Wall clock time and date at job start Mon Mar 30 2020 01:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47388 * 2 1 4 4 C 1.50697 * 109.46971 * 239.99978 * 2 1 3 5 5 H 1.08001 * 119.99712 * 240.00193 * 4 2 1 6 6 C 1.37867 * 120.00300 * 59.99931 * 4 2 1 7 7 N 1.31521 * 120.00007 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00273 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46736 * 60.00201 * 8 6 4 10 10 H 1.48501 * 109.47386 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47100 * 300.00699 * 8 6 4 12 12 O 1.45206 * 109.46799 * 119.99850 * 2 1 3 13 13 C 1.34738 * 117.00120 * 269.99592 * 12 2 1 14 14 O 1.21496 * 120.00061 * 0.02562 * 13 12 2 15 15 C 1.47531 * 120.00127 * 180.02562 * 13 12 2 16 16 C 1.40215 * 119.85497 * 359.97438 * 15 13 12 17 17 C 1.36156 * 119.99181 * 179.97438 * 16 15 13 18 18 C 1.39659 * 120.51760 * 359.97438 * 17 16 15 19 19 S 1.76244 * 131.16794 * 180.02562 * 18 17 16 20 20 C 1.75806 * 90.40473 * 180.02562 * 19 18 17 21 21 N 1.27979 * 110.48780 * 359.73987 * 20 19 18 22 22 C 1.34751 * 118.11516 * 0.48488 * 21 20 19 23 23 C 1.38708 * 119.85451 * 179.97438 * 15 13 12 24 24 H 1.09005 * 109.47292 * 300.00102 * 1 2 3 25 25 H 1.08998 * 109.47440 * 59.99507 * 1 2 3 26 26 H 1.08999 * 109.47388 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99915 * 179.97438 * 7 6 4 28 28 H 1.08002 * 119.99911 * 359.96137 * 16 15 13 29 29 H 1.08002 * 119.73996 * 180.02562 * 17 16 15 30 30 H 1.07999 * 124.75250 * 179.97438 * 20 19 18 31 31 H 1.08000 * 119.92156 * 0.02562 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6531 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8279 -2.5199 -4.0080 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1192 -4.0076 12 8 2.0139 -0.6845 1.1856 13 6 2.2179 0.0669 2.2853 14 8 1.9970 1.2612 2.2546 15 6 2.7094 -0.5607 3.5267 16 6 2.9629 -1.9394 3.5590 17 6 3.4171 -2.5213 4.7030 18 6 3.6347 -1.7552 5.8503 19 16 4.2080 -2.2060 7.4548 20 6 4.0752 -0.5352 7.9853 21 7 3.6559 0.2061 7.0300 22 6 3.3887 -0.3763 5.8446 23 6 2.9188 0.2158 4.6569 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7095 1.1617 -3.4844 28 1 2.7976 -2.5396 2.6764 29 1 3.6114 -3.5835 4.7232 30 1 4.3174 -0.1830 8.9771 31 1 2.7213 1.2771 4.6255 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122704595.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:59 Heat of formation + Delta-G solvation = -31.341064 kcal Electronic energy + Delta-G solvation = -18104.686974 eV Core-core repulsion = 15056.796264 eV Total energy + Delta-G solvation = -3047.890710 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.60035 -39.36777 -36.87962 -35.71910 -33.29826 -31.39043 -30.40147 -29.41100 -25.40383 -25.27785 -24.32231 -22.23002 -21.31014 -19.71728 -18.72124 -17.25684 -16.79843 -16.33554 -15.93658 -15.52426 -15.21115 -14.71128 -14.59916 -14.09911 -14.07469 -13.50240 -12.88879 -12.39703 -12.18391 -12.01822 -11.81747 -11.29730 -11.20126 -11.07084 -10.87957 -10.43345 -10.31352 -10.30826 -9.95239 -9.85567 -9.60117 -8.96472 -8.92464 -8.52124 -8.36037 -6.21084 -4.28568 0.17645 0.61851 0.98390 1.39773 2.07701 2.91255 3.24005 3.25203 3.29295 3.36585 3.77043 3.89294 4.30835 4.38036 4.90766 4.94094 4.96267 5.11872 5.16516 5.47589 5.73680 5.84054 6.04382 6.21750 6.40773 6.60246 6.85867 6.86914 7.08084 7.28870 7.54692 7.68225 7.87241 8.09038 8.53013 8.81659 9.36876 10.86357 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.040216 B = 0.003635 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.081378 B = 7701.955516 C = 8138.949101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.049 0.951 4 C -0.523 4.523 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.348 6.348 13 C 0.497 3.503 14 O -0.511 6.511 15 C -0.098 4.098 16 C -0.042 4.042 17 C -0.090 4.090 18 C -0.142 4.142 19 S 0.039 5.961 20 C 0.097 3.903 21 N -0.452 5.452 22 C 0.058 3.942 23 C 0.002 3.998 24 H 0.017 0.983 25 H 0.100 0.900 26 H 0.038 0.962 27 H 0.267 0.733 28 H 0.157 0.843 29 H 0.138 0.862 30 H 0.210 0.790 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.476 -6.934 18.519 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.561 4.561 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.264 6.264 13 C 0.341 3.659 14 O -0.402 6.402 15 C -0.103 4.103 16 C -0.063 4.063 17 C -0.113 4.113 18 C -0.261 4.261 19 S 0.291 5.709 20 C -0.209 4.209 21 N -0.162 5.162 22 C -0.061 4.061 23 C -0.019 4.019 24 H 0.036 0.964 25 H 0.119 0.881 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.174 0.826 29 H 0.156 0.844 30 H 0.226 0.774 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.562 -6.769 18.940 20.868 hybrid contribution -0.058 0.143 -1.445 1.454 sum 5.504 -6.627 17.495 19.501 Atomic orbital electron populations 1.22176 0.97399 1.00235 1.01535 1.20709 0.91483 0.94033 0.77378 0.93359 1.20968 1.32722 1.13602 0.88792 0.91257 1.24885 0.94880 0.95084 0.99071 1.69890 1.35917 1.22456 1.24370 0.86315 0.79230 0.79517 0.80960 1.19904 1.21021 1.19957 1.86534 1.75736 1.43128 1.21020 1.20744 0.75295 0.85261 0.84605 1.90797 1.48569 1.16124 1.84710 1.19201 1.04220 0.94248 0.92583 1.21301 0.93090 0.93711 0.98224 1.20053 1.01158 0.99874 0.90175 1.23909 1.05841 0.97457 0.98850 1.85053 1.67804 1.14071 1.03951 1.28956 0.99573 0.90552 1.01851 1.66130 1.13245 1.37354 0.99468 1.18999 1.05222 0.89070 0.92760 1.20837 0.92188 1.00996 0.87836 0.96421 0.88135 0.94317 0.92273 0.82577 0.84381 0.77379 0.83077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.33 37.16 0.35 -3.56 16 2 C 0.22 5.73 2.56 -27.89 -0.07 5.66 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.42 8.90 -34.45 -0.31 -14.73 16 5 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 O -0.35 -8.08 9.09 -40.59 -0.37 -8.45 16 13 C 0.50 10.51 7.86 34.52 0.27 10.78 16 14 O -0.51 -12.13 15.56 -19.26 -0.30 -12.43 16 15 C -0.10 -1.63 5.85 -105.19 -0.62 -2.25 16 16 C -0.04 -0.57 9.55 -39.59 -0.38 -0.95 16 17 C -0.09 -1.04 9.99 -39.80 -0.40 -1.44 16 18 C -0.14 -1.74 6.55 -38.36 -0.25 -1.99 16 19 S 0.04 0.35 23.39 -107.50 -2.51 -2.16 16 20 C 0.10 0.87 12.40 51.16 0.63 1.50 16 21 N -0.45 -5.78 10.56 -11.64 -0.12 -5.90 16 22 C 0.06 0.81 6.94 -84.93 -0.59 0.22 16 23 C 0.00 0.03 9.65 -38.45 -0.37 -0.34 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.10 2.69 6.07 -51.93 -0.32 2.38 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 28 H 0.16 2.03 7.59 -52.49 -0.40 1.63 16 29 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.21 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.15 2.38 7.60 -52.49 -0.40 1.98 16 LS Contribution 292.59 15.07 4.41 4.41 Total: -1.00 -31.29 292.59 -7.83 -39.12 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -2.72 Total: -0.48 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.82 Total: -5.48 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.50 Total: -30.30 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.67 Total: -20.88 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -2.51 Total: -2.16 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.29 -7.83 -39.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122704595.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.780 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds