Wall clock time and date at job start Mon Mar 30 2020 01:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99651 * 2 1 4 4 H 1.48501 * 109.46763 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47037 * 299.99490 * 3 2 1 6 6 H 1.48491 * 109.47269 * 59.99949 * 3 2 1 7 7 C 1.37874 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99356 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47382 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.47568 * 180.02562 * 10 9 7 12 12 C 1.34734 * 116.99949 * 180.02562 * 11 10 9 13 13 O 1.21492 * 120.00611 * 359.97438 * 12 11 10 14 14 C 1.47534 * 119.99757 * 180.02562 * 12 11 10 15 15 C 1.40214 * 119.85835 * 0.02562 * 14 12 11 16 16 C 1.36164 * 119.99643 * 179.97438 * 15 14 12 17 17 C 1.39665 * 120.51327 * 0.02562 * 16 15 14 18 18 S 1.76243 * 131.16600 * 179.97438 * 17 16 15 19 19 C 1.75798 * 90.40278 * 180.02562 * 18 17 16 20 20 N 1.27988 * 110.49105 * 0.02562 * 19 18 17 21 21 C 1.34743 * 118.11156 * 359.97438 * 20 19 18 22 22 C 1.38705 * 119.85677 * 179.97438 * 14 12 11 23 23 H 0.96998 * 119.99875 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47089 * 60.00065 * 9 7 2 25 25 H 1.08997 * 109.47738 * 299.99987 * 9 7 2 26 26 H 1.09000 * 109.46860 * 60.00042 * 10 9 7 27 27 H 1.09000 * 109.47273 * 300.00624 * 10 9 7 28 28 H 1.07999 * 119.99995 * 0.02562 * 15 14 12 29 29 H 1.08001 * 119.74103 * 180.28350 * 16 15 14 30 30 H 1.08003 * 124.75626 * 180.02562 * 19 18 17 31 31 H 1.08002 * 119.91805 * 0.04262 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5194 -4.9195 -0.0001 12 6 2.2533 -6.0495 0.0004 13 8 3.4665 -5.9859 0.0008 14 6 1.5835 -7.3640 -0.0008 15 6 0.1831 -7.4340 -0.0029 16 6 -0.4379 -8.6457 -0.0045 17 6 0.3094 -9.8256 -0.0035 18 16 -0.1907 -11.5156 -0.0044 19 6 1.4915 -12.0262 -0.0012 20 7 2.2684 -11.0092 0.0009 21 6 1.7095 -9.7832 -0.0003 22 6 2.3419 -8.5254 -0.0008 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 2.8720 -3.6042 0.8905 27 1 2.8721 -3.6042 -0.8894 28 1 -0.4029 -6.5268 -0.0041 29 1 -1.5168 -8.6948 -0.0107 30 1 1.8229 -13.0542 -0.0009 31 1 3.4202 -8.4646 0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910200388.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:39 Heat of formation + Delta-G solvation = -55.547811 kcal Electronic energy + Delta-G solvation = -17561.597107 eV Core-core repulsion = 14512.656714 eV Total energy + Delta-G solvation = -3048.940394 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.88873 -40.96929 -38.09571 -37.55535 -35.45368 -32.72428 -32.22729 -31.19739 -27.37231 -26.21544 -25.21492 -23.30973 -22.91386 -21.68695 -19.81625 -18.90718 -18.20471 -17.91554 -17.59722 -17.22306 -16.80249 -16.50540 -15.87282 -15.16487 -15.10941 -15.09016 -14.72555 -14.37407 -14.11967 -13.27117 -13.20848 -13.01273 -12.97346 -12.62777 -12.60310 -12.23607 -11.93214 -11.58089 -11.52165 -11.38554 -11.31726 -10.76990 -10.61466 -9.94114 -9.27671 -8.27301 -6.39937 -0.81152 -0.55148 0.15284 0.56515 1.03966 1.40569 1.41779 1.46953 1.51095 1.58311 2.39587 2.49716 2.93393 3.07465 3.38805 3.51054 3.87975 3.96955 4.08636 4.21383 4.22866 4.44967 4.52621 4.67830 4.88967 4.91948 5.05378 5.21064 5.36510 5.46510 5.47174 5.73108 6.06500 6.43009 6.57736 6.73721 7.29753 8.85454 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.052633 B = 0.002915 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.856772 B = 9602.858385 C =10114.269495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.064 0.936 9 C 0.032 3.968 10 C 0.090 3.910 11 O -0.352 6.352 12 C 0.505 3.495 13 O -0.537 6.537 14 C -0.118 4.118 15 C -0.052 4.052 16 C -0.073 4.073 17 C -0.158 4.158 18 S 0.103 5.897 19 C 0.117 3.883 20 N -0.493 5.493 21 C 0.048 3.952 22 C -0.005 4.005 23 H 0.268 0.732 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.160 0.840 29 H 0.172 0.828 30 H 0.255 0.745 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 -25.788 -0.020 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.587 4.587 8 H 0.082 0.918 9 C -0.006 4.006 10 C 0.017 3.983 11 O -0.268 6.268 12 C 0.351 3.649 13 O -0.429 6.429 14 C -0.122 4.122 15 C -0.074 4.074 16 C -0.095 4.095 17 C -0.278 4.278 18 S 0.357 5.643 19 C -0.189 4.189 20 N -0.204 5.204 21 C -0.071 4.071 22 C -0.025 4.025 23 H 0.077 0.923 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.178 0.822 29 H 0.190 0.810 30 H 0.271 0.729 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.064 -26.312 -0.020 26.490 hybrid contribution 1.058 1.926 0.002 2.198 sum -2.005 -24.386 -0.018 24.468 Atomic orbital electron populations 1.70092 1.07718 1.28211 1.50445 1.25930 0.95843 1.03298 0.94109 0.85291 0.78883 0.78205 0.78023 1.18752 1.20045 1.20057 1.21395 0.93699 0.91251 1.52395 0.91791 1.18984 0.94298 0.90282 0.96986 1.23265 0.95241 0.78559 1.01249 1.86543 1.41782 1.15410 1.83048 1.21430 0.85420 0.85827 0.72251 1.90798 1.16109 1.88573 1.47406 1.18810 0.94946 0.88772 1.09662 1.21329 0.92134 0.99798 0.94110 1.20372 1.01546 0.88166 0.99442 1.24342 0.96845 1.00521 1.06079 1.85012 1.11395 0.93916 1.73951 1.29881 0.90046 1.02868 0.96095 1.66190 1.39012 0.97993 1.17239 1.19064 0.89654 0.91821 1.06581 1.20729 1.00714 0.88103 0.92992 0.92315 0.97186 0.97179 0.91996 0.92002 0.82226 0.81018 0.72894 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.55 -31.05 9.11 25.60 0.23 -30.81 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.68 5.35 29.85 0.16 1.84 16 10 C 0.09 4.05 5.41 71.98 0.39 4.44 16 11 O -0.35 -14.15 9.45 -56.44 -0.53 -14.68 16 12 C 0.50 18.62 7.89 70.27 0.55 19.17 16 13 O -0.54 -22.33 16.09 19.86 0.32 -22.01 16 14 C -0.12 -3.45 5.85 -20.23 -0.12 -3.57 16 15 C -0.05 -1.22 9.55 22.27 0.21 -1.01 16 16 C -0.07 -1.35 9.99 22.13 0.22 -1.13 16 17 C -0.16 -3.12 6.55 23.06 0.15 -2.97 16 18 S 0.10 1.25 23.39 -56.49 -1.32 -0.07 16 19 C 0.12 1.39 12.40 130.80 1.62 3.01 16 20 N -0.49 -10.41 10.56 -190.65 -2.01 -12.42 16 21 C 0.05 1.15 6.94 39.76 0.28 1.42 16 22 C 0.00 -0.13 9.65 23.00 0.22 0.09 16 23 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 24 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.16 3.59 7.59 -2.91 -0.02 3.57 16 29 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.26 0.41 8.06 -2.91 -0.02 0.39 16 31 H 0.14 4.06 7.60 -2.91 -0.02 4.04 16 Total: -1.00 -70.31 297.68 4.31 -66.00 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: 1.16 Total: 0.88 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 4.39 Total: -8.63 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -1.73 Total: -67.03 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.21 Total: -36.70 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.32 Total: -0.07 kcal Total: -70.31 4.31 -66.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910200388.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.451 kcal (2) G-P(sol) polarization free energy of solvation -70.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds