Wall clock time and date at job start Mon Mar 30 2020 01:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00237 * 2 1 4 4 H 1.48494 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47176 * 300.00072 * 3 2 1 6 6 H 1.48505 * 109.46916 * 59.99947 * 3 2 1 7 7 C 1.37876 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00276 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47277 * 179.97438 * 9 7 2 11 11 O 1.45208 * 109.47189 * 179.97438 * 10 9 7 12 12 C 1.34794 * 116.99985 * 180.02562 * 11 10 9 13 13 O 1.21542 * 119.99992 * 359.97438 * 12 11 10 14 14 C 1.47230 * 120.00067 * 180.02562 * 12 11 10 15 15 N 1.29745 * 121.83894 * 359.96936 * 14 12 11 16 16 S 1.56008 * 111.73813 * 179.45673 * 15 14 12 17 17 C 1.76254 * 97.56561 * 0.55625 * 16 15 14 18 18 C 1.38703 * 134.17098 * 179.33566 * 17 16 15 19 19 C 1.36810 * 119.62570 * 180.02562 * 18 17 16 20 20 C 1.38893 * 120.30500 * 359.97438 * 19 18 17 21 21 C 1.36341 * 121.03569 * 0.02562 * 20 19 18 22 22 C 1.40402 * 119.96206 * 0.28494 * 21 20 19 23 23 H 0.97002 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47445 * 60.00147 * 9 7 2 25 25 H 1.09001 * 109.47583 * 300.00213 * 9 7 2 26 26 H 1.09004 * 109.47238 * 60.00232 * 10 9 7 27 27 H 1.08997 * 109.47319 * 300.00203 * 10 9 7 28 28 H 1.07994 * 120.18520 * 0.05291 * 18 17 16 29 29 H 1.08000 * 119.84350 * 179.97438 * 19 18 17 30 30 H 1.08002 * 119.48209 * 180.02562 * 20 19 18 31 31 H 1.08002 * 120.01652 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9196 0.0011 12 6 2.2533 -6.0501 0.0018 13 8 3.4670 -5.9865 0.0013 14 6 1.5849 -7.3619 0.0018 15 7 0.2921 -7.4714 0.0019 16 16 -0.1614 -8.9640 -0.0118 17 6 1.4428 -9.6940 -0.0031 18 6 1.9104 -10.9998 0.0038 19 6 3.2580 -11.2356 0.0102 20 6 4.1550 -10.1752 0.0092 21 6 3.7171 -8.8840 0.0025 22 6 2.3400 -8.6107 0.0025 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5572 -0.8897 25 1 0.6239 -2.5568 0.8902 26 1 2.8719 -3.6044 0.8906 27 1 2.8719 -3.6043 -0.8894 28 1 1.2146 -11.8258 0.0037 29 1 3.6260 -12.2510 0.0159 30 1 5.2161 -10.3765 0.0139 31 1 4.4292 -8.0720 0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923025198.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:36 Heat of formation + Delta-G solvation = -56.014373 kcal Electronic energy + Delta-G solvation = -17774.787479 eV Core-core repulsion = 14725.826854 eV Total energy + Delta-G solvation = -3048.960625 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.94841 -40.66240 -38.14587 -37.76485 -35.48830 -32.43834 -32.14074 -31.69940 -28.30250 -26.66542 -24.25227 -23.75970 -22.90425 -21.78014 -20.02094 -19.04038 -18.34368 -17.79389 -17.77934 -17.20123 -16.55534 -16.18588 -16.10012 -15.65104 -14.93149 -14.87342 -14.65021 -14.39550 -13.45026 -13.22139 -13.20472 -13.07818 -12.82312 -12.66476 -12.58640 -12.44558 -11.89919 -11.79219 -11.57357 -11.55607 -11.37279 -10.94757 -10.65417 -10.15934 -9.03604 -8.29613 -6.43955 -0.94072 -0.04562 0.17753 0.41491 0.47759 1.38931 1.41013 1.52193 1.57938 1.58800 2.37884 2.60487 3.04622 3.08556 3.48898 3.76426 4.04233 4.14737 4.15278 4.29433 4.37213 4.46915 4.60935 4.74711 4.93601 5.04943 5.15704 5.33054 5.37708 5.39326 5.45226 5.68452 5.82242 6.01283 6.48318 6.69890 7.26141 8.83666 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.038148 B = 0.003413 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.811499 B = 8201.751392 C = 8915.105477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.979 3.021 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.069 0.931 9 C 0.031 3.969 10 C 0.089 3.911 11 O -0.352 6.352 12 C 0.530 3.470 13 O -0.512 6.512 14 C 0.070 3.930 15 N -0.500 5.500 16 S 0.464 5.536 17 C -0.214 4.214 18 C -0.066 4.066 19 C -0.076 4.076 20 C -0.102 4.102 21 C -0.075 4.075 22 C -0.109 4.109 23 H 0.268 0.732 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.174 0.826 29 H 0.181 0.819 30 H 0.164 0.836 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.108 -27.835 -0.011 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.087 0.913 9 C -0.006 4.006 10 C 0.016 3.984 11 O -0.267 6.267 12 C 0.370 3.630 13 O -0.400 6.400 14 C -0.113 4.113 15 N -0.330 5.330 16 S 0.624 5.376 17 C -0.335 4.335 18 C -0.087 4.087 19 C -0.099 4.099 20 C -0.121 4.121 21 C -0.098 4.098 22 C -0.119 4.119 23 H 0.077 0.923 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.191 0.809 29 H 0.198 0.802 30 H 0.182 0.818 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.012 -27.364 -0.019 27.530 hybrid contribution 1.834 1.723 0.014 2.517 sum 4.846 -25.642 -0.004 26.095 Atomic orbital electron populations 1.70124 1.08006 1.28307 1.50366 1.26045 0.95872 1.03679 0.93955 0.85193 0.78925 0.77646 0.78024 1.18321 1.20004 1.20014 1.21390 0.93818 0.90885 1.52560 0.91264 1.18989 0.94358 0.90786 0.96492 1.23340 0.95201 0.78256 1.01632 1.86693 1.41950 1.15542 1.82547 1.20432 0.85128 0.84412 0.73000 1.90764 1.14531 1.87924 1.46826 1.20872 0.87710 0.92126 1.10624 1.71257 1.18020 1.26204 1.17500 1.81005 1.05804 0.87457 1.63314 1.24586 1.00225 0.99259 1.09424 1.20520 0.97435 0.92376 0.98392 1.21639 0.91874 1.01279 0.95153 1.21348 1.02581 0.90799 0.97390 1.20893 0.91744 0.99299 0.97836 1.19574 0.96714 0.88687 1.06881 0.92295 0.97843 0.97832 0.91442 0.91427 0.80898 0.80188 0.81805 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.98 44.57 29.54 68.60 2.03 46.60 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 8 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.03 1.77 5.35 29.85 0.16 1.93 16 10 C 0.09 4.28 5.42 71.98 0.39 4.67 16 11 O -0.35 -16.46 10.10 -57.06 -0.58 -17.03 16 12 C 0.53 21.89 7.95 70.19 0.56 22.45 16 13 O -0.51 -21.33 14.80 19.70 0.29 -21.04 16 14 C 0.07 2.46 6.82 43.81 0.30 2.76 16 15 N -0.50 -16.82 11.01 -64.47 -0.71 -17.53 16 16 S 0.46 10.19 23.36 -56.49 -1.32 8.87 16 17 C -0.21 -4.38 6.73 22.97 0.15 -4.22 16 18 C -0.07 -0.77 10.03 22.05 0.22 -0.55 16 19 C -0.08 -0.70 10.00 22.09 0.22 -0.47 16 20 C -0.10 -1.40 9.93 21.98 0.22 -1.18 16 21 C -0.08 -1.75 9.57 22.35 0.21 -1.53 16 22 C -0.11 -3.01 6.10 -20.17 -0.12 -3.13 16 23 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 24 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 25 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 26 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 27 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 29 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 30 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 31 H 0.13 3.38 6.64 -2.91 -0.02 3.37 16 Total: -1.00 -74.94 295.30 4.16 -70.78 By element: Atomic # 1 Polarization: -4.10 SS G_CDS: 1.16 Total: -2.94 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 3.01 Total: -10.55 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -0.42 Total: -74.68 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -0.28 Total: -38.08 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 10.19 SS G_CDS: -1.32 Total: 8.87 kcal Total: -74.94 4.16 -70.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923025198.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.763 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds