0.98 42.50 29.54 68.60 2.03 44.53 16 9 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 10 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 12 O -0.35 -17.34 9.68 -57.28 -0.55 -17.89 16 13 C 0.52 22.91 7.92 70.13 0.56 23.46 16 14 O -0.53 -25.95 15.99 19.68 0.31 -25.64 16 15 C -0.22 -7.37 6.33 23.58 0.15 -7.22 16 16 C -0.03 -0.93 9.81 21.72 0.21 -0.72 16 17 C -0.07 -1.49 5.91 -21.48 -0.13 -1.62 16 18 C -0.11 -1.68 10.13 22.62 0.23 -1.45 16 19 C 0.07 1.09 11.06 84.11 0.93 2.02 16 20 N -0.48 -9.04 10.34 -196.34 -2.03 -11.07 16 21 C 0.16 2.96 11.24 85.13 0.96 3.92 16 22 C -0.21 -4.80 6.54 23.13 0.15 -4.65 16 23 S 0.21 5.81 23.05 -56.49 -1.30 4.51 16 24 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.08 4.68 6.07 -2.39 -0.01 4.66 16 26 H 0.02 1.20 8.14 -2.39 -0.02 1.19 16 27 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.17 4.17 7.96 -2.91 -0.02 4.15 16 29 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.19 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -67.80 294.04 4.34 -63.46 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.16 Total: 4.28 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 4.48 Total: -10.32 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -1.79 Total: -62.93 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.24 Total: -43.53 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 5.81 SS G_CDS: -1.30 Total: 4.51 kcal Total: -67.80 4.34 -63.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835160335.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.463 kcal (2) G-P(sol) polarization free energy of solvation -67.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds