Wall clock time and date at job start Mon Mar 30 2020 01:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00237 * 2 1 4 4 H 1.48494 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47176 * 300.00072 * 3 2 1 6 6 H 1.48505 * 109.46916 * 59.99947 * 3 2 1 7 7 C 1.37876 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00276 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47277 * 179.97438 * 9 7 2 11 11 O 1.45208 * 109.47189 * 179.97438 * 10 9 7 12 12 C 1.34794 * 116.99985 * 180.02562 * 11 10 9 13 13 O 1.21542 * 119.99992 * 359.97438 * 12 11 10 14 14 C 1.47230 * 120.00067 * 180.02562 * 12 11 10 15 15 N 1.29745 * 121.83894 * 359.96936 * 14 12 11 16 16 S 1.56008 * 111.73813 * 179.45673 * 15 14 12 17 17 C 1.76254 * 97.56561 * 0.55625 * 16 15 14 18 18 C 1.38703 * 134.17098 * 179.33566 * 17 16 15 19 19 C 1.36810 * 119.62570 * 180.02562 * 18 17 16 20 20 C 1.38893 * 120.30500 * 359.97438 * 19 18 17 21 21 C 1.36341 * 121.03569 * 0.02562 * 20 19 18 22 22 C 1.40402 * 119.96206 * 0.28494 * 21 20 19 23 23 H 0.97002 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47445 * 60.00147 * 9 7 2 25 25 H 1.09001 * 109.47583 * 300.00213 * 9 7 2 26 26 H 1.09004 * 109.47238 * 60.00232 * 10 9 7 27 27 H 1.08997 * 109.47319 * 300.00203 * 10 9 7 28 28 H 1.07994 * 120.18520 * 0.05291 * 18 17 16 29 29 H 1.08000 * 119.84350 * 179.97438 * 19 18 17 30 30 H 1.08002 * 119.48209 * 180.02562 * 20 19 18 31 31 H 1.08002 * 120.01652 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9196 0.0011 12 6 2.2533 -6.0501 0.0018 13 8 3.4670 -5.9865 0.0013 14 6 1.5849 -7.3619 0.0018 15 7 0.2921 -7.4714 0.0019 16 16 -0.1614 -8.9640 -0.0118 17 6 1.4428 -9.6940 -0.0031 18 6 1.9104 -10.9998 0.0038 19 6 3.2580 -11.2356 0.0102 20 6 4.1550 -10.1752 0.0092 21 6 3.7171 -8.8840 0.0025 22 6 2.3400 -8.6107 0.0025 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5572 -0.8897 25 1 0.6239 -2.5568 0.8902 26 1 2.8719 -3.6044 0.8906 27 1 2.8719 -3.6043 -0.8894 28 1 1.2146 -11.8258 0.0037 29 1 3.6260 -12.2510 0.0159 30 1 5.2161 -10.3765 0.0139 31 1 4.4292 -8.0720 0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923025198.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:36 Heat of formation + Delta-G solvation = -36.431623 kcal Electronic energy + Delta-G solvation = -17773.938307 eV Core-core repulsion = 14725.826854 eV Total energy + Delta-G solvation = -3048.111453 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.73911 -39.42745 -37.17188 -36.13068 -33.33283 -31.40944 -30.91653 -30.29581 -26.84883 -24.80339 -23.39410 -22.76758 -20.99250 -20.40946 -18.98000 -17.71388 -16.62069 -16.43676 -16.20199 -15.81488 -15.48720 -14.85294 -14.84169 -14.49233 -14.07265 -13.23529 -12.97050 -12.56564 -12.42544 -12.35104 -12.02209 -11.33153 -11.26243 -11.03876 -10.95013 -10.78187 -10.70321 -10.31568 -10.10524 -9.66885 -9.64307 -9.37269 -9.27850 -8.43783 -8.17135 -6.09120 -4.13775 0.10163 0.77788 1.06252 1.34842 1.51219 2.89146 2.96777 3.28416 3.35717 3.38804 3.40607 4.05045 4.37365 4.45958 4.62646 4.91108 5.04528 5.16142 5.17302 5.27364 5.60285 5.69975 5.84487 6.01008 6.07186 6.08575 6.17620 6.48246 6.61900 6.82684 7.56241 7.63799 7.85767 8.08127 8.24271 8.91999 9.50514 11.02428 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.038148 B = 0.003413 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.811499 B = 8201.751392 C = 8915.105477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.074 3.926 11 O -0.333 6.333 12 C 0.534 3.466 13 O -0.501 6.501 14 C 0.102 3.898 15 N -0.451 5.451 16 S 0.398 5.602 17 C -0.205 4.205 18 C -0.072 4.072 19 C -0.091 4.091 20 C -0.117 4.117 21 C -0.044 4.044 22 C -0.085 4.085 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 -25.032 -0.013 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.013 4.013 10 C 0.001 3.999 11 O -0.248 6.248 12 C 0.373 3.627 13 O -0.389 6.389 14 C -0.084 4.084 15 N -0.279 5.279 16 S 0.557 5.443 17 C -0.325 4.325 18 C -0.094 4.094 19 C -0.114 4.114 20 C -0.137 4.137 21 C -0.066 4.066 22 C -0.096 4.096 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.725 -24.531 -0.020 24.592 hybrid contribution 2.279 1.127 0.015 2.542 sum 4.003 -23.405 -0.005 23.744 Atomic orbital electron populations 1.69990 1.06107 1.26884 1.49765 1.24993 0.94918 0.99415 0.94883 0.86406 0.80037 0.83125 0.77690 1.19565 1.20834 1.20837 1.21006 0.93206 0.90011 1.52168 0.92134 1.19185 0.94191 0.88845 0.99071 1.23789 0.96559 0.78322 1.01207 1.86719 1.41318 1.15106 1.81639 1.19868 0.84993 0.84138 0.73718 1.90800 1.14167 1.87689 1.46217 1.21014 0.87187 0.92854 1.07320 1.71610 1.17622 1.21922 1.16706 1.81493 1.06438 0.90370 1.66013 1.24338 1.01153 0.98465 1.08589 1.19941 0.96044 0.93036 1.00353 1.21083 0.92669 0.99686 0.97975 1.20925 1.00549 0.92019 1.00205 1.20857 0.92719 0.97955 0.95105 1.19524 0.95533 0.89347 1.05150 0.92749 0.95244 0.95231 0.91949 0.91938 0.84707 0.84737 0.84770 0.83392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.07 1.69 5.42 37.16 0.20 1.89 16 11 O -0.33 -7.29 10.10 -40.75 -0.41 -7.70 16 12 C 0.53 10.34 7.95 34.38 0.27 10.62 16 13 O -0.50 -9.86 14.80 -19.30 -0.29 -10.14 16 14 C 0.10 1.70 6.82 -82.02 -0.56 1.14 16 15 N -0.45 -7.32 11.01 28.27 0.31 -7.01 16 16 S 0.40 4.56 23.36 -107.50 -2.51 2.05 16 17 C -0.20 -2.30 6.73 -38.50 -0.26 -2.56 16 18 C -0.07 -0.58 10.03 -39.93 -0.40 -0.98 16 19 C -0.09 -0.65 10.00 -39.86 -0.40 -1.05 16 20 C -0.12 -0.99 9.93 -40.02 -0.40 -1.39 16 21 C -0.04 -0.52 9.57 -39.45 -0.38 -0.90 16 22 C -0.09 -1.17 6.10 -105.09 -0.64 -1.81 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 27 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 29 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 30 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.15 1.84 6.64 -52.49 -0.35 1.49 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -32.57 295.30 -8.70 -41.27 By element: Atomic # 1 Polarization: -2.38 SS G_CDS: -2.85 Total: -5.23 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -3.12 Total: -8.22 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 1.05 Total: -33.06 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.70 Total: -17.84 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -2.51 Total: 2.05 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.57 -8.70 -41.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923025198.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.838 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds