Wall clock time and date at job start Mon Mar 30 2020 01:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 114.00060 * 2 1 4 4 C 1.52999 * 109.47093 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46903 * 64.99899 * 4 3 2 6 6 C 1.36934 * 119.99814 * 89.99885 * 5 4 3 7 7 H 1.08005 * 120.00492 * 326.08854 * 6 5 4 8 8 C 1.38812 * 119.99915 * 146.08822 * 6 5 4 9 9 N 1.31619 * 119.99915 * 336.59400 * 8 6 5 10 10 Si 1.86803 * 120.00331 * 156.59956 * 8 6 5 11 11 H 1.48500 * 109.47025 * 89.99739 * 10 8 6 12 12 H 1.48496 * 109.46976 * 209.99903 * 10 8 6 13 13 H 1.48496 * 109.46678 * 329.99679 * 10 8 6 14 14 C 1.46495 * 119.99990 * 269.99826 * 5 4 3 15 15 C 1.52999 * 109.47294 * 96.12056 * 14 5 4 16 16 Br 1.96595 * 115.55018 * 34.41498 * 15 14 5 17 17 C 1.53007 * 117.49603 * 248.74655 * 15 14 5 18 18 C 1.52997 * 117.49693 * 180.08898 * 15 14 5 19 19 H 1.09002 * 109.46545 * 180.02562 * 1 2 3 20 20 H 1.08990 * 109.47211 * 300.00690 * 1 2 3 21 21 H 1.08999 * 109.46728 * 60.00689 * 1 2 3 22 22 H 1.09005 * 109.47150 * 59.99225 * 3 2 1 23 23 H 1.09000 * 109.46880 * 299.99563 * 3 2 1 24 24 H 1.08998 * 109.46864 * 184.99690 * 4 3 2 25 25 H 1.08999 * 109.47084 * 304.99801 * 4 3 2 26 26 H 0.97006 * 120.00140 * 180.02562 * 9 8 6 27 27 H 1.09004 * 109.47162 * 216.11882 * 14 5 4 28 28 H 1.09000 * 109.47264 * 336.11697 * 14 5 4 29 29 H 1.08997 * 117.49972 * 359.97438 * 17 15 14 30 30 H 1.08998 * 117.49564 * 145.01978 * 17 15 14 31 31 H 1.09000 * 117.49746 * 214.97259 * 18 15 14 32 32 H 1.09003 * 117.50523 * 359.97305 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2679 1.3452 -2.3371 7 1 3.7120 2.2543 -2.5132 8 6 5.2777 0.9687 -3.2121 9 7 6.2393 0.1690 -2.8022 10 14 5.2719 1.5973 -4.9712 11 1 6.0261 2.8745 -5.0429 12 1 5.9132 0.5933 -5.8576 13 1 3.8718 1.8237 -5.4112 14 6 4.1063 -0.8925 -1.3403 15 6 2.8332 -1.4813 -1.9514 16 35 1.9572 -0.3722 -3.3179 17 6 1.9350 -2.3205 -1.0404 18 6 2.7712 -2.9998 -2.1278 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8898 21 1 -0.3633 0.5137 -0.8901 22 1 1.6886 1.8465 0.8900 23 1 1.6887 1.8463 -0.8900 24 1 3.9785 2.1765 0.0902 25 1 3.8508 0.5685 0.8427 26 1 6.9452 -0.0938 -3.4135 27 1 4.9607 -1.1434 -1.9689 28 1 4.2553 -1.3060 -0.3428 29 1 2.2512 -2.4535 -0.0058 30 1 0.8584 -2.2580 -1.1990 31 1 2.2443 -3.3839 -3.0013 32 1 3.6375 -3.5794 -1.8089 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846984498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:26 Heat of formation + Delta-G solvation = 12.717391 kcal Electronic energy + Delta-G solvation = -15711.030064 eV Core-core repulsion = 13141.269560 eV Total energy + Delta-G solvation = -2569.760504 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.042 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.65658 -36.45886 -34.68490 -31.42818 -28.77922 -28.46552 -26.25299 -25.50432 -23.21696 -21.79062 -20.43610 -18.95788 -16.67570 -15.63348 -15.38556 -14.92792 -14.47862 -14.25669 -13.42064 -13.31061 -12.99301 -11.93211 -11.53462 -11.40194 -11.35223 -11.04909 -10.88139 -10.68662 -10.56910 -10.17762 -10.11077 -9.88482 -9.57444 -9.41281 -8.92876 -8.64947 -8.29640 -8.12525 -6.51183 -5.64868 -3.16084 2.91763 3.45527 3.53993 3.60867 4.42721 4.54018 4.66036 5.31129 5.52670 5.60206 5.67419 5.69182 5.76870 5.83392 6.01730 6.14767 6.18714 6.26628 6.29966 6.44790 6.67118 6.68388 6.74420 6.84640 6.97256 7.73616 7.90489 7.96106 8.59738 9.29153 9.93699 10.48144 11.35042 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.011826 C = 0.010544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.619274 B = 2367.081346 C = 2654.854050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.041 3.959 4 C 0.149 3.851 5 N -0.568 5.568 6 C -0.231 4.231 7 H 0.057 0.943 8 C 0.016 3.984 9 N -0.893 5.893 10 Si 0.882 3.118 11 H -0.291 1.291 12 H -0.290 1.290 13 H -0.275 1.275 14 C 0.180 3.820 15 C -0.053 4.053 16 Br -0.122 7.122 17 C -0.139 4.139 18 C -0.189 4.189 19 H 0.072 0.928 20 H 0.024 0.976 21 H 0.033 0.967 22 H 0.023 0.977 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.252 0.748 27 H 0.107 0.893 28 H 0.036 0.964 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.541 -3.301 3.634 10.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.280 6.280 3 C -0.038 4.038 4 C 0.022 3.978 5 N -0.287 5.287 6 C -0.361 4.361 7 H 0.075 0.925 8 C -0.183 4.183 9 N -0.537 5.537 10 Si 0.712 3.288 11 H -0.218 1.218 12 H -0.217 1.217 13 H -0.200 1.200 14 C 0.052 3.948 15 C -0.133 4.133 16 Br -0.041 7.041 17 C -0.177 4.177 18 C -0.229 4.229 19 H 0.091 0.909 20 H 0.043 0.957 21 H 0.052 0.948 22 H 0.041 0.959 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.124 0.876 28 H 0.054 0.946 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.551 -3.104 3.077 10.504 hybrid contribution -0.265 0.271 -0.777 0.864 sum -9.816 -2.833 2.301 10.473 Atomic orbital electron populations 1.22567 0.83816 1.01219 0.98696 1.88054 1.17137 1.27826 1.95000 1.23394 0.98050 0.84422 0.97924 1.20903 0.89515 0.97757 0.89610 1.43609 1.76140 1.00708 1.08201 1.18787 1.10940 1.05681 1.00647 0.92509 1.24800 0.94587 0.99843 0.99030 1.69918 1.10971 1.38819 1.33990 0.86570 0.77938 0.77826 0.86461 1.21828 1.21658 1.20010 1.20716 0.93018 0.83618 0.97495 1.25991 1.01059 0.89699 0.96587 1.97101 1.79266 1.73705 1.54001 1.23029 0.96988 1.02206 0.95524 1.23325 1.03004 0.95225 1.01312 0.90926 0.95738 0.94820 0.95885 0.93551 0.91896 0.94225 0.93811 0.87555 0.94603 0.88895 0.89713 0.89384 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.45 101.05 1.06 1.54 16 2 O -0.36 -6.30 6.56 -35.23 -0.23 -6.53 16 3 C 0.04 0.74 6.28 37.16 0.23 0.98 16 4 C 0.15 3.04 6.11 -4.04 -0.02 3.01 16 5 N -0.57 -13.47 2.11 -173.24 -0.37 -13.83 16 6 C -0.23 -6.05 7.18 -15.06 -0.11 -6.15 16 7 H 0.06 1.53 7.93 -52.48 -0.42 1.11 16 8 C 0.02 0.44 4.99 -17.43 -0.09 0.35 16 9 N -0.89 -25.31 11.27 55.49 0.63 -24.68 16 10 Si 0.88 22.10 29.61 -169.99 -5.03 17.07 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.18 4.12 5.42 -4.04 -0.02 4.09 16 15 C -0.05 -1.07 1.86 -90.62 -0.17 -1.24 16 16 Br -0.12 -2.59 31.28 -68.01 -2.13 -4.72 16 17 C -0.14 -2.33 7.25 -26.69 -0.19 -2.53 16 18 C -0.19 -3.26 10.07 -26.69 -0.27 -3.53 16 19 H 0.07 0.93 7.24 -51.93 -0.38 0.55 16 20 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 21 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 25 H 0.04 0.78 7.85 -51.93 -0.41 0.37 16 26 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.11 2.81 5.33 -51.93 -0.28 2.54 16 28 H 0.04 0.79 7.58 -51.93 -0.39 0.40 16 29 H 0.09 1.53 8.03 -51.93 -0.42 1.11 16 30 H 0.08 1.35 6.85 -51.93 -0.36 1.00 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 277.78 15.07 4.19 4.19 Total: -1.00 -27.91 277.78 -7.26 -35.17 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -4.73 Total: -3.19 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 0.42 Total: -3.47 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.26 Total: -38.51 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.23 Total: -6.53 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Atomic # 35 Polarization: -2.59 SS G_CDS: -2.13 Total: -4.72 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.91 -7.26 -35.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846984498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.884 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds