Wall clock time and date at job start Mon Mar 30 2020 01:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99651 * 2 1 4 4 H 1.48501 * 109.46763 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47037 * 299.99490 * 3 2 1 6 6 H 1.48491 * 109.47269 * 59.99949 * 3 2 1 7 7 C 1.37874 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99356 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47382 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.47568 * 180.02562 * 10 9 7 12 12 C 1.34734 * 116.99949 * 180.02562 * 11 10 9 13 13 O 1.21492 * 120.00611 * 359.97438 * 12 11 10 14 14 C 1.47534 * 119.99757 * 180.02562 * 12 11 10 15 15 C 1.40214 * 119.85835 * 0.02562 * 14 12 11 16 16 C 1.36164 * 119.99643 * 179.97438 * 15 14 12 17 17 C 1.39665 * 120.51327 * 0.02562 * 16 15 14 18 18 S 1.76243 * 131.16600 * 179.97438 * 17 16 15 19 19 C 1.75798 * 90.40278 * 180.02562 * 18 17 16 20 20 N 1.27988 * 110.49105 * 0.02562 * 19 18 17 21 21 C 1.34743 * 118.11156 * 359.97438 * 20 19 18 22 22 C 1.38705 * 119.85677 * 179.97438 * 14 12 11 23 23 H 0.96998 * 119.99875 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47089 * 60.00065 * 9 7 2 25 25 H 1.08997 * 109.47738 * 299.99987 * 9 7 2 26 26 H 1.09000 * 109.46860 * 60.00042 * 10 9 7 27 27 H 1.09000 * 109.47273 * 300.00624 * 10 9 7 28 28 H 1.07999 * 119.99995 * 0.02562 * 15 14 12 29 29 H 1.08001 * 119.74103 * 180.28350 * 16 15 14 30 30 H 1.08003 * 124.75626 * 180.02562 * 19 18 17 31 31 H 1.08002 * 119.91805 * 0.04262 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5194 -4.9195 -0.0001 12 6 2.2533 -6.0495 0.0004 13 8 3.4665 -5.9859 0.0008 14 6 1.5835 -7.3640 -0.0008 15 6 0.1831 -7.4340 -0.0029 16 6 -0.4379 -8.6457 -0.0045 17 6 0.3094 -9.8256 -0.0035 18 16 -0.1907 -11.5156 -0.0044 19 6 1.4915 -12.0262 -0.0012 20 7 2.2684 -11.0092 0.0009 21 6 1.7095 -9.7832 -0.0003 22 6 2.3419 -8.5254 -0.0008 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 2.8720 -3.6042 0.8905 27 1 2.8721 -3.6042 -0.8894 28 1 -0.4029 -6.5268 -0.0041 29 1 -1.5168 -8.6948 -0.0107 30 1 1.8229 -13.0542 -0.0009 31 1 3.4202 -8.4646 0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910200388.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:39 Heat of formation + Delta-G solvation = -36.678387 kcal Electronic energy + Delta-G solvation = -17560.778868 eV Core-core repulsion = 14512.656714 eV Total energy + Delta-G solvation = -3048.122154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80317 -39.72671 -37.05743 -36.10893 -33.38029 -31.60465 -30.69350 -29.98718 -25.72825 -25.18302 -23.95259 -22.34367 -21.08647 -20.40678 -18.91765 -17.53007 -16.79214 -16.35855 -16.19835 -16.02165 -15.67741 -15.00079 -14.58500 -14.25010 -14.23800 -13.68216 -13.40602 -12.76583 -12.39575 -12.28965 -12.12942 -11.38512 -11.29098 -11.06444 -10.81110 -10.73659 -10.46821 -10.37790 -10.06470 -9.70330 -9.68316 -9.31809 -9.08147 -8.50979 -8.46960 -6.13181 -4.17424 0.03229 0.41887 0.86141 1.28044 1.92069 2.61720 2.90175 3.26284 3.33894 3.38767 3.51537 3.70177 4.23585 4.36836 4.73335 4.77323 4.78629 4.90911 5.23803 5.25776 5.51755 5.69438 5.84260 5.99734 6.04007 6.05136 6.24398 6.59032 6.85131 7.15833 7.51739 7.58405 7.82985 8.07852 8.21054 8.88294 9.47293 10.98367 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.052633 B = 0.002915 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.856772 B = 9602.858385 C =10114.269495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.349 6.349 12 C 0.503 3.497 13 O -0.509 6.509 14 C -0.104 4.104 15 C -0.042 4.042 16 C -0.087 4.087 17 C -0.140 4.140 18 S 0.047 5.953 19 C 0.099 3.901 20 N -0.453 5.453 21 C 0.058 3.942 22 C 0.006 3.994 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.158 0.842 29 H 0.141 0.859 30 H 0.211 0.789 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 -23.877 -0.016 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.265 6.265 12 C 0.347 3.653 13 O -0.399 6.399 14 C -0.108 4.108 15 C -0.064 4.064 16 C -0.110 4.110 17 C -0.260 4.260 18 S 0.300 5.700 19 C -0.208 4.208 20 N -0.163 5.163 21 C -0.061 4.061 22 C -0.015 4.015 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.175 0.825 29 H 0.158 0.842 30 H 0.227 0.773 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.441 -24.368 -0.016 24.490 hybrid contribution 0.955 1.614 0.001 1.875 sum -1.486 -22.754 -0.015 22.803 Atomic orbital electron populations 1.69980 1.06090 1.26919 1.49849 1.24982 0.94923 0.99413 0.94835 0.86413 0.80074 0.83116 0.77713 1.19571 1.20817 1.20822 1.21009 0.93249 0.90052 1.52112 0.92161 1.19184 0.94190 0.88950 0.98948 1.23729 0.96479 0.78249 1.01227 1.86563 1.41882 1.15550 1.82549 1.20822 0.85608 0.85392 0.73504 1.90824 1.14920 1.88296 1.45878 1.19031 0.93942 0.90804 1.07027 1.21301 0.93282 0.98638 0.93194 1.20083 1.00139 0.89161 1.01609 1.23962 0.97107 0.98183 1.06702 1.85131 1.12225 0.97238 1.75453 1.28996 0.90096 1.01839 0.99857 1.66142 1.37820 0.97809 1.14514 1.18992 0.88793 0.91714 1.06559 1.20813 1.01173 0.87402 0.92115 0.92742 0.95269 0.95260 0.92048 0.92054 0.82474 0.84165 0.77268 0.83030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -14.61 9.11 -34.45 -0.31 -14.92 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.02 0.62 5.35 -27.89 -0.15 0.47 16 10 C 0.08 1.64 5.41 37.16 0.20 1.85 16 11 O -0.35 -6.77 9.45 -40.58 -0.38 -7.15 16 12 C 0.50 8.89 7.89 34.52 0.27 9.16 16 13 O -0.51 -10.13 16.09 -19.26 -0.31 -10.44 16 14 C -0.10 -1.47 5.85 -105.19 -0.62 -2.09 16 15 C -0.04 -0.50 9.55 -39.59 -0.38 -0.88 16 16 C -0.09 -0.89 9.99 -39.79 -0.40 -1.28 16 17 C -0.14 -1.53 6.55 -38.36 -0.25 -1.78 16 18 S 0.05 0.37 23.39 -107.50 -2.51 -2.14 16 19 C 0.10 0.76 12.40 51.16 0.63 1.39 16 20 N -0.45 -5.16 10.56 -11.64 -0.12 -5.28 16 21 C 0.06 0.72 6.94 -84.94 -0.59 0.13 16 22 C 0.01 0.08 9.65 -38.45 -0.37 -0.30 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.16 1.75 7.59 -52.49 -0.40 1.36 16 29 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.21 0.68 8.06 -52.48 -0.42 0.26 16 31 H 0.15 2.04 7.60 -52.49 -0.40 1.64 16 LS Contribution 297.68 15.07 4.49 4.49 Total: -1.00 -31.94 297.68 -8.06 -40.00 By element: Atomic # 1 Polarization: -0.87 SS G_CDS: -2.87 Total: -3.75 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -2.06 Total: -6.64 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.61 Total: -30.58 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.69 Total: -17.59 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -2.51 Total: -2.14 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.94 -8.06 -40.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910200388.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.324 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds