Wall clock time and date at job start Mon Mar 30 2020 01:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39656 * 120.15385 * 298.65904 * 3 2 1 5 5 C 1.37925 * 119.84897 * 179.97438 * 4 3 2 6 6 C 1.38377 * 120.15190 * 0.02562 * 5 4 3 7 7 C 1.38345 * 120.30774 * 359.97438 * 6 5 4 8 8 C 1.37972 * 120.14716 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.07405 * 179.97438 * 8 7 6 10 10 O 1.45195 * 109.47342 * 359.97438 * 9 8 7 11 11 C 1.34228 * 117.00134 * 179.97438 * 10 9 8 12 12 O 1.20826 * 120.00110 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00067 * 180.02562 * 11 10 9 14 14 S 1.81004 * 109.47047 * 180.02562 * 13 11 10 15 15 C 1.76203 * 100.00059 * 180.02562 * 14 13 11 16 16 H 1.08004 * 119.99999 * 0.02562 * 15 14 13 17 17 C 1.38799 * 120.00088 * 180.02562 * 15 14 13 18 18 N 1.31627 * 119.99965 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99828 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47214 * 90.00119 * 19 17 15 21 21 H 1.48501 * 109.47428 * 209.99743 * 19 17 15 22 22 H 1.48507 * 109.47391 * 329.99932 * 19 17 15 23 23 H 1.08007 * 120.07559 * 0.26139 * 4 3 2 24 24 H 1.07999 * 119.92167 * 179.97438 * 5 4 3 25 25 H 1.07995 * 119.85238 * 179.97438 * 6 5 4 26 26 H 1.07992 * 119.92787 * 180.02562 * 7 6 5 27 27 H 1.08994 * 109.47256 * 120.00323 * 9 8 7 28 28 H 1.09007 * 109.47134 * 239.99591 * 9 8 7 29 29 H 1.08994 * 109.47464 * 300.00274 * 13 11 10 30 30 H 1.08999 * 109.46945 * 60.00301 * 13 11 10 31 31 H 0.96995 * 120.00003 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2697 -0.5782 1.0596 5 6 4.6489 -0.5745 1.0529 6 6 5.3374 0.0014 -0.0002 7 6 4.6486 0.5766 -1.0532 8 6 3.2689 0.5790 -1.0598 9 6 2.5203 1.2065 -2.2074 10 8 3.4680 1.7359 -3.1717 11 6 2.9596 2.3317 -4.2618 12 8 1.7623 2.4087 -4.4052 13 6 3.8820 2.9046 -5.3067 14 16 2.9019 3.6347 -6.6418 15 6 4.1950 4.2096 -7.6916 16 1 5.2267 4.0562 -7.4113 17 6 3.8878 4.8597 -8.8788 18 7 2.6305 5.0463 -9.2208 19 14 5.2587 5.4698 -9.9913 20 1 5.6227 4.4035 -10.9587 21 1 4.7981 6.6725 -10.7306 22 1 6.4453 5.8184 -9.1692 23 1 2.7336 -1.0318 1.8802 24 1 5.1928 -1.0215 1.8720 25 1 6.4173 0.0019 -0.0003 26 1 5.1921 1.0240 -1.8722 27 1 1.8946 0.4544 -2.6876 28 1 1.8931 2.0156 -1.8329 29 1 4.5098 3.6728 -4.8554 30 1 4.5117 2.1113 -5.7097 31 1 2.4158 5.5002 -10.0506 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914684399.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:58 Heat of formation + Delta-G solvation = -52.526493 kcal Electronic energy + Delta-G solvation = -17281.230256 eV Core-core repulsion = 14232.420877 eV Total energy + Delta-G solvation = -3048.809379 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.70148 -40.45214 -37.74028 -37.53924 -34.60527 -33.46808 -32.28175 -31.30912 -27.91927 -27.54867 -24.76461 -23.20489 -22.08670 -20.07131 -19.63789 -18.73816 -17.87807 -17.65835 -16.88936 -16.47408 -16.39637 -15.85119 -15.71474 -15.38425 -14.88745 -14.70020 -14.47401 -14.16740 -13.97781 -13.81503 -13.61236 -13.20152 -13.17034 -12.88833 -12.65656 -12.28533 -12.09799 -12.08063 -11.78111 -11.68946 -11.15193 -10.36807 -9.93993 -9.80653 -8.74043 -8.36808 -6.17012 -0.27710 0.33834 0.94963 1.06710 1.41310 1.44611 1.49960 1.56091 1.79853 1.89755 2.24563 2.76026 2.82728 2.98692 3.21978 3.40778 3.72247 3.96324 4.01047 4.05113 4.20203 4.25064 4.45104 4.47335 4.52764 4.72497 5.01725 5.09477 5.32671 5.42132 5.43316 5.55295 5.89475 6.18945 6.32805 6.60215 7.05057 8.72482 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.034638 B = 0.003190 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.157292 B = 8775.451776 C = 9563.163407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.268 3.732 3 C -0.040 4.040 4 C -0.059 4.059 5 C -0.110 4.110 6 C -0.075 4.075 7 C -0.109 4.109 8 C -0.053 4.053 9 C 0.098 3.902 10 O -0.336 6.336 11 C 0.489 3.511 12 O -0.523 6.523 13 C -0.105 4.105 14 S -0.146 6.146 15 C -0.545 4.545 16 H 0.090 0.910 17 C 0.014 3.986 18 N -0.912 5.912 19 Si 1.001 2.999 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.255 1.255 23 H 0.157 0.843 24 H 0.171 0.829 25 H 0.164 0.836 26 H 0.144 0.856 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.326 -11.713 21.409 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.046 4.046 3 C -0.044 4.044 4 C -0.080 4.080 5 C -0.127 4.127 6 C -0.094 4.094 7 C -0.127 4.127 8 C -0.056 4.056 9 C 0.024 3.976 10 O -0.252 6.252 11 C 0.331 3.669 12 O -0.411 6.411 13 C -0.253 4.253 14 S 0.081 5.919 15 C -0.693 4.693 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.822 3.178 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.179 1.179 23 H 0.175 0.825 24 H 0.189 0.811 25 H 0.181 0.819 26 H 0.162 0.838 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.928 -11.573 21.160 25.388 hybrid contribution 1.397 0.468 -0.876 1.714 sum 9.325 -11.105 20.285 24.934 Atomic orbital electron populations 1.81302 1.13520 1.09987 1.08898 1.26120 0.93132 0.92673 0.92720 1.15773 0.82911 1.07203 0.98508 1.21448 0.95262 0.95540 0.95702 1.21592 0.92930 0.98602 0.99604 1.21853 1.02277 0.93405 0.91856 1.21187 0.91827 0.99366 1.00355 1.19458 0.95231 0.98244 0.92686 1.21784 0.90375 0.98231 0.87213 1.86413 1.40311 1.68128 1.30394 1.23130 0.88125 0.74428 0.81171 1.90696 1.18282 1.55102 1.77027 1.23086 1.01122 1.04986 0.96093 1.85652 1.13374 1.73809 1.19035 1.23202 0.94005 1.43876 1.08218 0.89222 1.26145 0.99141 0.95095 0.98681 1.70172 1.19570 1.40844 1.24241 0.84915 0.77534 0.77721 0.77587 1.19298 1.20513 1.17896 0.82506 0.81130 0.81888 0.83830 0.90442 0.90454 0.85420 0.85396 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.24 18.54 19.00 0.35 -12.88 16 2 C 0.27 6.13 14.39 88.33 1.27 7.40 16 3 C -0.04 -0.68 5.73 -21.36 -0.12 -0.80 16 4 C -0.06 -0.57 9.76 22.54 0.22 -0.35 16 5 C -0.11 -0.63 10.03 22.23 0.22 -0.40 16 6 C -0.08 -0.59 10.04 22.33 0.22 -0.36 16 7 C -0.11 -1.57 9.37 22.23 0.21 -1.37 16 8 C -0.05 -1.01 5.91 -19.60 -0.12 -1.13 16 9 C 0.10 2.53 4.86 71.24 0.35 2.88 16 10 O -0.34 -9.54 8.69 -51.40 -0.45 -9.98 16 11 C 0.49 17.99 7.98 71.24 0.57 18.56 16 12 O -0.52 -23.45 15.61 21.96 0.34 -23.11 16 13 C -0.10 -3.98 6.27 71.24 0.45 -3.54 16 14 S -0.15 -7.81 20.58 -56.49 -1.16 -8.97 16 15 C -0.55 -30.03 9.50 67.95 0.65 -29.38 16 16 H 0.09 4.52 7.80 -2.91 -0.02 4.50 16 17 C 0.01 0.79 5.49 84.86 0.47 1.26 16 18 N -0.91 -54.91 13.22 21.65 0.29 -54.62 16 19 Si 1.00 42.34 29.55 68.60 2.03 44.36 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 23 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 24 H 0.17 -0.17 8.06 -2.91 -0.02 -0.20 16 25 H 0.16 0.35 8.06 -2.91 -0.02 0.32 16 26 H 0.14 2.12 6.98 -2.91 -0.02 2.09 16 27 H 0.08 2.14 8.13 -2.39 -0.02 2.12 16 28 H 0.08 2.14 8.13 -2.38 -0.02 2.12 16 29 H 0.13 4.30 8.14 -2.40 -0.02 4.28 16 30 H 0.13 4.30 8.14 -2.40 -0.02 4.28 16 31 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -75.09 306.66 6.94 -68.15 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.16 Total: 4.30 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 4.38 Total: -7.23 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: 0.64 Total: -67.51 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.10 Total: -33.10 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: -7.81 SS G_CDS: -1.16 Total: -8.97 kcal Total: -75.09 6.94 -68.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684399.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.621 kcal (2) G-P(sol) polarization free energy of solvation -75.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds