Wall clock time and date at job start Mon Mar 30 2020 01:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 114.00060 * 2 1 4 4 C 1.52999 * 109.47093 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46903 * 64.99899 * 4 3 2 6 6 C 1.36934 * 119.99814 * 89.99885 * 5 4 3 7 7 H 1.08005 * 120.00492 * 326.08854 * 6 5 4 8 8 C 1.38812 * 119.99915 * 146.08822 * 6 5 4 9 9 N 1.31619 * 119.99915 * 336.59400 * 8 6 5 10 10 Si 1.86803 * 120.00331 * 156.59956 * 8 6 5 11 11 H 1.48500 * 109.47025 * 89.99739 * 10 8 6 12 12 H 1.48496 * 109.46976 * 209.99903 * 10 8 6 13 13 H 1.48496 * 109.46678 * 329.99679 * 10 8 6 14 14 C 1.46495 * 119.99990 * 269.99826 * 5 4 3 15 15 C 1.52999 * 109.47294 * 96.12056 * 14 5 4 16 16 Br 1.96595 * 115.55018 * 34.41498 * 15 14 5 17 17 C 1.53007 * 117.49603 * 248.74655 * 15 14 5 18 18 C 1.52997 * 117.49693 * 180.08898 * 15 14 5 19 19 H 1.09002 * 109.46545 * 180.02562 * 1 2 3 20 20 H 1.08990 * 109.47211 * 300.00690 * 1 2 3 21 21 H 1.08999 * 109.46728 * 60.00689 * 1 2 3 22 22 H 1.09005 * 109.47150 * 59.99225 * 3 2 1 23 23 H 1.09000 * 109.46880 * 299.99563 * 3 2 1 24 24 H 1.08998 * 109.46864 * 184.99690 * 4 3 2 25 25 H 1.08999 * 109.47084 * 304.99801 * 4 3 2 26 26 H 0.97006 * 120.00140 * 180.02562 * 9 8 6 27 27 H 1.09004 * 109.47162 * 216.11882 * 14 5 4 28 28 H 1.09000 * 109.47264 * 336.11697 * 14 5 4 29 29 H 1.08997 * 117.49972 * 359.97438 * 17 15 14 30 30 H 1.08998 * 117.49564 * 145.01978 * 17 15 14 31 31 H 1.09000 * 117.49746 * 214.97259 * 18 15 14 32 32 H 1.09003 * 117.50523 * 359.97305 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2679 1.3452 -2.3371 7 1 3.7120 2.2543 -2.5132 8 6 5.2777 0.9687 -3.2121 9 7 6.2393 0.1690 -2.8022 10 14 5.2719 1.5973 -4.9712 11 1 6.0261 2.8745 -5.0429 12 1 5.9132 0.5933 -5.8576 13 1 3.8718 1.8237 -5.4112 14 6 4.1063 -0.8925 -1.3403 15 6 2.8332 -1.4813 -1.9514 16 35 1.9572 -0.3722 -3.3179 17 6 1.9350 -2.3205 -1.0404 18 6 2.7712 -2.9998 -2.1278 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8898 21 1 -0.3633 0.5137 -0.8901 22 1 1.6886 1.8465 0.8900 23 1 1.6887 1.8463 -0.8900 24 1 3.9785 2.1765 0.0902 25 1 3.8508 0.5685 0.8427 26 1 6.9452 -0.0938 -3.4135 27 1 4.9607 -1.1434 -1.9689 28 1 4.2553 -1.3060 -0.3428 29 1 2.2512 -2.4535 -0.0058 30 1 0.8584 -2.2580 -1.1990 31 1 2.2443 -3.3839 -3.0013 32 1 3.6375 -3.5794 -1.8089 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846984498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:26 Heat of formation + Delta-G solvation = -2.329135 kcal Electronic energy + Delta-G solvation = -15711.682530 eV Core-core repulsion = 13141.269560 eV Total energy + Delta-G solvation = -2570.412970 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.042 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.15921 -37.87154 -36.39713 -33.34686 -30.36587 -30.06789 -27.94251 -26.95500 -24.89505 -23.16429 -22.11951 -20.57462 -18.52495 -17.18269 -16.86505 -16.29686 -16.22398 -15.82794 -15.26599 -14.82461 -14.53798 -13.45762 -13.20185 -13.12052 -12.94491 -12.66416 -12.46298 -12.38027 -12.19799 -11.99460 -11.79680 -11.57630 -11.23980 -11.02719 -10.51252 -10.24177 -9.97575 -9.78616 -8.46110 -7.67116 -5.20503 1.35470 1.44472 1.50252 1.58824 2.60406 3.01741 3.24745 3.40253 3.78374 4.16138 4.24664 4.31607 4.53786 4.61918 4.69602 4.79153 4.82504 4.83796 4.94713 5.05431 5.10082 5.13938 5.18360 5.36148 5.39230 5.78883 5.89352 6.58001 6.61903 7.30627 7.99962 8.50585 9.27844 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.011826 C = 0.010544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.619274 B = 2367.081346 C = 2654.854050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.056 3.944 4 C 0.145 3.855 5 N -0.581 5.581 6 C -0.214 4.214 7 H 0.047 0.953 8 C -0.022 4.022 9 N -0.919 5.919 10 Si 0.918 3.082 11 H -0.290 1.290 12 H -0.297 1.297 13 H -0.275 1.275 14 C 0.186 3.814 15 C -0.080 4.080 16 Br -0.139 7.139 17 C -0.109 4.109 18 C -0.178 4.178 19 H 0.090 0.910 20 H 0.043 0.957 21 H 0.025 0.975 22 H 0.051 0.949 23 H 0.026 0.974 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.246 0.754 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.118 -3.905 4.596 12.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.023 4.023 4 C 0.019 3.981 5 N -0.300 5.300 6 C -0.344 4.344 7 H 0.064 0.936 8 C -0.218 4.218 9 N -0.565 5.565 10 Si 0.748 3.252 11 H -0.218 1.218 12 H -0.224 1.224 13 H -0.200 1.200 14 C 0.058 3.942 15 C -0.159 4.159 16 Br -0.058 7.058 17 C -0.147 4.147 18 C -0.217 4.217 19 H 0.108 0.892 20 H 0.062 0.938 21 H 0.043 0.957 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.158 -3.704 4.055 12.436 hybrid contribution 0.171 0.447 -0.988 1.098 sum -10.986 -3.257 3.067 11.862 Atomic orbital electron populations 1.22707 0.81953 1.02573 0.99198 1.88004 1.19061 1.27241 1.95122 1.23050 0.96076 0.84944 0.98240 1.21016 0.91310 0.97393 0.88379 1.43754 1.76408 1.01079 1.08755 1.18782 1.09498 1.05067 1.01094 0.93573 1.25155 0.94922 1.00835 1.00912 1.70022 1.11677 1.40513 1.34311 0.85991 0.77617 0.77210 0.84344 1.21774 1.22379 1.19991 1.20470 0.93312 0.83369 0.97081 1.25729 1.01220 0.90869 0.98113 1.97081 1.79244 1.74501 1.54939 1.23019 0.97208 0.98987 0.95454 1.23425 1.03442 0.92928 1.01930 0.89179 0.93836 0.95672 0.93099 0.95585 0.92353 0.93440 0.94461 0.91118 0.94165 0.88085 0.88413 0.88379 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.45 113.37 1.18 2.00 16 2 O -0.38 -12.00 6.56 -148.98 -0.98 -12.98 16 3 C 0.06 1.90 6.28 71.98 0.45 2.35 16 4 C 0.15 5.72 6.11 86.38 0.53 6.25 16 5 N -0.58 -27.20 2.11 -702.01 -1.48 -28.68 16 6 C -0.21 -11.18 7.18 84.03 0.60 -10.58 16 7 H 0.05 2.50 7.93 -2.91 -0.02 2.47 16 8 C -0.02 -1.22 4.99 84.86 0.42 -0.80 16 9 N -0.92 -52.82 11.27 21.65 0.24 -52.58 16 10 Si 0.92 45.59 29.61 68.60 2.03 47.62 16 11 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 12 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 13 H -0.27 -13.47 7.11 99.48 0.71 -12.77 16 14 C 0.19 8.37 5.42 86.38 0.47 8.84 16 15 C -0.08 -3.07 1.86 -10.79 -0.02 -3.09 16 16 Br -0.14 -5.73 31.28 -20.37 -0.64 -6.37 16 17 C -0.11 -3.29 7.25 30.62 0.22 -3.07 16 18 C -0.18 -5.69 10.07 30.62 0.31 -5.38 16 19 H 0.09 1.95 7.24 -2.39 -0.02 1.93 16 20 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 21 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 23 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 2.31 8.04 -2.39 -0.02 2.29 16 25 H 0.05 1.79 7.85 -2.39 -0.02 1.77 16 26 H 0.25 13.94 8.31 -92.70 -0.77 13.17 16 27 H 0.07 3.77 5.33 -2.38 -0.01 3.76 16 28 H 0.04 1.73 7.58 -2.39 -0.02 1.71 16 29 H 0.10 2.95 8.03 -2.39 -0.02 2.93 16 30 H 0.10 2.74 6.85 -2.39 -0.02 2.73 16 31 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -58.73 277.78 4.44 -54.29 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 1.09 Total: 2.18 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 4.17 Total: -3.49 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -1.24 Total: -81.26 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.98 Total: -12.98 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 35 Polarization: -5.73 SS G_CDS: -0.64 Total: -6.37 kcal Total: -58.73 4.44 -54.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846984498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.963 kcal (2) G-P(sol) polarization free energy of solvation -58.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds