Wall clock time and date at job start Mon Mar 30 2020 01:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39656 * 120.15385 * 298.65904 * 3 2 1 5 5 C 1.37925 * 119.84897 * 179.97438 * 4 3 2 6 6 C 1.38377 * 120.15190 * 0.02562 * 5 4 3 7 7 C 1.38345 * 120.30774 * 359.97438 * 6 5 4 8 8 C 1.37972 * 120.14716 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.07405 * 179.97438 * 8 7 6 10 10 O 1.45195 * 109.47342 * 359.97438 * 9 8 7 11 11 C 1.34228 * 117.00134 * 179.97438 * 10 9 8 12 12 O 1.20826 * 120.00110 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00067 * 180.02562 * 11 10 9 14 14 S 1.81004 * 109.47047 * 180.02562 * 13 11 10 15 15 C 1.76203 * 100.00059 * 180.02562 * 14 13 11 16 16 H 1.08004 * 119.99999 * 0.02562 * 15 14 13 17 17 C 1.38799 * 120.00088 * 180.02562 * 15 14 13 18 18 N 1.31627 * 119.99965 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99828 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47214 * 90.00119 * 19 17 15 21 21 H 1.48501 * 109.47428 * 209.99743 * 19 17 15 22 22 H 1.48507 * 109.47391 * 329.99932 * 19 17 15 23 23 H 1.08007 * 120.07559 * 0.26139 * 4 3 2 24 24 H 1.07999 * 119.92167 * 179.97438 * 5 4 3 25 25 H 1.07995 * 119.85238 * 179.97438 * 6 5 4 26 26 H 1.07992 * 119.92787 * 180.02562 * 7 6 5 27 27 H 1.08994 * 109.47256 * 120.00323 * 9 8 7 28 28 H 1.09007 * 109.47134 * 239.99591 * 9 8 7 29 29 H 1.08994 * 109.47464 * 300.00274 * 13 11 10 30 30 H 1.08999 * 109.46945 * 60.00301 * 13 11 10 31 31 H 0.96995 * 120.00003 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2697 -0.5782 1.0596 5 6 4.6489 -0.5745 1.0529 6 6 5.3374 0.0014 -0.0002 7 6 4.6486 0.5766 -1.0532 8 6 3.2689 0.5790 -1.0598 9 6 2.5203 1.2065 -2.2074 10 8 3.4680 1.7359 -3.1717 11 6 2.9596 2.3317 -4.2618 12 8 1.7623 2.4087 -4.4052 13 6 3.8820 2.9046 -5.3067 14 16 2.9019 3.6347 -6.6418 15 6 4.1950 4.2096 -7.6916 16 1 5.2267 4.0562 -7.4113 17 6 3.8878 4.8597 -8.8788 18 7 2.6305 5.0463 -9.2208 19 14 5.2587 5.4698 -9.9913 20 1 5.6227 4.4035 -10.9587 21 1 4.7981 6.6725 -10.7306 22 1 6.4453 5.8184 -9.1692 23 1 2.7336 -1.0318 1.8802 24 1 5.1928 -1.0215 1.8720 25 1 6.4173 0.0019 -0.0003 26 1 5.1921 1.0240 -1.8722 27 1 1.8946 0.4544 -2.6876 28 1 1.8931 2.0156 -1.8329 29 1 4.5098 3.6728 -4.8554 30 1 4.5117 2.1113 -5.7097 31 1 2.4158 5.5002 -10.0506 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914684399.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:59 Heat of formation + Delta-G solvation = -33.479011 kcal Electronic energy + Delta-G solvation = -17280.404296 eV Core-core repulsion = 14232.420877 eV Total energy + Delta-G solvation = -3047.983419 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47405 -39.59690 -36.69129 -36.31650 -32.66971 -32.51330 -31.65205 -29.82943 -26.86346 -25.56306 -24.12952 -22.27732 -20.89382 -19.12505 -17.96195 -17.31999 -16.63113 -16.55551 -15.67344 -15.35860 -14.87119 -14.72876 -14.63946 -14.11281 -13.73912 -13.69670 -13.37450 -13.08079 -12.71268 -12.64660 -12.51421 -12.13744 -11.62421 -11.50753 -11.12891 -11.09274 -10.84566 -10.82338 -10.12906 -9.93643 -9.35081 -9.16830 -9.14021 -8.39623 -6.63996 -6.29900 -4.03209 0.36678 0.89885 2.37917 2.46535 2.56386 2.64880 3.18807 3.20361 3.26493 3.43122 3.48035 3.53060 4.11583 4.21072 4.48123 4.60649 4.88274 4.99158 5.04576 5.05930 5.08367 5.18966 5.33041 5.45415 5.59014 5.71816 5.82532 6.00608 6.01404 6.03373 6.40471 6.55909 7.18339 7.52572 8.05027 8.27453 9.15520 10.77607 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.034638 B = 0.003190 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.157292 B = 8775.451776 C = 9563.163407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.246 3.754 3 C -0.024 4.024 4 C -0.069 4.069 5 C -0.123 4.123 6 C -0.087 4.087 7 C -0.098 4.098 8 C -0.038 4.038 9 C 0.099 3.901 10 O -0.356 6.356 11 C 0.480 3.520 12 O -0.484 6.484 13 C -0.128 4.128 14 S -0.058 6.058 15 C -0.537 4.537 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.922 3.078 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.271 1.271 23 H 0.135 0.865 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.147 0.853 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.703 -10.770 19.677 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.069 4.069 3 C -0.028 4.028 4 C -0.089 4.089 5 C -0.141 4.141 6 C -0.106 4.106 7 C -0.116 4.116 8 C -0.041 4.041 9 C 0.025 3.975 10 O -0.274 6.274 11 C 0.321 3.679 12 O -0.368 6.368 13 C -0.275 4.275 14 S 0.168 5.832 15 C -0.685 4.685 16 H 0.095 0.905 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.748 3.252 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.196 1.196 23 H 0.153 0.847 24 H 0.152 0.848 25 H 0.151 0.849 26 H 0.165 0.835 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.285 -10.613 19.397 22.522 hybrid contribution 2.436 0.279 -0.526 2.508 sum 6.721 -10.333 18.872 22.541 Atomic orbital electron populations 1.81295 1.11904 1.07819 1.07039 1.25686 0.92683 0.94260 0.94287 1.15662 0.84283 1.05457 0.97372 1.21110 0.94456 0.96938 0.96402 1.21145 0.93544 1.00191 0.99202 1.21487 1.00772 0.95313 0.93037 1.21105 0.92696 0.98567 0.99254 1.19675 0.94550 0.96595 0.93282 1.21670 0.90242 0.98728 0.86882 1.86444 1.40509 1.69079 1.31392 1.23371 0.89052 0.74866 0.80599 1.90699 1.16692 1.53424 1.76024 1.23304 1.02092 1.04038 0.98103 1.85482 1.09825 1.72504 1.15389 1.22836 0.93631 1.44057 1.07963 0.90524 1.25009 0.96463 0.95088 0.96960 1.70006 1.16988 1.39677 1.23516 0.86113 0.80825 0.78363 0.79890 1.20176 1.20712 1.19551 0.84733 0.84815 0.84857 0.83519 0.89366 0.89372 0.87743 0.87743 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.58 18.54 41.83 0.78 -4.81 16 2 C 0.25 2.78 14.39 -22.48 -0.32 2.46 16 3 C -0.02 -0.22 5.73 -106.93 -0.61 -0.83 16 4 C -0.07 -0.44 9.76 -39.17 -0.38 -0.82 16 5 C -0.12 -0.65 10.03 -39.64 -0.40 -1.05 16 6 C -0.09 -0.53 10.04 -39.49 -0.40 -0.92 16 7 C -0.10 -0.82 9.37 -39.64 -0.37 -1.20 16 8 C -0.04 -0.38 5.91 -104.21 -0.62 -1.00 16 9 C 0.10 1.25 4.86 36.00 0.18 1.43 16 10 O -0.36 -5.14 8.69 -39.25 -0.34 -5.48 16 11 C 0.48 8.79 7.98 36.01 0.29 9.08 16 12 O -0.48 -10.45 15.61 -18.75 -0.29 -10.75 16 13 C -0.13 -2.47 6.27 36.01 0.23 -2.25 16 14 S -0.06 -1.53 20.58 -107.50 -2.21 -3.74 16 15 C -0.54 -14.79 9.50 30.94 0.29 -14.50 16 16 H 0.08 1.98 7.80 -52.48 -0.41 1.57 16 17 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 18 N -0.87 -25.56 13.22 55.49 0.73 -24.82 16 19 Si 0.92 20.85 29.55 -169.99 -5.02 15.82 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 23 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 24 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 25 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 26 H 0.15 1.24 6.98 -52.49 -0.37 0.87 16 27 H 0.09 1.15 8.13 -51.93 -0.42 0.73 16 28 H 0.09 1.15 8.13 -51.92 -0.42 0.73 16 29 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 30 H 0.10 1.85 8.14 -51.92 -0.42 1.42 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 306.66 15.07 4.62 4.62 Total: -1.00 -33.09 306.66 -6.82 -39.91 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -2.87 Total: -3.13 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -2.21 Total: -7.63 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 1.51 Total: -29.63 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.63 Total: -16.23 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.09 -6.82 -39.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684399.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.435 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds